Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G20240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
2GO:0010378: temperature compensation of the circadian clock0.00E+00
3GO:0009768: photosynthesis, light harvesting in photosystem I7.29E-24
4GO:0018298: protein-chromophore linkage1.59E-15
5GO:0015979: photosynthesis1.25E-12
6GO:0009645: response to low light intensity stimulus8.38E-11
7GO:0010218: response to far red light4.76E-09
8GO:0009644: response to high light intensity1.79E-08
9GO:0009769: photosynthesis, light harvesting in photosystem II3.85E-08
10GO:0010114: response to red light9.47E-07
11GO:0009409: response to cold2.36E-05
12GO:0009637: response to blue light2.65E-05
13GO:0000025: maltose catabolic process4.04E-05
14GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.04E-05
15GO:0005983: starch catabolic process4.67E-05
16GO:0051170: nuclear import1.00E-04
17GO:0042780: tRNA 3'-end processing1.73E-04
18GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.73E-04
19GO:0042256: mature ribosome assembly1.73E-04
20GO:0006598: polyamine catabolic process1.73E-04
21GO:0000381: regulation of alternative mRNA splicing, via spliceosome3.43E-04
22GO:0030104: water homeostasis3.43E-04
23GO:0015743: malate transport3.43E-04
24GO:0009765: photosynthesis, light harvesting3.43E-04
25GO:0010600: regulation of auxin biosynthetic process3.43E-04
26GO:0000380: alternative mRNA splicing, via spliceosome4.37E-04
27GO:0048578: positive regulation of long-day photoperiodism, flowering4.37E-04
28GO:0080167: response to karrikin5.36E-04
29GO:0045040: protein import into mitochondrial outer membrane5.37E-04
30GO:0033365: protein localization to organelle5.37E-04
31GO:0009635: response to herbicide5.37E-04
32GO:0010244: response to low fluence blue light stimulus by blue low-fluence system6.40E-04
33GO:0010161: red light signaling pathway7.49E-04
34GO:0010196: nonphotochemical quenching7.49E-04
35GO:0009704: de-etiolation8.61E-04
36GO:0010928: regulation of auxin mediated signaling pathway8.61E-04
37GO:0009585: red, far-red light phototransduction9.76E-04
38GO:0001510: RNA methylation9.77E-04
39GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay1.10E-03
40GO:0090333: regulation of stomatal closure1.10E-03
41GO:0000387: spliceosomal snRNP assembly1.22E-03
42GO:0018119: peptidyl-cysteine S-nitrosylation1.49E-03
43GO:0009735: response to cytokinin1.58E-03
44GO:0010628: positive regulation of gene expression1.77E-03
45GO:0006626: protein targeting to mitochondrion1.77E-03
46GO:0006006: glucose metabolic process1.77E-03
47GO:0009767: photosynthetic electron transport chain1.77E-03
48GO:0009416: response to light stimulus1.77E-03
49GO:0007623: circadian rhythm2.32E-03
50GO:0048511: rhythmic process2.72E-03
51GO:0009269: response to desiccation2.72E-03
52GO:0010017: red or far-red light signaling pathway2.89E-03
53GO:0071215: cellular response to abscisic acid stimulus3.06E-03
54GO:0070417: cellular response to cold3.42E-03
55GO:0042752: regulation of circadian rhythm3.99E-03
56GO:0010200: response to chitin4.57E-03
57GO:0010286: heat acclimation5.21E-03
58GO:0009788: negative regulation of abscisic acid-activated signaling pathway5.86E-03
59GO:0006888: ER to Golgi vesicle-mediated transport6.31E-03
60GO:0000160: phosphorelay signal transduction system7.01E-03
61GO:0010119: regulation of stomatal movement7.49E-03
62GO:0042542: response to hydrogen peroxide9.27E-03
63GO:0009640: photomorphogenesis9.53E-03
64GO:0008643: carbohydrate transport1.01E-02
65GO:0006812: cation transport1.12E-02
66GO:0042538: hyperosmotic salinity response1.12E-02
67GO:0045893: positive regulation of transcription, DNA-templated1.33E-02
68GO:0006633: fatty acid biosynthetic process2.08E-02
69GO:0006355: regulation of transcription, DNA-templated2.16E-02
70GO:0009414: response to water deprivation2.29E-02
71GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.41E-02
72GO:0045892: negative regulation of transcription, DNA-templated4.07E-02
73GO:0006886: intracellular protein transport4.11E-02
74GO:0032259: methylation4.53E-02
RankGO TermAdjusted P value
1GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
2GO:0031409: pigment binding1.28E-21
3GO:0016168: chlorophyll binding2.95E-18
4GO:0004134: 4-alpha-glucanotransferase activity4.04E-05
5GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters1.00E-04
6GO:0046592: polyamine oxidase activity1.73E-04
7GO:0042781: 3'-tRNA processing endoribonuclease activity1.73E-04
8GO:0005253: anion channel activity3.43E-04
9GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.37E-04
10GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.58E-04
11GO:0004556: alpha-amylase activity5.37E-04
12GO:0015562: efflux transmembrane transporter activity5.37E-04
13GO:0015140: malate transmembrane transporter activity7.49E-04
14GO:0004430: 1-phosphatidylinositol 4-kinase activity9.77E-04
15GO:0046872: metal ion binding1.03E-03
16GO:0004565: beta-galactosidase activity1.77E-03
17GO:0015266: protein channel activity1.77E-03
18GO:0008131: primary amine oxidase activity1.92E-03
19GO:0008324: cation transmembrane transporter activity2.55E-03
20GO:0008168: methyltransferase activity3.44E-03
21GO:0000156: phosphorelay response regulator activity4.79E-03
22GO:0005515: protein binding7.23E-03
23GO:0005198: structural molecule activity1.03E-02
24GO:0022857: transmembrane transporter activity1.45E-02
25GO:0015297: antiporter activity2.15E-02
26GO:0005509: calcium ion binding2.16E-02
27GO:0061630: ubiquitin protein ligase activity3.67E-02
RankGO TermAdjusted P value
1GO:0009522: photosystem I1.57E-19
2GO:0030076: light-harvesting complex1.89E-16
3GO:0010287: plastoglobule5.34E-15
4GO:0009579: thylakoid9.16E-14
5GO:0009534: chloroplast thylakoid3.81E-12
6GO:0009535: chloroplast thylakoid membrane1.23E-10
7GO:0009523: photosystem II4.80E-10
8GO:0009941: chloroplast envelope5.93E-09
9GO:0009507: chloroplast2.43E-05
10GO:0009783: photosystem II antenna complex4.04E-05
11GO:0016021: integral component of membrane6.44E-05
12GO:0035145: exon-exon junction complex1.00E-04
13GO:0042651: thylakoid membrane1.02E-04
14GO:0005744: mitochondrial inner membrane presequence translocase complex1.51E-04
15GO:0009517: PSII associated light-harvesting complex II3.43E-04
16GO:0030127: COPII vesicle coat5.37E-04
17GO:0009501: amyloplast8.61E-04
18GO:0016020: membrane9.55E-04
19GO:0005742: mitochondrial outer membrane translocase complex9.77E-04
20GO:0016604: nuclear body1.22E-03
21GO:0005654: nucleoplasm1.65E-03
22GO:0030095: chloroplast photosystem II1.92E-03
23GO:0009654: photosystem II oxygen evolving complex2.55E-03
24GO:0005741: mitochondrial outer membrane2.72E-03
25GO:0019898: extrinsic component of membrane4.19E-03
26GO:0005743: mitochondrial inner membrane6.05E-03
27GO:0031977: thylakoid lumen9.01E-03
28GO:0009570: chloroplast stroma1.30E-02
29GO:0009543: chloroplast thylakoid lumen1.77E-02
30GO:0005623: cell1.80E-02
31GO:0005622: intracellular2.06E-02
32GO:0009705: plant-type vacuole membrane2.22E-02
33GO:0046658: anchored component of plasma membrane2.72E-02
34GO:0009505: plant-type cell wall2.94E-02
Gene type



Gene DE type