Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G23640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071311: cellular response to acetate0.00E+00
2GO:0071260: cellular response to mechanical stimulus0.00E+00
3GO:0042906: xanthine transport0.00E+00
4GO:0010203: response to very low fluence red light stimulus0.00E+00
5GO:0043171: peptide catabolic process0.00E+00
6GO:0010219: regulation of vernalization response0.00E+00
7GO:0012502: induction of programmed cell death0.00E+00
8GO:0010378: temperature compensation of the circadian clock0.00E+00
9GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
10GO:0018298: protein-chromophore linkage1.75E-09
11GO:0009768: photosynthesis, light harvesting in photosystem I3.88E-08
12GO:0007623: circadian rhythm8.51E-07
13GO:0009416: response to light stimulus2.33E-06
14GO:0009645: response to low light intensity stimulus2.72E-06
15GO:0010218: response to far red light2.87E-06
16GO:0009409: response to cold1.81E-05
17GO:0010600: regulation of auxin biosynthetic process3.78E-05
18GO:0009817: defense response to fungus, incompatible interaction4.74E-05
19GO:0009637: response to blue light7.43E-05
20GO:0042542: response to hydrogen peroxide1.10E-04
21GO:0010244: response to low fluence blue light stimulus by blue low-fluence system1.23E-04
22GO:0009644: response to high light intensity1.36E-04
23GO:0010161: red light signaling pathway1.62E-04
24GO:0009769: photosynthesis, light harvesting in photosystem II1.62E-04
25GO:0009585: red, far-red light phototransduction2.00E-04
26GO:0010928: regulation of auxin mediated signaling pathway2.06E-04
27GO:0009819: drought recovery2.06E-04
28GO:1990641: response to iron ion starvation2.32E-04
29GO:0010362: negative regulation of anion channel activity by blue light2.32E-04
30GO:1902265: abscisic acid homeostasis2.32E-04
31GO:0015812: gamma-aminobutyric acid transport2.32E-04
32GO:0032958: inositol phosphate biosynthetic process2.32E-04
33GO:0006369: termination of RNA polymerase II transcription2.32E-04
34GO:0010201: response to continuous far red light stimulus by the high-irradiance response system2.32E-04
35GO:0009638: phototropism3.67E-04
36GO:0006816: calcium ion transport4.97E-04
37GO:0015720: allantoin transport5.15E-04
38GO:0010155: regulation of proton transport5.15E-04
39GO:0032509: endosome transport via multivesicular body sorting pathway5.15E-04
40GO:0048833: specification of floral organ number5.15E-04
41GO:0015857: uracil transport5.15E-04
42GO:0006101: citrate metabolic process5.15E-04
43GO:0080171: lytic vacuole organization5.15E-04
44GO:0051170: nuclear import5.15E-04
45GO:0048209: regulation of vesicle targeting, to, from or within Golgi5.15E-04
46GO:0030003: cellular cation homeostasis5.15E-04
47GO:0001736: establishment of planar polarity5.15E-04
48GO:0015914: phospholipid transport5.15E-04
49GO:0015979: photosynthesis5.72E-04
50GO:0000160: phosphorelay signal transduction system5.83E-04
51GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process6.45E-04
52GO:2000012: regulation of auxin polar transport6.45E-04
53GO:0042256: mature ribosome assembly8.37E-04
54GO:1902448: positive regulation of shade avoidance8.37E-04
55GO:0042344: indole glucosinolate catabolic process8.37E-04
56GO:0032012: regulation of ARF protein signal transduction8.37E-04
57GO:0071230: cellular response to amino acid stimulus8.37E-04
58GO:0016255: attachment of GPI anchor to protein8.37E-04
59GO:0017006: protein-tetrapyrrole linkage8.37E-04
60GO:0006598: polyamine catabolic process8.37E-04
61GO:0071705: nitrogen compound transport8.37E-04
62GO:0090630: activation of GTPase activity8.37E-04
63GO:0009640: photomorphogenesis1.01E-03
64GO:0010114: response to red light1.01E-03
65GO:0006874: cellular calcium ion homeostasis1.09E-03
66GO:0006020: inositol metabolic process1.19E-03
67GO:0010601: positive regulation of auxin biosynthetic process1.19E-03
68GO:0009584: detection of visible light1.19E-03
69GO:0015749: monosaccharide transport1.19E-03
70GO:1901332: negative regulation of lateral root development1.19E-03
71GO:0048511: rhythmic process1.20E-03
72GO:0009269: response to desiccation1.20E-03
73GO:0010017: red or far-red light signaling pathway1.31E-03
74GO:0015743: malate transport1.59E-03
75GO:0048442: sepal development1.59E-03
76GO:0009765: photosynthesis, light harvesting1.59E-03
77GO:0030104: water homeostasis1.59E-03
78GO:0022622: root system development1.59E-03
79GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain1.59E-03
80GO:0006370: 7-methylguanosine mRNA capping1.59E-03
81GO:0010508: positive regulation of autophagy1.59E-03
82GO:0006646: phosphatidylethanolamine biosynthetic process1.59E-03
83GO:0009687: abscisic acid metabolic process1.59E-03
84GO:0000380: alternative mRNA splicing, via spliceosome2.03E-03
85GO:0048578: positive regulation of long-day photoperiodism, flowering2.03E-03
86GO:0009904: chloroplast accumulation movement2.03E-03
87GO:0006656: phosphatidylcholine biosynthetic process2.03E-03
88GO:0043097: pyrimidine nucleoside salvage2.03E-03
89GO:0006814: sodium ion transport2.09E-03
90GO:0080167: response to karrikin2.22E-03
91GO:0042732: D-xylose metabolic process2.50E-03
92GO:0045040: protein import into mitochondrial outer membrane2.50E-03
93GO:0031053: primary miRNA processing2.50E-03
94GO:0006206: pyrimidine nucleobase metabolic process2.50E-03
95GO:0000741: karyogamy2.50E-03
96GO:0035556: intracellular signal transduction2.70E-03
97GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity3.00E-03
98GO:0045926: negative regulation of growth3.00E-03
99GO:0000911: cytokinesis by cell plate formation3.00E-03
100GO:0017148: negative regulation of translation3.00E-03
101GO:0009942: longitudinal axis specification3.00E-03
102GO:0009903: chloroplast avoidance movement3.00E-03
103GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.00E-03
104GO:0010286: heat acclimation3.08E-03
105GO:0048437: floral organ development3.54E-03
106GO:0010038: response to metal ion3.54E-03
107GO:0010044: response to aluminum ion3.54E-03
108GO:0032880: regulation of protein localization3.54E-03
109GO:0009737: response to abscisic acid3.64E-03
110GO:0006950: response to stress4.07E-03
111GO:0007155: cell adhesion4.10E-03
112GO:0009061: anaerobic respiration4.10E-03
113GO:0009415: response to water4.10E-03
114GO:0009704: de-etiolation4.10E-03
115GO:0032508: DNA duplex unwinding4.10E-03
116GO:0006102: isocitrate metabolic process4.10E-03
117GO:0009880: embryonic pattern specification4.70E-03
118GO:0009827: plant-type cell wall modification4.70E-03
119GO:0001510: RNA methylation4.70E-03
120GO:0010228: vegetative to reproductive phase transition of meristem4.86E-03
121GO:0006811: ion transport4.97E-03
122GO:0010119: regulation of stomatal movement5.21E-03
123GO:0046685: response to arsenic-containing substance5.32E-03
124GO:0006098: pentose-phosphate shunt5.32E-03
125GO:0090333: regulation of stomatal closure5.32E-03
126GO:0046916: cellular transition metal ion homeostasis5.32E-03
127GO:0010468: regulation of gene expression5.75E-03
128GO:0030042: actin filament depolymerization5.97E-03
129GO:0048354: mucilage biosynthetic process involved in seed coat development5.97E-03
130GO:0055062: phosphate ion homeostasis6.65E-03
131GO:0010162: seed dormancy process6.65E-03
132GO:0009970: cellular response to sulfate starvation6.65E-03
133GO:0006995: cellular response to nitrogen starvation6.65E-03
134GO:0048441: petal development6.65E-03
135GO:0009682: induced systemic resistance7.35E-03
136GO:0052544: defense response by callose deposition in cell wall7.35E-03
137GO:0048765: root hair cell differentiation7.35E-03
138GO:0000209: protein polyubiquitination7.65E-03
139GO:0008643: carbohydrate transport7.96E-03
140GO:0006355: regulation of transcription, DNA-templated8.82E-03
141GO:0006626: protein targeting to mitochondrion8.84E-03
142GO:0009785: blue light signaling pathway8.84E-03
143GO:0000165: MAPK cascade8.91E-03
144GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process8.91E-03
145GO:0009738: abscisic acid-activated signaling pathway9.11E-03
146GO:0010540: basipetal auxin transport9.62E-03
147GO:0009266: response to temperature stimulus9.62E-03
148GO:0048440: carpel development9.62E-03
149GO:0007034: vacuolar transport9.62E-03
150GO:0007015: actin filament organization9.62E-03
151GO:0007165: signal transduction1.04E-02
152GO:0019853: L-ascorbic acid biosynthetic process1.04E-02
153GO:0090351: seedling development1.04E-02
154GO:0010030: positive regulation of seed germination1.04E-02
155GO:0044550: secondary metabolite biosynthetic process1.17E-02
156GO:0006406: mRNA export from nucleus1.21E-02
157GO:0016575: histone deacetylation1.30E-02
158GO:0009695: jasmonic acid biosynthetic process1.30E-02
159GO:0045892: negative regulation of transcription, DNA-templated1.35E-02
160GO:0003333: amino acid transmembrane transport1.39E-02
161GO:0019748: secondary metabolic process1.48E-02
162GO:0006012: galactose metabolic process1.57E-02
163GO:0009693: ethylene biosynthetic process1.57E-02
164GO:0071215: cellular response to abscisic acid stimulus1.57E-02
165GO:0010227: floral organ abscission1.57E-02
166GO:0048443: stamen development1.67E-02
167GO:0019722: calcium-mediated signaling1.67E-02
168GO:0009408: response to heat1.73E-02
169GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.77E-02
170GO:0070417: cellular response to cold1.77E-02
171GO:0008284: positive regulation of cell proliferation1.77E-02
172GO:0000226: microtubule cytoskeleton organization1.87E-02
173GO:0034220: ion transmembrane transport1.87E-02
174GO:0010501: RNA secondary structure unwinding1.87E-02
175GO:0000413: protein peptidyl-prolyl isomerization1.87E-02
176GO:0010087: phloem or xylem histogenesis1.87E-02
177GO:0009958: positive gravitropism1.97E-02
178GO:0010197: polar nucleus fusion1.97E-02
179GO:0010182: sugar mediated signaling pathway1.97E-02
180GO:0046323: glucose import1.97E-02
181GO:0042752: regulation of circadian rhythm2.07E-02
182GO:0008654: phospholipid biosynthetic process2.18E-02
183GO:0009556: microsporogenesis2.18E-02
184GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.29E-02
185GO:0006635: fatty acid beta-oxidation2.29E-02
186GO:0009630: gravitropism2.40E-02
187GO:1901657: glycosyl compound metabolic process2.51E-02
188GO:0071281: cellular response to iron ion2.51E-02
189GO:0009651: response to salt stress2.57E-02
190GO:0019760: glucosinolate metabolic process2.62E-02
191GO:0006914: autophagy2.62E-02
192GO:0009414: response to water deprivation2.66E-02
193GO:0008380: RNA splicing2.93E-02
194GO:0009617: response to bacterium2.93E-02
195GO:0001666: response to hypoxia2.98E-02
196GO:0009911: positive regulation of flower development2.98E-02
197GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.10E-02
198GO:0010029: regulation of seed germination3.10E-02
199GO:0009908: flower development3.12E-02
200GO:0048573: photoperiodism, flowering3.34E-02
201GO:0048481: plant ovule development3.59E-02
202GO:0009826: unidimensional cell growth3.65E-02
203GO:0010311: lateral root formation3.72E-02
204GO:0048527: lateral root development3.98E-02
205GO:0009631: cold acclimation3.98E-02
206GO:0010043: response to zinc ion3.98E-02
207GO:0006970: response to osmotic stress4.08E-02
208GO:0045087: innate immune response4.25E-02
209GO:0016051: carbohydrate biosynthetic process4.25E-02
210GO:0006099: tricarboxylic acid cycle4.39E-02
211GO:0030001: metal ion transport4.67E-02
212GO:0006897: endocytosis4.81E-02
213GO:0006457: protein folding4.85E-02
214GO:0016192: vesicle-mediated transport4.93E-02
RankGO TermAdjusted P value
1GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
2GO:0005272: sodium channel activity0.00E+00
3GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
4GO:0042907: xanthine transmembrane transporter activity0.00E+00
5GO:0010349: L-galactose dehydrogenase activity0.00E+00
6GO:0009045: xylose isomerase activity0.00E+00
7GO:0080082: esculin beta-glucosidase activity0.00E+00
8GO:0004482: mRNA (guanine-N7-)-methyltransferase activity0.00E+00
9GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
10GO:0010292: GTP:GDP antiporter activity0.00E+00
11GO:0004567: beta-mannosidase activity0.00E+00
12GO:0015276: ligand-gated ion channel activity0.00E+00
13GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
14GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
15GO:0047668: amygdalin beta-glucosidase activity0.00E+00
16GO:0031409: pigment binding2.12E-08
17GO:0016168: chlorophyll binding1.26E-06
18GO:0005253: anion channel activity3.78E-05
19GO:0009679: hexose:proton symporter activity2.32E-04
20GO:0000829: inositol heptakisphosphate kinase activity2.32E-04
21GO:0010013: N-1-naphthylphthalamic acid binding2.32E-04
22GO:0080079: cellobiose glucosidase activity2.32E-04
23GO:0008692: 3-hydroxybutyryl-CoA epimerase activity2.32E-04
24GO:0046870: cadmium ion binding2.32E-04
25GO:0070006: metalloaminopeptidase activity2.32E-04
26GO:0008066: glutamate receptor activity2.32E-04
27GO:0000828: inositol hexakisphosphate kinase activity2.32E-04
28GO:0015185: gamma-aminobutyric acid transmembrane transporter activity2.32E-04
29GO:0031516: far-red light photoreceptor activity2.32E-04
30GO:0033857: diphosphoinositol-pentakisphosphate kinase activity2.32E-04
31GO:0005515: protein binding4.05E-04
32GO:0009883: red or far-red light photoreceptor activity5.15E-04
33GO:0004609: phosphatidylserine decarboxylase activity5.15E-04
34GO:0047216: inositol 3-alpha-galactosyltransferase activity5.15E-04
35GO:0003994: aconitate hydratase activity5.15E-04
36GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity5.15E-04
37GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.15E-04
38GO:0015180: L-alanine transmembrane transporter activity5.15E-04
39GO:0001047: core promoter binding5.15E-04
40GO:0032791: lead ion binding5.15E-04
41GO:0005274: allantoin uptake transmembrane transporter activity5.15E-04
42GO:0000155: phosphorelay sensor kinase activity6.45E-04
43GO:0005262: calcium channel activity6.45E-04
44GO:0031624: ubiquitin conjugating enzyme binding7.26E-04
45GO:0004970: ionotropic glutamate receptor activity8.11E-04
46GO:0005217: intracellular ligand-gated ion channel activity8.11E-04
47GO:0046592: polyamine oxidase activity8.37E-04
48GO:0017150: tRNA dihydrouridine synthase activity8.37E-04
49GO:0008020: G-protein coupled photoreceptor activity8.37E-04
50GO:0004096: catalase activity8.37E-04
51GO:0046872: metal ion binding1.12E-03
52GO:0015189: L-lysine transmembrane transporter activity1.19E-03
53GO:0048027: mRNA 5'-UTR binding1.19E-03
54GO:0015181: arginine transmembrane transporter activity1.19E-03
55GO:0009882: blue light photoreceptor activity1.19E-03
56GO:0004165: dodecenoyl-CoA delta-isomerase activity1.19E-03
57GO:0004300: enoyl-CoA hydratase activity1.19E-03
58GO:0004707: MAP kinase activity1.20E-03
59GO:0005086: ARF guanyl-nucleotide exchange factor activity1.59E-03
60GO:0015210: uracil transmembrane transporter activity1.59E-03
61GO:0008526: phosphatidylinositol transporter activity1.59E-03
62GO:0005313: L-glutamate transmembrane transporter activity1.59E-03
63GO:0042277: peptide binding1.59E-03
64GO:0010294: abscisic acid glucosyltransferase activity2.03E-03
65GO:0015145: monosaccharide transmembrane transporter activity2.03E-03
66GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.03E-03
67GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.03E-03
68GO:0004629: phospholipase C activity2.50E-03
69GO:0019137: thioglucosidase activity2.50E-03
70GO:0000293: ferric-chelate reductase activity2.50E-03
71GO:0005247: voltage-gated chloride channel activity2.50E-03
72GO:0000156: phosphorelay response regulator activity2.73E-03
73GO:0004849: uridine kinase activity3.00E-03
74GO:0004435: phosphatidylinositol phospholipase C activity3.00E-03
75GO:0005261: cation channel activity3.00E-03
76GO:0009881: photoreceptor activity3.54E-03
77GO:0015140: malate transmembrane transporter activity3.54E-03
78GO:0102483: scopolin beta-glucosidase activity4.07E-03
79GO:0004525: ribonuclease III activity4.10E-03
80GO:0004033: aldo-keto reductase (NADP) activity4.10E-03
81GO:0005351: sugar:proton symporter activity4.46E-03
82GO:0005267: potassium channel activity4.70E-03
83GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.70E-03
84GO:0001104: RNA polymerase II transcription cofactor activity4.70E-03
85GO:0050897: cobalt ion binding5.21E-03
86GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity5.32E-03
87GO:0008270: zinc ion binding5.66E-03
88GO:0042802: identical protein binding6.23E-03
89GO:0008422: beta-glucosidase activity6.23E-03
90GO:0004673: protein histidine kinase activity6.65E-03
91GO:0047372: acylglycerol lipase activity7.35E-03
92GO:0004177: aminopeptidase activity7.35E-03
93GO:0000976: transcription regulatory region sequence-specific DNA binding8.08E-03
94GO:0004565: beta-galactosidase activity8.84E-03
95GO:0005315: inorganic phosphate transmembrane transporter activity8.84E-03
96GO:0008083: growth factor activity9.62E-03
97GO:0008131: primary amine oxidase activity9.62E-03
98GO:0003712: transcription cofactor activity1.04E-02
99GO:0061630: ubiquitin protein ligase activity1.12E-02
100GO:0004407: histone deacetylase activity1.21E-02
101GO:0051087: chaperone binding1.30E-02
102GO:0019706: protein-cysteine S-palmitoyltransferase activity1.39E-02
103GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.46E-02
104GO:0004722: protein serine/threonine phosphatase activity1.49E-02
105GO:0008514: organic anion transmembrane transporter activity1.67E-02
106GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.83E-02
107GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity1.97E-02
108GO:0010181: FMN binding2.07E-02
109GO:0015144: carbohydrate transmembrane transporter activity2.13E-02
110GO:0015297: antiporter activity2.34E-02
111GO:0005509: calcium ion binding2.44E-02
112GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.59E-02
113GO:0005096: GTPase activator activity3.72E-02
114GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.85E-02
115GO:0003697: single-stranded DNA binding4.25E-02
116GO:0051539: 4 iron, 4 sulfur cluster binding4.67E-02
117GO:0004497: monooxygenase activity4.69E-02
118GO:0004672: protein kinase activity4.80E-02
119GO:0003729: mRNA binding4.89E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex1.53E-08
2GO:0010287: plastoglobule4.26E-06
3GO:0009522: photosystem I9.69E-06
4GO:0005777: peroxisome1.85E-04
5GO:0009523: photosystem II2.16E-04
6GO:0042765: GPI-anchor transamidase complex8.37E-04
7GO:0009579: thylakoid8.71E-04
8GO:0010445: nuclear dicing body1.59E-03
9GO:0009898: cytoplasmic side of plasma membrane1.59E-03
10GO:0032586: protein storage vacuole membrane1.59E-03
11GO:0009517: PSII associated light-harvesting complex II1.59E-03
12GO:0034707: chloride channel complex2.50E-03
13GO:0070847: core mediator complex2.50E-03
14GO:0005851: eukaryotic translation initiation factor 2B complex2.50E-03
15GO:0000815: ESCRT III complex3.00E-03
16GO:0009534: chloroplast thylakoid3.42E-03
17GO:0009986: cell surface3.54E-03
18GO:0000151: ubiquitin ligase complex4.50E-03
19GO:0000307: cyclin-dependent protein kinase holoenzyme complex4.70E-03
20GO:0005742: mitochondrial outer membrane translocase complex4.70E-03
21GO:0000326: protein storage vacuole4.70E-03
22GO:0010494: cytoplasmic stress granule5.32E-03
23GO:0031090: organelle membrane5.32E-03
24GO:0016604: nuclear body5.97E-03
25GO:0009941: chloroplast envelope7.71E-03
26GO:0005737: cytoplasm8.85E-03
27GO:0031966: mitochondrial membrane9.24E-03
28GO:0016021: integral component of membrane1.14E-02
29GO:0005681: spliceosomal complex1.18E-02
30GO:0009535: chloroplast thylakoid membrane1.19E-02
31GO:0016607: nuclear speck1.21E-02
32GO:0042651: thylakoid membrane1.30E-02
33GO:0005741: mitochondrial outer membrane1.39E-02
34GO:0015629: actin cytoskeleton1.57E-02
35GO:0005744: mitochondrial inner membrane presequence translocase complex1.67E-02
36GO:0016020: membrane1.80E-02
37GO:0005802: trans-Golgi network1.95E-02
38GO:0031965: nuclear membrane2.18E-02
39GO:0005622: intracellular2.27E-02
40GO:0016592: mediator complex2.40E-02
41GO:0005886: plasma membrane2.49E-02
42GO:0005773: vacuole2.53E-02
43GO:0000932: P-body2.98E-02
44GO:0005618: cell wall3.49E-02
45GO:0000786: nucleosome4.12E-02
Gene type



Gene DE type