GO Enrichment Analysis of Co-expressed Genes with
AT3G23700
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 2 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 3 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 6 | GO:0045176: apical protein localization | 0.00E+00 |
| 7 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 8 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 9 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 10 | GO:0009773: photosynthetic electron transport in photosystem I | 1.45E-07 |
| 11 | GO:0042549: photosystem II stabilization | 5.16E-07 |
| 12 | GO:0032544: plastid translation | 3.33E-06 |
| 13 | GO:0015979: photosynthesis | 3.79E-06 |
| 14 | GO:0042254: ribosome biogenesis | 1.60E-04 |
| 15 | GO:0071482: cellular response to light stimulus | 1.78E-04 |
| 16 | GO:1902025: nitrate import | 1.82E-04 |
| 17 | GO:0043489: RNA stabilization | 1.82E-04 |
| 18 | GO:0033481: galacturonate biosynthetic process | 1.82E-04 |
| 19 | GO:0006106: fumarate metabolic process | 1.82E-04 |
| 20 | GO:0090548: response to nitrate starvation | 1.82E-04 |
| 21 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.82E-04 |
| 22 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 1.82E-04 |
| 23 | GO:0010205: photoinhibition | 2.59E-04 |
| 24 | GO:0034755: iron ion transmembrane transport | 4.10E-04 |
| 25 | GO:0010115: regulation of abscisic acid biosynthetic process | 4.10E-04 |
| 26 | GO:0001736: establishment of planar polarity | 4.10E-04 |
| 27 | GO:0009631: cold acclimation | 4.25E-04 |
| 28 | GO:0006006: glucose metabolic process | 4.63E-04 |
| 29 | GO:0010143: cutin biosynthetic process | 5.21E-04 |
| 30 | GO:0010207: photosystem II assembly | 5.21E-04 |
| 31 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.48E-04 |
| 32 | GO:0009926: auxin polar transport | 6.60E-04 |
| 33 | GO:0006954: inflammatory response | 6.69E-04 |
| 34 | GO:0006518: peptide metabolic process | 6.69E-04 |
| 35 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.90E-04 |
| 36 | GO:0009152: purine ribonucleotide biosynthetic process | 9.55E-04 |
| 37 | GO:0046653: tetrahydrofolate metabolic process | 9.55E-04 |
| 38 | GO:0080170: hydrogen peroxide transmembrane transport | 9.55E-04 |
| 39 | GO:0009800: cinnamic acid biosynthetic process | 9.55E-04 |
| 40 | GO:1901332: negative regulation of lateral root development | 9.55E-04 |
| 41 | GO:2001141: regulation of RNA biosynthetic process | 9.55E-04 |
| 42 | GO:0010371: regulation of gibberellin biosynthetic process | 9.55E-04 |
| 43 | GO:0045727: positive regulation of translation | 1.27E-03 |
| 44 | GO:0015994: chlorophyll metabolic process | 1.27E-03 |
| 45 | GO:0030104: water homeostasis | 1.27E-03 |
| 46 | GO:0010109: regulation of photosynthesis | 1.27E-03 |
| 47 | GO:0034220: ion transmembrane transport | 1.29E-03 |
| 48 | GO:0000413: protein peptidyl-prolyl isomerization | 1.29E-03 |
| 49 | GO:0006564: L-serine biosynthetic process | 1.61E-03 |
| 50 | GO:0031365: N-terminal protein amino acid modification | 1.61E-03 |
| 51 | GO:0006461: protein complex assembly | 1.61E-03 |
| 52 | GO:0000470: maturation of LSU-rRNA | 1.98E-03 |
| 53 | GO:0006559: L-phenylalanine catabolic process | 1.98E-03 |
| 54 | GO:0009913: epidermal cell differentiation | 1.98E-03 |
| 55 | GO:0010190: cytochrome b6f complex assembly | 1.98E-03 |
| 56 | GO:0006596: polyamine biosynthetic process | 1.98E-03 |
| 57 | GO:0006561: proline biosynthetic process | 1.98E-03 |
| 58 | GO:0048759: xylem vessel member cell differentiation | 1.98E-03 |
| 59 | GO:0006751: glutathione catabolic process | 1.98E-03 |
| 60 | GO:0048827: phyllome development | 1.98E-03 |
| 61 | GO:0071805: potassium ion transmembrane transport | 2.19E-03 |
| 62 | GO:0042372: phylloquinone biosynthetic process | 2.38E-03 |
| 63 | GO:0010019: chloroplast-nucleus signaling pathway | 2.38E-03 |
| 64 | GO:0010027: thylakoid membrane organization | 2.46E-03 |
| 65 | GO:0006810: transport | 2.64E-03 |
| 66 | GO:0042128: nitrate assimilation | 2.74E-03 |
| 67 | GO:0010196: nonphotochemical quenching | 2.80E-03 |
| 68 | GO:0050829: defense response to Gram-negative bacterium | 2.80E-03 |
| 69 | GO:0009645: response to low light intensity stimulus | 2.80E-03 |
| 70 | GO:0006400: tRNA modification | 2.80E-03 |
| 71 | GO:0018298: protein-chromophore linkage | 3.20E-03 |
| 72 | GO:0008610: lipid biosynthetic process | 3.24E-03 |
| 73 | GO:0046620: regulation of organ growth | 3.24E-03 |
| 74 | GO:0030091: protein repair | 3.24E-03 |
| 75 | GO:0010311: lateral root formation | 3.36E-03 |
| 76 | GO:0009657: plastid organization | 3.71E-03 |
| 77 | GO:0017004: cytochrome complex assembly | 3.71E-03 |
| 78 | GO:0009637: response to blue light | 4.05E-03 |
| 79 | GO:0009051: pentose-phosphate shunt, oxidative branch | 4.20E-03 |
| 80 | GO:0006098: pentose-phosphate shunt | 4.20E-03 |
| 81 | GO:0034765: regulation of ion transmembrane transport | 4.20E-03 |
| 82 | GO:0000373: Group II intron splicing | 4.20E-03 |
| 83 | GO:0006412: translation | 4.31E-03 |
| 84 | GO:0009658: chloroplast organization | 5.15E-03 |
| 85 | GO:0010114: response to red light | 5.21E-03 |
| 86 | GO:0009688: abscisic acid biosynthetic process | 5.24E-03 |
| 87 | GO:0048829: root cap development | 5.24E-03 |
| 88 | GO:0009416: response to light stimulus | 5.66E-03 |
| 89 | GO:0000038: very long-chain fatty acid metabolic process | 5.79E-03 |
| 90 | GO:0008285: negative regulation of cell proliferation | 5.79E-03 |
| 91 | GO:0006879: cellular iron ion homeostasis | 5.79E-03 |
| 92 | GO:0006352: DNA-templated transcription, initiation | 5.79E-03 |
| 93 | GO:0009750: response to fructose | 5.79E-03 |
| 94 | GO:0048765: root hair cell differentiation | 5.79E-03 |
| 95 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.35E-03 |
| 96 | GO:0010628: positive regulation of gene expression | 6.94E-03 |
| 97 | GO:0006108: malate metabolic process | 6.94E-03 |
| 98 | GO:0010229: inflorescence development | 6.94E-03 |
| 99 | GO:0006094: gluconeogenesis | 6.94E-03 |
| 100 | GO:0006364: rRNA processing | 7.02E-03 |
| 101 | GO:0006813: potassium ion transport | 7.02E-03 |
| 102 | GO:0019253: reductive pentose-phosphate cycle | 7.55E-03 |
| 103 | GO:0010540: basipetal auxin transport | 7.55E-03 |
| 104 | GO:0009225: nucleotide-sugar metabolic process | 8.18E-03 |
| 105 | GO:0006096: glycolytic process | 8.30E-03 |
| 106 | GO:0006833: water transport | 8.82E-03 |
| 107 | GO:0000027: ribosomal large subunit assembly | 9.48E-03 |
| 108 | GO:0010073: meristem maintenance | 1.02E-02 |
| 109 | GO:0006825: copper ion transport | 1.02E-02 |
| 110 | GO:0031408: oxylipin biosynthetic process | 1.09E-02 |
| 111 | GO:0003333: amino acid transmembrane transport | 1.09E-02 |
| 112 | GO:0035428: hexose transmembrane transport | 1.16E-02 |
| 113 | GO:0010227: floral organ abscission | 1.23E-02 |
| 114 | GO:0008152: metabolic process | 1.26E-02 |
| 115 | GO:0009306: protein secretion | 1.31E-02 |
| 116 | GO:0042335: cuticle development | 1.46E-02 |
| 117 | GO:0042391: regulation of membrane potential | 1.46E-02 |
| 118 | GO:0010087: phloem or xylem histogenesis | 1.46E-02 |
| 119 | GO:0009958: positive gravitropism | 1.54E-02 |
| 120 | GO:0010182: sugar mediated signaling pathway | 1.54E-02 |
| 121 | GO:0046323: glucose import | 1.54E-02 |
| 122 | GO:0006633: fatty acid biosynthetic process | 1.58E-02 |
| 123 | GO:0048825: cotyledon development | 1.70E-02 |
| 124 | GO:0009451: RNA modification | 1.78E-02 |
| 125 | GO:0071554: cell wall organization or biogenesis | 1.79E-02 |
| 126 | GO:0002229: defense response to oomycetes | 1.79E-02 |
| 127 | GO:0000302: response to reactive oxygen species | 1.79E-02 |
| 128 | GO:0009735: response to cytokinin | 2.05E-02 |
| 129 | GO:0009911: positive regulation of flower development | 2.32E-02 |
| 130 | GO:0001666: response to hypoxia | 2.32E-02 |
| 131 | GO:0016311: dephosphorylation | 2.71E-02 |
| 132 | GO:0009817: defense response to fungus, incompatible interaction | 2.81E-02 |
| 133 | GO:0009407: toxin catabolic process | 3.01E-02 |
| 134 | GO:0010218: response to far red light | 3.01E-02 |
| 135 | GO:0006865: amino acid transport | 3.22E-02 |
| 136 | GO:0009853: photorespiration | 3.32E-02 |
| 137 | GO:0045087: innate immune response | 3.32E-02 |
| 138 | GO:0034599: cellular response to oxidative stress | 3.43E-02 |
| 139 | GO:0006099: tricarboxylic acid cycle | 3.43E-02 |
| 140 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.44E-02 |
| 141 | GO:0006839: mitochondrial transport | 3.65E-02 |
| 142 | GO:0030001: metal ion transport | 3.65E-02 |
| 143 | GO:0051707: response to other organism | 3.98E-02 |
| 144 | GO:0009640: photomorphogenesis | 3.98E-02 |
| 145 | GO:0009644: response to high light intensity | 4.21E-02 |
| 146 | GO:0009636: response to toxic substance | 4.32E-02 |
| 147 | GO:0006855: drug transmembrane transport | 4.44E-02 |
| 148 | GO:0016042: lipid catabolic process | 4.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 2 | GO:0010487: thermospermine synthase activity | 0.00E+00 |
| 3 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 4 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 5 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 6 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.89E-07 |
| 7 | GO:0005528: FK506 binding | 8.17E-07 |
| 8 | GO:0019843: rRNA binding | 1.79E-06 |
| 9 | GO:0045485: omega-6 fatty acid desaturase activity | 1.82E-04 |
| 10 | GO:0016768: spermine synthase activity | 1.82E-04 |
| 11 | GO:0004333: fumarate hydratase activity | 1.82E-04 |
| 12 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.82E-04 |
| 13 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.10E-04 |
| 14 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.10E-04 |
| 15 | GO:0047746: chlorophyllase activity | 4.10E-04 |
| 16 | GO:0003839: gamma-glutamylcyclotransferase activity | 4.10E-04 |
| 17 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.10E-04 |
| 18 | GO:0008266: poly(U) RNA binding | 5.21E-04 |
| 19 | GO:0031409: pigment binding | 6.48E-04 |
| 20 | GO:0050734: hydroxycinnamoyltransferase activity | 6.69E-04 |
| 21 | GO:0045548: phenylalanine ammonia-lyase activity | 6.69E-04 |
| 22 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.69E-04 |
| 23 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.69E-04 |
| 24 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 6.69E-04 |
| 25 | GO:0015079: potassium ion transmembrane transporter activity | 7.90E-04 |
| 26 | GO:0043023: ribosomal large subunit binding | 9.55E-04 |
| 27 | GO:0008097: 5S rRNA binding | 9.55E-04 |
| 28 | GO:0001872: (1->3)-beta-D-glucan binding | 9.55E-04 |
| 29 | GO:0016987: sigma factor activity | 1.27E-03 |
| 30 | GO:0010328: auxin influx transmembrane transporter activity | 1.27E-03 |
| 31 | GO:0050378: UDP-glucuronate 4-epimerase activity | 1.27E-03 |
| 32 | GO:0042277: peptide binding | 1.27E-03 |
| 33 | GO:0004659: prenyltransferase activity | 1.27E-03 |
| 34 | GO:0001053: plastid sigma factor activity | 1.27E-03 |
| 35 | GO:0010011: auxin binding | 1.27E-03 |
| 36 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.27E-03 |
| 37 | GO:0004332: fructose-bisphosphate aldolase activity | 1.98E-03 |
| 38 | GO:0004130: cytochrome-c peroxidase activity | 1.98E-03 |
| 39 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.98E-03 |
| 40 | GO:0016208: AMP binding | 1.98E-03 |
| 41 | GO:0016688: L-ascorbate peroxidase activity | 1.98E-03 |
| 42 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.98E-03 |
| 43 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.38E-03 |
| 44 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.38E-03 |
| 45 | GO:0005242: inward rectifier potassium channel activity | 2.38E-03 |
| 46 | GO:0015250: water channel activity | 2.46E-03 |
| 47 | GO:0016168: chlorophyll binding | 2.60E-03 |
| 48 | GO:0008235: metalloexopeptidase activity | 2.80E-03 |
| 49 | GO:0004033: aldo-keto reductase (NADP) activity | 3.24E-03 |
| 50 | GO:0043022: ribosome binding | 3.24E-03 |
| 51 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.71E-03 |
| 52 | GO:0005509: calcium ion binding | 3.99E-03 |
| 53 | GO:0050661: NADP binding | 4.61E-03 |
| 54 | GO:0005381: iron ion transmembrane transporter activity | 4.71E-03 |
| 55 | GO:0003735: structural constituent of ribosome | 4.79E-03 |
| 56 | GO:0016788: hydrolase activity, acting on ester bonds | 5.28E-03 |
| 57 | GO:0015386: potassium:proton antiporter activity | 5.79E-03 |
| 58 | GO:0004177: aminopeptidase activity | 5.79E-03 |
| 59 | GO:0051287: NAD binding | 6.31E-03 |
| 60 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.94E-03 |
| 61 | GO:0052689: carboxylic ester hydrolase activity | 7.69E-03 |
| 62 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 8.82E-03 |
| 63 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 8.82E-03 |
| 64 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 8.82E-03 |
| 65 | GO:0004871: signal transducer activity | 9.04E-03 |
| 66 | GO:0016746: transferase activity, transferring acyl groups | 1.03E-02 |
| 67 | GO:0030551: cyclic nucleotide binding | 1.46E-02 |
| 68 | GO:0030276: clathrin binding | 1.54E-02 |
| 69 | GO:0005355: glucose transmembrane transporter activity | 1.62E-02 |
| 70 | GO:0050662: coenzyme binding | 1.62E-02 |
| 71 | GO:0016787: hydrolase activity | 1.72E-02 |
| 72 | GO:0005215: transporter activity | 1.91E-02 |
| 73 | GO:0016791: phosphatase activity | 2.05E-02 |
| 74 | GO:0016413: O-acetyltransferase activity | 2.23E-02 |
| 75 | GO:0016597: amino acid binding | 2.23E-02 |
| 76 | GO:0046872: metal ion binding | 2.43E-02 |
| 77 | GO:0016491: oxidoreductase activity | 2.48E-02 |
| 78 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 2.51E-02 |
| 79 | GO:0030247: polysaccharide binding | 2.61E-02 |
| 80 | GO:0004721: phosphoprotein phosphatase activity | 2.61E-02 |
| 81 | GO:0004683: calmodulin-dependent protein kinase activity | 2.61E-02 |
| 82 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.81E-02 |
| 83 | GO:0015238: drug transmembrane transporter activity | 2.91E-02 |
| 84 | GO:0004222: metalloendopeptidase activity | 3.01E-02 |
| 85 | GO:0003993: acid phosphatase activity | 3.43E-02 |
| 86 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.65E-02 |
| 87 | GO:0004364: glutathione transferase activity | 3.87E-02 |
| 88 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.21E-02 |
| 89 | GO:0015293: symporter activity | 4.32E-02 |
| 90 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.27E-35 |
| 2 | GO:0009941: chloroplast envelope | 1.11E-18 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.63E-17 |
| 4 | GO:0009579: thylakoid | 2.06E-16 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 1.65E-15 |
| 6 | GO:0009570: chloroplast stroma | 6.55E-13 |
| 7 | GO:0009534: chloroplast thylakoid | 3.37E-11 |
| 8 | GO:0031977: thylakoid lumen | 5.27E-11 |
| 9 | GO:0009654: photosystem II oxygen evolving complex | 1.03E-06 |
| 10 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.68E-06 |
| 11 | GO:0019898: extrinsic component of membrane | 5.46E-06 |
| 12 | GO:0005840: ribosome | 7.28E-05 |
| 13 | GO:0009782: photosystem I antenna complex | 1.82E-04 |
| 14 | GO:0043674: columella | 1.82E-04 |
| 15 | GO:0045239: tricarboxylic acid cycle enzyme complex | 1.82E-04 |
| 16 | GO:0031969: chloroplast membrane | 2.36E-04 |
| 17 | GO:0030095: chloroplast photosystem II | 5.21E-04 |
| 18 | GO:0016020: membrane | 5.58E-04 |
| 19 | GO:0030076: light-harvesting complex | 5.83E-04 |
| 20 | GO:0009523: photosystem II | 1.60E-03 |
| 21 | GO:0010287: plastoglobule | 1.84E-03 |
| 22 | GO:0030529: intracellular ribonucleoprotein complex | 2.46E-03 |
| 23 | GO:0009533: chloroplast stromal thylakoid | 2.80E-03 |
| 24 | GO:0042807: central vacuole | 2.80E-03 |
| 25 | GO:0009986: cell surface | 2.80E-03 |
| 26 | GO:0016021: integral component of membrane | 5.51E-03 |
| 27 | GO:0042651: thylakoid membrane | 1.02E-02 |
| 28 | GO:0030136: clathrin-coated vesicle | 1.38E-02 |
| 29 | GO:0005770: late endosome | 1.54E-02 |
| 30 | GO:0009522: photosystem I | 1.62E-02 |
| 31 | GO:0005887: integral component of plasma membrane | 1.64E-02 |
| 32 | GO:0032580: Golgi cisterna membrane | 2.05E-02 |
| 33 | GO:0005778: peroxisomal membrane | 2.14E-02 |
| 34 | GO:0009536: plastid | 2.23E-02 |
| 35 | GO:0015934: large ribosomal subunit | 3.11E-02 |
| 36 | GO:0022625: cytosolic large ribosomal subunit | 3.50E-02 |
| 37 | GO:0048046: apoplast | 4.16E-02 |