co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G22780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0010067: procambium histogenesis	4.39E-05
4	GO:0045454: cell redox homeostasis	1.09E-04
5	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.22E-04
6	GO:0006434: seryl-tRNA aminoacylation	1.22E-04
7	GO:0060627: regulation of vesicle-mediated transport	1.22E-04
8	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	1.22E-04
9	GO:0010442: guard cell morphogenesis	1.22E-04
10	GO:1901599: (-)-pinoresinol biosynthetic process	1.22E-04
11	GO:0043039: tRNA aminoacylation	2.82E-04
12	GO:0052541: plant-type cell wall cellulose metabolic process	2.82E-04
13	GO:0044208: 'de novo' AMP biosynthetic process	2.82E-04
14	GO:0010223: secondary shoot formation	3.00E-04
15	GO:0042742: defense response to bacterium	3.97E-04
16	GO:0006065: UDP-glucuronate biosynthetic process	4.65E-04
17	GO:0090506: axillary shoot meristem initiation	4.65E-04
18	GO:0001944: vasculature development	6.02E-04
19	GO:0010089: xylem development	6.53E-04
20	GO:0007231: osmosensory signaling pathway	6.66E-04
21	GO:0043572: plastid fission	6.66E-04
22	GO:0000413: protein peptidyl-prolyl isomerization	7.61E-04
23	GO:0006869: lipid transport	8.50E-04
24	GO:0015976: carbon utilization	8.84E-04
25	GO:0009765: photosynthesis, light harvesting	8.84E-04
26	GO:0000919: cell plate assembly	8.84E-04
27	GO:2000122: negative regulation of stomatal complex development	8.84E-04
28	GO:0033500: carbohydrate homeostasis	8.84E-04
29	GO:0010037: response to carbon dioxide	8.84E-04
30	GO:0009956: radial pattern formation	8.84E-04
31	GO:0016123: xanthophyll biosynthetic process	1.12E-03
32	GO:0048359: mucilage metabolic process involved in seed coat development	1.12E-03
33	GO:0016120: carotene biosynthetic process	1.12E-03
34	GO:0010236: plastoquinone biosynthetic process	1.12E-03
35	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.37E-03
36	GO:0010555: response to mannitol	1.64E-03
37	GO:0009955: adaxial/abaxial pattern specification	1.64E-03
38	GO:1901259: chloroplast rRNA processing	1.64E-03
39	GO:0006694: steroid biosynthetic process	1.64E-03
40	GO:0010189: vitamin E biosynthetic process	1.64E-03
41	GO:0071555: cell wall organization	1.70E-03
42	GO:0071669: plant-type cell wall organization or biogenesis	1.92E-03
43	GO:0050790: regulation of catalytic activity	1.92E-03
44	GO:0009834: plant-type secondary cell wall biogenesis	2.03E-03
45	GO:0009642: response to light intensity	2.22E-03
46	GO:0030091: protein repair	2.22E-03
47	GO:0000028: ribosomal small subunit assembly	2.22E-03
48	GO:0009658: chloroplast organization	2.53E-03
49	GO:0009808: lignin metabolic process	2.54E-03
50	GO:0032544: plastid translation	2.54E-03
51	GO:0055114: oxidation-reduction process	2.55E-03
52	GO:0042254: ribosome biogenesis	2.59E-03
53	GO:0015780: nucleotide-sugar transport	2.87E-03
54	GO:0010206: photosystem II repair	2.87E-03
55	GO:0006189: 'de novo' IMP biosynthetic process	2.87E-03
56	GO:0051707: response to other organism	2.99E-03
57	GO:0006412: translation	3.43E-03
58	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.47E-03
59	GO:0006949: syncytium formation	3.57E-03
60	GO:0015979: photosynthesis	3.93E-03
61	GO:0010015: root morphogenesis	3.94E-03
62	GO:0006816: calcium ion transport	3.94E-03
63	GO:0009807: lignan biosynthetic process	3.94E-03
64	GO:0043085: positive regulation of catalytic activity	3.94E-03
65	GO:0018119: peptidyl-cysteine S-nitrosylation	3.94E-03
66	GO:0006820: anion transport	4.32E-03
67	GO:0050826: response to freezing	4.71E-03
68	GO:0010020: chloroplast fission	5.12E-03
69	GO:0009933: meristem structural organization	5.12E-03
70	GO:0070588: calcium ion transmembrane transport	5.54E-03
71	GO:0006071: glycerol metabolic process	5.98E-03
72	GO:0019762: glucosinolate catabolic process	5.98E-03
73	GO:0019344: cysteine biosynthetic process	6.42E-03
74	GO:0010026: trichome differentiation	6.87E-03
75	GO:0009768: photosynthesis, light harvesting in photosystem I	6.87E-03
76	GO:0019748: secondary metabolic process	7.81E-03
77	GO:0007005: mitochondrion organization	7.81E-03
78	GO:0080092: regulation of pollen tube growth	7.81E-03
79	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.30E-03
80	GO:0009294: DNA mediated transformation	8.30E-03
81	GO:0019722: calcium-mediated signaling	8.80E-03
82	GO:0016117: carotenoid biosynthetic process	9.31E-03
83	GO:0042335: cuticle development	9.83E-03
84	GO:0000271: polysaccharide biosynthetic process	9.83E-03
85	GO:0010087: phloem or xylem histogenesis	9.83E-03
86	GO:0045490: pectin catabolic process	9.86E-03
87	GO:0009735: response to cytokinin	1.01E-02
88	GO:0010305: leaf vascular tissue pattern formation	1.04E-02
89	GO:0006662: glycerol ether metabolic process	1.04E-02
90	GO:0009409: response to cold	1.11E-02
91	GO:0009416: response to light stimulus	1.13E-02
92	GO:0016132: brassinosteroid biosynthetic process	1.20E-02
93	GO:0071554: cell wall organization or biogenesis	1.20E-02
94	GO:0002229: defense response to oomycetes	1.20E-02
95	GO:0007264: small GTPase mediated signal transduction	1.26E-02
96	GO:0010583: response to cyclopentenone	1.26E-02
97	GO:0009828: plant-type cell wall loosening	1.38E-02
98	GO:0007267: cell-cell signaling	1.44E-02
99	GO:0009826: unidimensional cell growth	1.47E-02
100	GO:0010027: thylakoid membrane organization	1.56E-02
101	GO:0015995: chlorophyll biosynthetic process	1.75E-02
102	GO:0009817: defense response to fungus, incompatible interaction	1.88E-02
103	GO:0048481: plant ovule development	1.88E-02
104	GO:0030244: cellulose biosynthetic process	1.88E-02
105	GO:0018298: protein-chromophore linkage	1.88E-02
106	GO:0009813: flavonoid biosynthetic process	1.95E-02
107	GO:0009832: plant-type cell wall biogenesis	1.95E-02
108	GO:0010218: response to far red light	2.02E-02
109	GO:0007568: aging	2.09E-02
110	GO:0010119: regulation of stomatal movement	2.09E-02
111	GO:0009637: response to blue light	2.23E-02
112	GO:0034599: cellular response to oxidative stress	2.30E-02
113	GO:0006631: fatty acid metabolic process	2.52E-02
114	GO:0010114: response to red light	2.67E-02
115	GO:0042546: cell wall biogenesis	2.75E-02
116	GO:0008643: carbohydrate transport	2.82E-02
117	GO:0042538: hyperosmotic salinity response	3.14E-02
118	GO:0009664: plant-type cell wall organization	3.14E-02
119	GO:0009809: lignin biosynthetic process	3.30E-02
120	GO:0006364: rRNA processing	3.30E-02
121	GO:0006813: potassium ion transport	3.30E-02
122	GO:0006508: proteolysis	3.74E-02
123	GO:0048367: shoot system development	3.80E-02

Rank	GO Term	Adjusted P value
1	GO:0050614: delta24-sterol reductase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
7	GO:0051920: peroxiredoxin activity	1.24E-09
8	GO:0016209: antioxidant activity	4.47E-09
9	GO:0019843: rRNA binding	7.56E-06
10	GO:0051753: mannan synthase activity	4.39E-05
11	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.22E-04
12	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.22E-04
13	GO:0070626: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity	1.22E-04
14	GO:0004560: alpha-L-fucosidase activity	1.22E-04
15	GO:0004828: serine-tRNA ligase activity	1.22E-04
16	GO:0004018: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	1.22E-04
17	GO:0042349: guiding stereospecific synthesis activity	1.22E-04
18	GO:0008289: lipid binding	3.17E-04
19	GO:0004601: peroxidase activity	4.04E-04
20	GO:0003735: structural constituent of ribosome	4.15E-04
21	GO:0003979: UDP-glucose 6-dehydrogenase activity	4.65E-04
22	GO:0005504: fatty acid binding	4.65E-04
23	GO:0030267: glyoxylate reductase (NADP) activity	4.65E-04
24	GO:0030570: pectate lyase activity	6.02E-04
25	GO:0045430: chalcone isomerase activity	8.84E-04
26	GO:0046527: glucosyltransferase activity	8.84E-04
27	GO:0008381: mechanically-gated ion channel activity	1.12E-03
28	GO:0016759: cellulose synthase activity	1.20E-03
29	GO:0008200: ion channel inhibitor activity	1.37E-03
30	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.64E-03
31	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.64E-03
32	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.64E-03
33	GO:0052747: sinapyl alcohol dehydrogenase activity	2.22E-03
34	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.87E-03
35	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.48E-03
36	GO:0030234: enzyme regulator activity	3.57E-03
37	GO:0008047: enzyme activator activity	3.57E-03
38	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.94E-03
39	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.32E-03
40	GO:0005262: calcium channel activity	4.71E-03
41	GO:0004565: beta-galactosidase activity	4.71E-03
42	GO:0004089: carbonate dehydratase activity	4.71E-03
43	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.90E-03
44	GO:0003924: GTPase activity	5.44E-03
45	GO:0031409: pigment binding	5.98E-03
46	GO:0008324: cation transmembrane transporter activity	6.87E-03
47	GO:0004176: ATP-dependent peptidase activity	7.34E-03
48	GO:0033612: receptor serine/threonine kinase binding	7.34E-03
49	GO:0016760: cellulose synthase (UDP-forming) activity	8.30E-03
50	GO:0008514: organic anion transmembrane transporter activity	8.80E-03
51	GO:0005102: receptor binding	9.31E-03
52	GO:0047134: protein-disulfide reductase activity	9.31E-03
53	GO:0001085: RNA polymerase II transcription factor binding	1.04E-02
54	GO:0005199: structural constituent of cell wall	1.04E-02
55	GO:0004791: thioredoxin-disulfide reductase activity	1.09E-02
56	GO:0004672: protein kinase activity	1.25E-02
57	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.32E-02
58	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.44E-02
59	GO:0008237: metallopeptidase activity	1.44E-02
60	GO:0016413: O-acetyltransferase activity	1.50E-02
61	GO:0016168: chlorophyll binding	1.62E-02
62	GO:0030247: polysaccharide binding	1.75E-02
63	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.82E-02
64	GO:0008236: serine-type peptidase activity	1.82E-02
65	GO:0005516: calmodulin binding	1.89E-02
66	GO:0004222: metalloendopeptidase activity	2.02E-02
67	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.09E-02
68	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.09E-02
69	GO:0005525: GTP binding	2.12E-02
70	GO:0003746: translation elongation factor activity	2.23E-02
71	GO:0004185: serine-type carboxypeptidase activity	2.67E-02
72	GO:0051287: NAD binding	3.06E-02
73	GO:0004650: polygalacturonase activity	3.98E-02
74	GO:0030599: pectinesterase activity	4.06E-02
75	GO:0003779: actin binding	4.15E-02
76	GO:0015035: protein disulfide oxidoreductase activity	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0048046: apoplast	4.46E-11
2	GO:0009570: chloroplast stroma	3.17E-10
3	GO:0009941: chloroplast envelope	2.82E-09
4	GO:0009507: chloroplast	2.95E-08
5	GO:0009579: thylakoid	1.42E-06
6	GO:0009505: plant-type cell wall	2.42E-06
7	GO:0000311: plastid large ribosomal subunit	5.42E-06
8	GO:0046658: anchored component of plasma membrane	3.24E-05
9	GO:0031225: anchored component of membrane	3.49E-05
10	GO:0010319: stromule	9.50E-05
11	GO:0009543: chloroplast thylakoid lumen	1.13E-04
12	GO:0009547: plastid ribosome	1.22E-04
13	GO:0031977: thylakoid lumen	2.90E-04
14	GO:0009535: chloroplast thylakoid membrane	5.42E-04
15	GO:0009534: chloroplast thylakoid	6.92E-04
16	GO:0009706: chloroplast inner membrane	7.42E-04
17	GO:0005576: extracellular region	7.88E-04
18	GO:0000793: condensed chromosome	1.37E-03
19	GO:0005840: ribosome	1.85E-03
20	GO:0009533: chloroplast stromal thylakoid	1.92E-03
21	GO:0000794: condensed nuclear chromosome	1.92E-03
22	GO:0009536: plastid	2.43E-03
23	GO:0005763: mitochondrial small ribosomal subunit	2.87E-03
24	GO:0000139: Golgi membrane	2.89E-03
25	GO:0016324: apical plasma membrane	3.57E-03
26	GO:0030095: chloroplast photosystem II	5.12E-03
27	GO:0000312: plastid small ribosomal subunit	5.12E-03
28	GO:0030076: light-harvesting complex	5.54E-03
29	GO:0005875: microtubule associated complex	5.98E-03
30	GO:0010287: plastoglobule	6.76E-03
31	GO:0009654: photosystem II oxygen evolving complex	6.87E-03
32	GO:0005886: plasma membrane	6.97E-03
33	GO:0009522: photosystem I	1.09E-02
34	GO:0019898: extrinsic component of membrane	1.15E-02
35	GO:0016021: integral component of membrane	1.50E-02
36	GO:0005667: transcription factor complex	1.69E-02
37	GO:0005618: cell wall	1.87E-02
38	GO:0005794: Golgi apparatus	1.98E-02
39	GO:0015934: large ribosomal subunit	2.09E-02
40	GO:0005774: vacuolar membrane	4.44E-02
41	GO:0022626: cytosolic ribosome	4.74E-02