Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G23080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
2GO:0090627: plant epidermal cell differentiation0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0033231: carbohydrate export0.00E+00
6GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
7GO:0010305: leaf vascular tissue pattern formation3.12E-05
8GO:0015995: chlorophyll biosynthetic process9.88E-05
9GO:0015671: oxygen transport1.00E-04
10GO:0043266: regulation of potassium ion transport1.00E-04
11GO:2000021: regulation of ion homeostasis1.00E-04
12GO:0043007: maintenance of rDNA1.00E-04
13GO:0010028: xanthophyll cycle1.00E-04
14GO:1902334: fructose export from vacuole to cytoplasm1.00E-04
15GO:0015755: fructose transport1.00E-04
16GO:0009750: response to fructose1.52E-04
17GO:0010588: cotyledon vascular tissue pattern formation2.03E-04
18GO:0009926: auxin polar transport2.30E-04
19GO:0010541: acropetal auxin transport2.36E-04
20GO:0016122: xanthophyll metabolic process2.36E-04
21GO:0006898: receptor-mediated endocytosis2.36E-04
22GO:0016045: detection of bacterium3.92E-04
23GO:0010359: regulation of anion channel activity3.92E-04
24GO:0010160: formation of animal organ boundary3.92E-04
25GO:0048443: stamen development5.10E-04
26GO:0051513: regulation of monopolar cell growth5.64E-04
27GO:0051639: actin filament network formation5.64E-04
28GO:0043481: anthocyanin accumulation in tissues in response to UV light5.64E-04
29GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity5.64E-04
30GO:0080022: primary root development5.95E-04
31GO:0010087: phloem or xylem histogenesis5.95E-04
32GO:0009958: positive gravitropism6.40E-04
33GO:0048825: cotyledon development7.34E-04
34GO:0042938: dipeptide transport7.50E-04
35GO:0051764: actin crosslink formation7.50E-04
36GO:0015994: chlorophyll metabolic process7.50E-04
37GO:0007275: multicellular organism development9.12E-04
38GO:0010252: auxin homeostasis9.40E-04
39GO:0006656: phosphatidylcholine biosynthetic process9.47E-04
40GO:0009734: auxin-activated signaling pathway1.14E-03
41GO:0009913: epidermal cell differentiation1.16E-03
42GO:0060918: auxin transport1.16E-03
43GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.16E-03
44GO:0009228: thiamine biosynthetic process1.16E-03
45GO:0009942: longitudinal axis specification1.38E-03
46GO:0050829: defense response to Gram-negative bacterium1.62E-03
47GO:0048527: lateral root development1.65E-03
48GO:0010078: maintenance of root meristem identity1.87E-03
49GO:0009642: response to light intensity1.87E-03
50GO:0046620: regulation of organ growth1.87E-03
51GO:0007389: pattern specification process2.14E-03
52GO:0043562: cellular response to nitrogen levels2.14E-03
53GO:0006631: fatty acid metabolic process2.14E-03
54GO:0009657: plastid organization2.14E-03
55GO:0009640: photomorphogenesis2.32E-03
56GO:0055085: transmembrane transport2.33E-03
57GO:0010206: photosystem II repair2.41E-03
58GO:0048589: developmental growth2.41E-03
59GO:0019432: triglyceride biosynthetic process2.41E-03
60GO:0048507: meristem development2.41E-03
61GO:0009638: phototropism2.70E-03
62GO:0006995: cellular response to nitrogen starvation3.00E-03
63GO:0043085: positive regulation of catalytic activity3.31E-03
64GO:1903507: negative regulation of nucleic acid-templated transcription3.31E-03
65GO:0009684: indoleacetic acid biosynthetic process3.31E-03
66GO:0046856: phosphatidylinositol dephosphorylation3.31E-03
67GO:0009698: phenylpropanoid metabolic process3.31E-03
68GO:0052544: defense response by callose deposition in cell wall3.31E-03
69GO:0015706: nitrate transport3.63E-03
70GO:0010152: pollen maturation3.63E-03
71GO:0008361: regulation of cell size3.63E-03
72GO:0032259: methylation3.71E-03
73GO:0048367: shoot system development3.79E-03
74GO:0006094: gluconeogenesis3.95E-03
75GO:0009785: blue light signaling pathway3.95E-03
76GO:0048364: root development4.14E-03
77GO:0010207: photosystem II assembly4.30E-03
78GO:0010540: basipetal auxin transport4.30E-03
79GO:0048467: gynoecium development4.30E-03
80GO:0010030: positive regulation of seed germination4.64E-03
81GO:0006636: unsaturated fatty acid biosynthetic process5.00E-03
82GO:0006833: water transport5.00E-03
83GO:0009944: polarity specification of adaxial/abaxial axis5.37E-03
84GO:0051017: actin filament bundle assembly5.37E-03
85GO:0006289: nucleotide-excision repair5.37E-03
86GO:2000377: regulation of reactive oxygen species metabolic process5.37E-03
87GO:0009733: response to auxin5.64E-03
88GO:0007017: microtubule-based process5.75E-03
89GO:0016114: terpenoid biosynthetic process6.14E-03
90GO:0051260: protein homooligomerization6.14E-03
91GO:0048511: rhythmic process6.14E-03
92GO:2000022: regulation of jasmonic acid mediated signaling pathway6.54E-03
93GO:0007623: circadian rhythm7.61E-03
94GO:0070417: cellular response to cold7.78E-03
95GO:0009789: positive regulation of abscisic acid-activated signaling pathway7.78E-03
96GO:0000271: polysaccharide biosynthetic process8.21E-03
97GO:0034220: ion transmembrane transport8.21E-03
98GO:0042631: cellular response to water deprivation8.21E-03
99GO:0006662: glycerol ether metabolic process8.65E-03
100GO:0009741: response to brassinosteroid8.65E-03
101GO:0045489: pectin biosynthetic process8.65E-03
102GO:0071472: cellular response to salt stress8.65E-03
103GO:0005975: carbohydrate metabolic process8.90E-03
104GO:0007018: microtubule-based movement9.10E-03
105GO:0042752: regulation of circadian rhythm9.10E-03
106GO:0009646: response to absence of light9.10E-03
107GO:0009749: response to glucose9.56E-03
108GO:0009851: auxin biosynthetic process9.56E-03
109GO:0010193: response to ozone1.00E-02
110GO:0010583: response to cyclopentenone1.05E-02
111GO:0009639: response to red or far red light1.15E-02
112GO:0071805: potassium ion transmembrane transport1.20E-02
113GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.52E-02
114GO:0010218: response to far red light1.68E-02
115GO:0007568: aging1.74E-02
116GO:0009910: negative regulation of flower development1.74E-02
117GO:0009631: cold acclimation1.74E-02
118GO:0045454: cell redox homeostasis1.76E-02
119GO:0016051: carbohydrate biosynthetic process1.86E-02
120GO:0009637: response to blue light1.86E-02
121GO:0034599: cellular response to oxidative stress1.91E-02
122GO:0006869: lipid transport1.93E-02
123GO:0006839: mitochondrial transport2.03E-02
124GO:0010114: response to red light2.22E-02
125GO:0009744: response to sucrose2.22E-02
126GO:0031347: regulation of defense response2.55E-02
127GO:0009664: plant-type cell wall organization2.61E-02
128GO:0042538: hyperosmotic salinity response2.61E-02
129GO:0006364: rRNA processing2.75E-02
130GO:0006813: potassium ion transport2.75E-02
131GO:0010224: response to UV-B2.81E-02
132GO:0006857: oligopeptide transport2.88E-02
133GO:0006417: regulation of translation2.95E-02
134GO:0006096: glycolytic process3.09E-02
135GO:0009740: gibberellic acid mediated signaling pathway3.38E-02
136GO:0042545: cell wall modification3.46E-02
137GO:0009908: flower development3.47E-02
138GO:0006396: RNA processing3.61E-02
139GO:0009416: response to light stimulus3.84E-02
140GO:0009611: response to wounding3.92E-02
141GO:0009845: seed germination4.38E-02
142GO:0009790: embryo development4.62E-02
143GO:0006633: fatty acid biosynthetic process4.87E-02
RankGO TermAdjusted P value
1GO:0015284: fructose uniporter activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
4GO:0046422: violaxanthin de-epoxidase activity0.00E+00
5GO:0103007: indole-3-acetate carboxyl methyltransferase activity0.00E+00
6GO:0051749: indole acetic acid carboxyl methyltransferase activity0.00E+00
7GO:0004462: lactoylglutathione lyase activity2.28E-05
8GO:0005344: oxygen transporter activity1.00E-04
9GO:0010329: auxin efflux transmembrane transporter activity2.03E-04
10GO:0080097: L-tryptophan:pyruvate aminotransferase activity2.36E-04
11GO:0019172: glyoxalase III activity2.36E-04
12GO:0005353: fructose transmembrane transporter activity2.36E-04
13GO:0000234: phosphoethanolamine N-methyltransferase activity2.36E-04
14GO:0016868: intramolecular transferase activity, phosphotransferases2.36E-04
15GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity2.36E-04
16GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity2.36E-04
17GO:0004312: fatty acid synthase activity2.36E-04
18GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity2.36E-04
19GO:0090729: toxin activity3.92E-04
20GO:0016805: dipeptidase activity3.92E-04
21GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity3.92E-04
22GO:0004180: carboxypeptidase activity3.92E-04
23GO:0070628: proteasome binding7.50E-04
24GO:0010011: auxin binding7.50E-04
25GO:0042936: dipeptide transporter activity7.50E-04
26GO:0016846: carbon-sulfur lyase activity9.47E-04
27GO:0031593: polyubiquitin binding1.16E-03
28GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity1.16E-03
29GO:0004332: fructose-bisphosphate aldolase activity1.16E-03
30GO:0042578: phosphoric ester hydrolase activity1.16E-03
31GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.37E-03
32GO:0005515: protein binding1.47E-03
33GO:0009672: auxin:proton symporter activity2.70E-03
34GO:0008047: enzyme activator activity3.00E-03
35GO:0047372: acylglycerol lipase activity3.31E-03
36GO:0008794: arsenate reductase (glutaredoxin) activity3.31E-03
37GO:0003777: microtubule motor activity3.44E-03
38GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity3.63E-03
39GO:0031072: heat shock protein binding3.95E-03
40GO:0015035: protein disulfide oxidoreductase activity4.55E-03
41GO:0051119: sugar transmembrane transporter activity4.64E-03
42GO:0043130: ubiquitin binding5.37E-03
43GO:0003714: transcription corepressor activity5.37E-03
44GO:0015079: potassium ion transmembrane transporter activity5.75E-03
45GO:0008289: lipid binding5.96E-03
46GO:0016829: lyase activity5.97E-03
47GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity6.54E-03
48GO:0003756: protein disulfide isomerase activity7.35E-03
49GO:0003727: single-stranded RNA binding7.35E-03
50GO:0047134: protein-disulfide reductase activity7.78E-03
51GO:0004791: thioredoxin-disulfide reductase activity9.10E-03
52GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.10E-02
53GO:0051015: actin filament binding1.10E-02
54GO:0003684: damaged DNA binding1.15E-02
55GO:0005200: structural constituent of cytoskeleton1.20E-02
56GO:0015250: water channel activity1.30E-02
57GO:0005096: GTPase activator activity1.62E-02
58GO:0004871: signal transducer activity1.84E-02
59GO:0004712: protein serine/threonine/tyrosine kinase activity1.97E-02
60GO:0004185: serine-type carboxypeptidase activity2.22E-02
61GO:0051537: 2 iron, 2 sulfur cluster binding2.35E-02
62GO:0043621: protein self-association2.35E-02
63GO:0045330: aspartyl esterase activity2.95E-02
64GO:0004650: polygalacturonase activity3.31E-02
65GO:0030599: pectinesterase activity3.38E-02
66GO:0003779: actin binding3.46E-02
67GO:0051082: unfolded protein binding3.53E-02
68GO:0016758: transferase activity, transferring hexosyl groups4.06E-02
69GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.95E-02
70GO:0046910: pectinesterase inhibitor activity4.95E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0009534: chloroplast thylakoid5.44E-07
4GO:0009507: chloroplast5.85E-05
5GO:0009543: chloroplast thylakoid lumen7.11E-05
6GO:0030095: chloroplast photosystem II2.31E-04
7GO:0009535: chloroplast thylakoid membrane2.95E-04
8GO:0009570: chloroplast stroma3.05E-04
9GO:0009531: secondary cell wall5.64E-04
10GO:0032432: actin filament bundle5.64E-04
11GO:0031977: thylakoid lumen2.14E-03
12GO:0031969: chloroplast membrane2.40E-03
13GO:0045298: tubulin complex2.41E-03
14GO:0005884: actin filament3.31E-03
15GO:0016602: CCAAT-binding factor complex3.95E-03
16GO:0009941: chloroplast envelope5.07E-03
17GO:0005623: cell5.67E-03
18GO:0009705: plant-type vacuole membrane7.61E-03
19GO:0005871: kinesin complex7.78E-03
20GO:0071944: cell periphery1.10E-02
21GO:0005874: microtubule1.42E-02
22GO:0005886: plasma membrane2.45E-02
23GO:0009505: plant-type cell wall2.64E-02
24GO:0010008: endosome membrane3.17E-02
25GO:0009706: chloroplast inner membrane3.53E-02
Gene type



Gene DE type