co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G22970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010378: temperature compensation of the circadian clock	0.00E+00
2	GO:0090279: regulation of calcium ion import	0.00E+00
3	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
4	GO:0071474: cellular hyperosmotic response	0.00E+00
5	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
6	GO:0009768: photosynthesis, light harvesting in photosystem I	2.67E-25
7	GO:0018298: protein-chromophore linkage	1.18E-16
8	GO:0015979: photosynthesis	1.47E-16
9	GO:0009645: response to low light intensity stimulus	2.91E-10
10	GO:0010218: response to far red light	2.11E-08
11	GO:0009637: response to blue light	3.11E-08
12	GO:0010114: response to red light	6.30E-08
13	GO:0009644: response to high light intensity	7.83E-08
14	GO:0009769: photosynthesis, light harvesting in photosystem II	1.02E-07
15	GO:0010196: nonphotochemical quenching	1.98E-05
16	GO:0015812: gamma-aminobutyric acid transport	6.10E-05
17	GO:0009409: response to cold	9.55E-05
18	GO:0051262: protein tetramerization	1.48E-04
19	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	2.51E-04
20	GO:0006598: polyamine catabolic process	2.51E-04
21	GO:0044211: CTP salvage	3.65E-04
22	GO:0031936: negative regulation of chromatin silencing	3.65E-04
23	GO:0050482: arachidonic acid secretion	3.65E-04
24	GO:0007623: circadian rhythm	4.63E-04
25	GO:0009765: photosynthesis, light harvesting	4.88E-04
26	GO:2000306: positive regulation of photomorphogenesis	4.88E-04
27	GO:0010600: regulation of auxin biosynthetic process	4.88E-04
28	GO:0044206: UMP salvage	4.88E-04
29	GO:0030104: water homeostasis	4.88E-04
30	GO:0000003: reproduction	4.88E-04
31	GO:0009416: response to light stimulus	5.93E-04
32	GO:0048578: positive regulation of long-day photoperiodism, flowering	6.19E-04
33	GO:0043097: pyrimidine nucleoside salvage	6.19E-04
34	GO:0045962: positive regulation of development, heterochronic	7.57E-04
35	GO:0006206: pyrimidine nucleobase metabolic process	7.57E-04
36	GO:0009635: response to herbicide	7.57E-04
37	GO:0010119: regulation of stomatal movement	8.77E-04
38	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.01E-04
39	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	9.01E-04
40	GO:1900056: negative regulation of leaf senescence	1.05E-03
41	GO:0080111: DNA demethylation	1.05E-03
42	GO:0006401: RNA catabolic process	1.05E-03
43	GO:0010161: red light signaling pathway	1.05E-03
44	GO:0042542: response to hydrogen peroxide	1.17E-03
45	GO:0010928: regulation of auxin mediated signaling pathway	1.21E-03
46	GO:0042255: ribosome assembly	1.21E-03
47	GO:0010078: maintenance of root meristem identity	1.21E-03
48	GO:0009704: de-etiolation	1.21E-03
49	GO:0006644: phospholipid metabolic process	1.21E-03
50	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	1.38E-03
51	GO:0090333: regulation of stomatal closure	1.55E-03
52	GO:0009585: red, far-red light phototransduction	1.62E-03
53	GO:0010380: regulation of chlorophyll biosynthetic process	1.73E-03
54	GO:0010162: seed dormancy process	1.92E-03
55	GO:0006949: syncytium formation	1.92E-03
56	GO:0018119: peptidyl-cysteine S-nitrosylation	2.12E-03
57	GO:0046856: phosphatidylinositol dephosphorylation	2.12E-03
58	GO:0009767: photosynthetic electron transport chain	2.52E-03
59	GO:0010207: photosystem II assembly	2.74E-03
60	GO:0006636: unsaturated fatty acid biosynthetic process	3.18E-03
61	GO:0009269: response to desiccation	3.89E-03
62	GO:0003333: amino acid transmembrane transport	3.89E-03
63	GO:0048511: rhythmic process	3.89E-03
64	GO:0010017: red or far-red light signaling pathway	4.15E-03
65	GO:0009739: response to gibberellin	4.39E-03
66	GO:0071215: cellular response to abscisic acid stimulus	4.40E-03
67	GO:0045492: xylan biosynthetic process	4.65E-03
68	GO:0009737: response to abscisic acid	5.37E-03
69	GO:0008360: regulation of cell shape	5.46E-03
70	GO:0006814: sodium ion transport	5.74E-03
71	GO:0042752: regulation of circadian rhythm	5.74E-03
72	GO:0009658: chloroplast organization	6.06E-03
73	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	6.32E-03
74	GO:0000302: response to reactive oxygen species	6.32E-03
75	GO:0006970: response to osmotic stress	6.53E-03
76	GO:0032502: developmental process	6.61E-03
77	GO:0006355: regulation of transcription, DNA-templated	6.80E-03
78	GO:1901657: glycosyl compound metabolic process	6.91E-03
79	GO:0009828: plant-type cell wall loosening	7.21E-03
80	GO:0080167: response to karrikin	7.51E-03
81	GO:0016126: sterol biosynthetic process	8.16E-03
82	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	8.48E-03
83	GO:0010029: regulation of seed germination	8.48E-03
84	GO:0015995: chlorophyll biosynthetic process	9.14E-03
85	GO:0006888: ER to Golgi vesicle-mediated transport	9.14E-03
86	GO:0009910: negative regulation of flower development	1.09E-02
87	GO:0006351: transcription, DNA-templated	1.28E-02
88	GO:0051707: response to other organism	1.39E-02
89	GO:0009965: leaf morphogenesis	1.51E-02
90	GO:0009664: plant-type cell wall organization	1.63E-02
91	GO:0042538: hyperosmotic salinity response	1.63E-02
92	GO:0006364: rRNA processing	1.71E-02
93	GO:0009908: flower development	1.79E-02
94	GO:0009735: response to cytokinin	1.81E-02
95	GO:0043086: negative regulation of catalytic activity	1.93E-02
96	GO:0009740: gibberellic acid mediated signaling pathway	2.11E-02
97	GO:0009624: response to nematode	2.20E-02
98	GO:0045893: positive regulation of transcription, DNA-templated	2.27E-02
99	GO:0009058: biosynthetic process	2.68E-02
100	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.52E-02
101	GO:0010468: regulation of gene expression	3.68E-02
102	GO:0008380: RNA splicing	3.68E-02
103	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	4.20E-02
104	GO:0009826: unidimensional cell growth	4.31E-02
105	GO:0030154: cell differentiation	4.35E-02
106	GO:0007049: cell cycle	4.79E-02
107	GO:0055114: oxidation-reduction process	4.87E-02
108	GO:0009723: response to ethylene	4.91E-02
109	GO:0048366: leaf development	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0016720: delta12-fatty acid dehydrogenase activity	0.00E+00
2	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
3	GO:0004567: beta-mannosidase activity	0.00E+00
4	GO:0080082: esculin beta-glucosidase activity	0.00E+00
5	GO:0102985: Delta12-fatty-acid desaturase activity	0.00E+00
6	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
7	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
8	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
9	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
10	GO:0031409: pigment binding	3.56E-23
11	GO:0016168: chlorophyll binding	2.23E-19
12	GO:0046872: metal ion binding	5.17E-05
13	GO:0080079: cellobiose glucosidase activity	6.10E-05
14	GO:0045485: omega-6 fatty acid desaturase activity	6.10E-05
15	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	6.10E-05
16	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	6.10E-05
17	GO:0005227: calcium activated cation channel activity	6.10E-05
18	GO:0016630: protochlorophyllide reductase activity	1.48E-04
19	GO:0015180: L-alanine transmembrane transporter activity	1.48E-04
20	GO:0005515: protein binding	1.85E-04
21	GO:0046592: polyamine oxidase activity	2.51E-04
22	GO:0015181: arginine transmembrane transporter activity	3.65E-04
23	GO:0015189: L-lysine transmembrane transporter activity	3.65E-04
24	GO:0005313: L-glutamate transmembrane transporter activity	4.88E-04
25	GO:0004506: squalene monooxygenase activity	4.88E-04
26	GO:0004845: uracil phosphoribosyltransferase activity	4.88E-04
27	GO:0004623: phospholipase A2 activity	6.19E-04
28	GO:0005261: cation channel activity	9.01E-04
29	GO:0004849: uridine kinase activity	9.01E-04
30	GO:0004564: beta-fructofuranosidase activity	1.21E-03
31	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	1.38E-03
32	GO:0003843: 1,3-beta-D-glucan synthase activity	1.38E-03
33	GO:0004575: sucrose alpha-glucosidase activity	1.73E-03
34	GO:0047372: acylglycerol lipase activity	2.12E-03
35	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.32E-03
36	GO:0000175: 3'-5'-exoribonuclease activity	2.52E-03
37	GO:0005315: inorganic phosphate transmembrane transporter activity	2.52E-03
38	GO:0008131: primary amine oxidase activity	2.74E-03
39	GO:0004540: ribonuclease activity	3.89E-03
40	GO:0004707: MAP kinase activity	3.89E-03
41	GO:0003727: single-stranded RNA binding	4.65E-03
42	GO:0008514: organic anion transmembrane transporter activity	4.65E-03
43	GO:0048038: quinone binding	6.32E-03
44	GO:0102483: scopolin beta-glucosidase activity	9.14E-03
45	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.05E-02
46	GO:0003993: acid phosphatase activity	1.20E-02
47	GO:0008422: beta-glucosidase activity	1.23E-02
48	GO:0042393: histone binding	1.27E-02
49	GO:0005198: structural molecule activity	1.51E-02
50	GO:0015293: symporter activity	1.51E-02
51	GO:0015171: amino acid transmembrane transporter activity	1.84E-02
52	GO:0019843: rRNA binding	2.58E-02
53	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.63E-02
54	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.84E-02
55	GO:0015144: carbohydrate transmembrane transporter activity	2.94E-02
56	GO:0046910: pectinesterase inhibitor activity	3.09E-02
57	GO:0015297: antiporter activity	3.14E-02
58	GO:0005351: sugar:proton symporter activity	3.20E-02
59	GO:0005509: calcium ion binding	3.69E-02
60	GO:0003677: DNA binding	3.97E-02
61	GO:0008168: methyltransferase activity	4.31E-02
62	GO:0003682: chromatin binding	4.61E-02
63	GO:0050660: flavin adenine dinucleotide binding	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0009522: photosystem I	8.34E-21
3	GO:0030076: light-harvesting complex	4.13E-18
4	GO:0009579: thylakoid	4.49E-17
5	GO:0009534: chloroplast thylakoid	4.82E-17
6	GO:0010287: plastoglobule	9.25E-16
7	GO:0009535: chloroplast thylakoid membrane	1.71E-14
8	GO:0009941: chloroplast envelope	7.24E-10
9	GO:0009523: photosystem II	2.15E-09
10	GO:0042651: thylakoid membrane	3.73E-06
11	GO:0009517: PSII associated light-harvesting complex II	3.86E-06
12	GO:0009507: chloroplast	1.23E-04
13	GO:0016021: integral component of membrane	3.51E-04
14	GO:0000932: P-body	5.92E-04
15	GO:0000178: exosome (RNase complex)	6.19E-04
16	GO:0016020: membrane	6.82E-04
17	GO:0030127: COPII vesicle coat	7.57E-04
18	GO:0009533: chloroplast stromal thylakoid	1.05E-03
19	GO:0009538: photosystem I reaction center	1.21E-03
20	GO:0000148: 1,3-beta-D-glucan synthase complex	1.38E-03
21	GO:0031966: mitochondrial membrane	1.52E-03
22	GO:0031090: organelle membrane	1.55E-03
23	GO:0010494: cytoplasmic stress granule	1.55E-03
24	GO:0030095: chloroplast photosystem II	2.74E-03
25	GO:0009654: photosystem II oxygen evolving complex	3.65E-03
26	GO:0031410: cytoplasmic vesicle	4.15E-03
27	GO:0019898: extrinsic component of membrane	6.03E-03
28	GO:0009707: chloroplast outer membrane	9.82E-03
29	GO:0031977: thylakoid lumen	1.31E-02
30	GO:0005654: nucleoplasm	2.53E-02
31	GO:0009543: chloroplast thylakoid lumen	2.58E-02
32	GO:0031225: anchored component of membrane	3.09E-02
33	GO:0046658: anchored component of plasma membrane	3.97E-02
34	GO:0009505: plant-type cell wall	4.99E-02