co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G21055

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0090391: granum assembly	4.23E-09
4	GO:0015979: photosynthesis	6.47E-08
5	GO:0015995: chlorophyll biosynthetic process	2.65E-07
6	GO:0009735: response to cytokinin	1.32E-05
7	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.89E-05
8	GO:1901259: chloroplast rRNA processing	5.62E-05
9	GO:0009772: photosynthetic electron transport in photosystem II	7.52E-05
10	GO:0010196: nonphotochemical quenching	7.52E-05
11	GO:0009828: plant-type cell wall loosening	1.18E-04
12	GO:0032544: plastid translation	1.22E-04
13	GO:0034337: RNA folding	1.42E-04
14	GO:0010206: photosystem II repair	1.50E-04
15	GO:0010027: thylakoid membrane organization	1.52E-04
16	GO:0010205: photoinhibition	1.80E-04
17	GO:0009773: photosynthetic electron transport in photosystem I	2.49E-04
18	GO:0045490: pectin catabolic process	2.82E-04
19	GO:0016024: CDP-diacylglycerol biosynthetic process	2.87E-04
20	GO:0035304: regulation of protein dephosphorylation	3.25E-04
21	GO:0043255: regulation of carbohydrate biosynthetic process	3.25E-04
22	GO:0001736: establishment of planar polarity	3.25E-04
23	GO:0010207: photosystem II assembly	3.70E-04
24	GO:0009664: plant-type cell wall organization	5.67E-04
25	GO:0016998: cell wall macromolecule catabolic process	6.19E-04
26	GO:0009650: UV protection	7.63E-04
27	GO:1901332: negative regulation of lateral root development	7.63E-04
28	GO:0051513: regulation of monopolar cell growth	7.63E-04
29	GO:0071484: cellular response to light intensity	7.63E-04
30	GO:0010239: chloroplast mRNA processing	7.63E-04
31	GO:0042335: cuticle development	9.27E-04
32	GO:0009624: response to nematode	9.61E-04
33	GO:0009958: positive gravitropism	9.96E-04
34	GO:0045727: positive regulation of translation	1.01E-03
35	GO:0022622: root system development	1.01E-03
36	GO:0010438: cellular response to sulfur starvation	1.28E-03
37	GO:0009913: epidermal cell differentiation	1.57E-03
38	GO:0006655: phosphatidylglycerol biosynthetic process	1.57E-03
39	GO:0010337: regulation of salicylic acid metabolic process	1.57E-03
40	GO:0009759: indole glucosinolate biosynthetic process	1.57E-03
41	GO:0042549: photosystem II stabilization	1.57E-03
42	GO:0009959: negative gravitropism	1.57E-03
43	GO:0009627: systemic acquired resistance	1.95E-03
44	GO:0032880: regulation of protein localization	2.21E-03
45	GO:0007166: cell surface receptor signaling pathway	2.25E-03
46	GO:0010311: lateral root formation	2.38E-03
47	GO:0006605: protein targeting	2.56E-03
48	GO:0010492: maintenance of shoot apical meristem identity	2.56E-03
49	GO:0006353: DNA-templated transcription, termination	2.56E-03
50	GO:0022900: electron transport chain	2.93E-03
51	GO:0009826: unidimensional cell growth	3.15E-03
52	GO:0009245: lipid A biosynthetic process	3.31E-03
53	GO:0048507: meristem development	3.31E-03
54	GO:0006779: porphyrin-containing compound biosynthetic process	3.71E-03
55	GO:0006032: chitin catabolic process	4.12E-03
56	GO:0048829: root cap development	4.12E-03
57	GO:0006949: syncytium formation	4.12E-03
58	GO:0006782: protoporphyrinogen IX biosynthetic process	4.12E-03
59	GO:0019684: photosynthesis, light reaction	4.55E-03
60	GO:0018119: peptidyl-cysteine S-nitrosylation	4.55E-03
61	GO:0048765: root hair cell differentiation	4.55E-03
62	GO:0002213: defense response to insect	4.99E-03
63	GO:2000012: regulation of auxin polar transport	5.45E-03
64	GO:0010143: cutin biosynthetic process	5.92E-03
65	GO:0010053: root epidermal cell differentiation	6.41E-03
66	GO:0009825: multidimensional cell growth	6.41E-03
67	GO:0010167: response to nitrate	6.41E-03
68	GO:0016042: lipid catabolic process	6.86E-03
69	GO:0006636: unsaturated fatty acid biosynthetic process	6.91E-03
70	GO:0006833: water transport	6.91E-03
71	GO:0000162: tryptophan biosynthetic process	6.91E-03
72	GO:0051017: actin filament bundle assembly	7.42E-03
73	GO:0009742: brassinosteroid mediated signaling pathway	7.46E-03
74	GO:0019953: sexual reproduction	7.95E-03
75	GO:0007017: microtubule-based process	7.95E-03
76	GO:0003333: amino acid transmembrane transport	8.49E-03
77	GO:0030245: cellulose catabolic process	9.05E-03
78	GO:0009411: response to UV	9.62E-03
79	GO:0042744: hydrogen peroxide catabolic process	1.00E-02
80	GO:0009306: protein secretion	1.02E-02
81	GO:0008284: positive regulation of cell proliferation	1.08E-02
82	GO:0006633: fatty acid biosynthetic process	1.11E-02
83	GO:0080022: primary root development	1.14E-02
84	GO:0034220: ion transmembrane transport	1.14E-02
85	GO:0015986: ATP synthesis coupled proton transport	1.26E-02
86	GO:0048825: cotyledon development	1.33E-02
87	GO:0009739: response to gibberellin	1.36E-02
88	GO:0000302: response to reactive oxygen species	1.39E-02
89	GO:0016032: viral process	1.46E-02
90	GO:0009639: response to red or far red light	1.60E-02
91	GO:0051607: defense response to virus	1.74E-02
92	GO:0045893: positive regulation of transcription, DNA-templated	1.76E-02
93	GO:0010411: xyloglucan metabolic process	2.03E-02
94	GO:0030244: cellulose biosynthetic process	2.19E-02
95	GO:0080167: response to karrikin	2.35E-02
96	GO:0048527: lateral root development	2.42E-02
97	GO:0007568: aging	2.42E-02
98	GO:0006865: amino acid transport	2.51E-02
99	GO:0034599: cellular response to oxidative stress	2.67E-02
100	GO:0010114: response to red light	3.10E-02
101	GO:0009926: auxin polar transport	3.10E-02
102	GO:0042546: cell wall biogenesis	3.19E-02
103	GO:0032259: methylation	3.31E-02
104	GO:0006855: drug transmembrane transport	3.46E-02
105	GO:0009809: lignin biosynthetic process	3.83E-02
106	GO:0006364: rRNA processing	3.83E-02
107	GO:0051603: proteolysis involved in cellular protein catabolic process	3.93E-02
108	GO:0006412: translation	4.20E-02
109	GO:0009740: gibberellic acid mediated signaling pathway	4.72E-02
110	GO:0042545: cell wall modification	4.82E-02
111	GO:0009734: auxin-activated signaling pathway	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0016851: magnesium chelatase activity	2.07E-08
4	GO:0030570: pectate lyase activity	3.89E-05
5	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.99E-05
6	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.42E-04
7	GO:0010242: oxygen evolving activity	1.42E-04
8	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.42E-04
9	GO:0045485: omega-6 fatty acid desaturase activity	1.42E-04
10	GO:0019843: rRNA binding	1.64E-04
11	GO:0008266: poly(U) RNA binding	3.70E-04
12	GO:0005528: FK506 binding	5.13E-04
13	GO:0052689: carboxylic ester hydrolase activity	9.00E-04
14	GO:0010011: auxin binding	1.01E-03
15	GO:0010328: auxin influx transmembrane transporter activity	1.01E-03
16	GO:0016829: lyase activity	1.40E-03
17	GO:0031177: phosphopantetheine binding	1.57E-03
18	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.57E-03
19	GO:0004130: cytochrome-c peroxidase activity	1.57E-03
20	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.74E-03
21	GO:0000035: acyl binding	1.88E-03
22	GO:0016832: aldehyde-lyase activity	1.88E-03
23	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.56E-03
24	GO:0004568: chitinase activity	4.12E-03
25	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.29E-03
26	GO:0031072: heat shock protein binding	5.45E-03
27	GO:0008083: growth factor activity	5.92E-03
28	GO:0016746: transferase activity, transferring acyl groups	7.24E-03
29	GO:0003735: structural constituent of ribosome	8.22E-03
30	GO:0004176: ATP-dependent peptidase activity	8.49E-03
31	GO:0008810: cellulase activity	9.62E-03
32	GO:0003756: protein disulfide isomerase activity	1.02E-02
33	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.20E-02
34	GO:0008080: N-acetyltransferase activity	1.20E-02
35	GO:0050662: coenzyme binding	1.26E-02
36	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.39E-02
37	GO:0004518: nuclease activity	1.46E-02
38	GO:0051015: actin filament binding	1.53E-02
39	GO:0016791: phosphatase activity	1.60E-02
40	GO:0005200: structural constituent of cytoskeleton	1.67E-02
41	GO:0008483: transaminase activity	1.67E-02
42	GO:0003729: mRNA binding	1.76E-02
43	GO:0015250: water channel activity	1.81E-02
44	GO:0016168: chlorophyll binding	1.88E-02
45	GO:0004601: peroxidase activity	1.89E-02
46	GO:0016788: hydrolase activity, acting on ester bonds	1.93E-02
47	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.03E-02
48	GO:0030247: polysaccharide binding	2.03E-02
49	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.19E-02
50	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.42E-02
51	GO:0003746: translation elongation factor activity	2.59E-02
52	GO:0004185: serine-type carboxypeptidase activity	3.10E-02
53	GO:0005509: calcium ion binding	3.23E-02
54	GO:0051537: 2 iron, 2 sulfur cluster binding	3.28E-02
55	GO:0043621: protein self-association	3.28E-02
56	GO:0015293: symporter activity	3.37E-02
57	GO:0016298: lipase activity	3.93E-02
58	GO:0015171: amino acid transmembrane transporter activity	4.12E-02
59	GO:0045330: aspartyl esterase activity	4.12E-02
60	GO:0016874: ligase activity	4.72E-02
61	GO:0030599: pectinesterase activity	4.72E-02
62	GO:0008289: lipid binding	4.79E-02
63	GO:0051082: unfolded protein binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009534: chloroplast thylakoid	3.95E-22
4	GO:0009570: chloroplast stroma	1.12E-16
5	GO:0009507: chloroplast	1.21E-16
6	GO:0009579: thylakoid	6.92E-15
7	GO:0009535: chloroplast thylakoid membrane	3.22E-14
8	GO:0009941: chloroplast envelope	1.24E-12
9	GO:0009543: chloroplast thylakoid lumen	7.14E-10
10	GO:0010007: magnesium chelatase complex	4.23E-09
11	GO:0031977: thylakoid lumen	2.92E-08
12	GO:0005618: cell wall	2.16E-06
13	GO:0030095: chloroplast photosystem II	1.21E-05
14	GO:0009654: photosystem II oxygen evolving complex	2.49E-05
15	GO:0005576: extracellular region	4.33E-05
16	GO:0019898: extrinsic component of membrane	7.99E-05
17	GO:0009295: nucleoid	1.29E-04
18	GO:0030093: chloroplast photosystem I	3.25E-04
19	GO:0009508: plastid chromosome	3.27E-04
20	GO:0005840: ribosome	6.73E-04
21	GO:0015630: microtubule cytoskeleton	7.63E-04
22	GO:0009522: photosystem I	1.07E-03
23	GO:0010287: plastoglobule	1.19E-03
24	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.57E-03
25	GO:0009986: cell surface	2.21E-03
26	GO:0042644: chloroplast nucleoid	3.31E-03
27	GO:0009505: plant-type cell wall	3.67E-03
28	GO:0032040: small-subunit processome	4.99E-03
29	GO:0005578: proteinaceous extracellular matrix	5.45E-03
30	GO:0016020: membrane	6.04E-03
31	GO:0009706: chloroplast inner membrane	7.04E-03
32	GO:0015629: actin cytoskeleton	9.62E-03
33	GO:0010319: stromule	1.67E-02
34	GO:0048046: apoplast	2.31E-02
35	GO:0005856: cytoskeleton	3.37E-02