GO Enrichment Analysis of Co-expressed Genes with
AT3G20000
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0071433: cell wall repair | 0.00E+00 |
| 4 | GO:0006412: translation | 3.24E-35 |
| 5 | GO:0042254: ribosome biogenesis | 1.30E-16 |
| 6 | GO:0000027: ribosomal large subunit assembly | 2.26E-09 |
| 7 | GO:0046686: response to cadmium ion | 4.08E-09 |
| 8 | GO:0006457: protein folding | 1.32E-07 |
| 9 | GO:0006458: 'de novo' protein folding | 3.19E-07 |
| 10 | GO:0061077: chaperone-mediated protein folding | 3.51E-07 |
| 11 | GO:0007005: mitochondrion organization | 4.35E-07 |
| 12 | GO:0045041: protein import into mitochondrial intermembrane space | 7.28E-07 |
| 13 | GO:0002181: cytoplasmic translation | 2.75E-06 |
| 14 | GO:0009735: response to cytokinin | 6.25E-06 |
| 15 | GO:0051131: chaperone-mediated protein complex assembly | 6.48E-06 |
| 16 | GO:0006626: protein targeting to mitochondrion | 6.58E-06 |
| 17 | GO:0009651: response to salt stress | 1.51E-05 |
| 18 | GO:0009955: adaxial/abaxial pattern specification | 4.28E-05 |
| 19 | GO:0042026: protein refolding | 4.28E-05 |
| 20 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 1.20E-04 |
| 21 | GO:0000494: box C/D snoRNA 3'-end processing | 1.20E-04 |
| 22 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.20E-04 |
| 23 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.20E-04 |
| 24 | GO:1990258: histone glutamine methylation | 1.20E-04 |
| 25 | GO:0006407: rRNA export from nucleus | 1.20E-04 |
| 26 | GO:1990542: mitochondrial transmembrane transport | 1.20E-04 |
| 27 | GO:0009408: response to heat | 1.60E-04 |
| 28 | GO:0010162: seed dormancy process | 1.67E-04 |
| 29 | GO:0055129: L-proline biosynthetic process | 2.77E-04 |
| 30 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 2.77E-04 |
| 31 | GO:0008283: cell proliferation | 3.14E-04 |
| 32 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.09E-04 |
| 33 | GO:0042256: mature ribosome assembly | 4.58E-04 |
| 34 | GO:0045039: protein import into mitochondrial inner membrane | 4.58E-04 |
| 35 | GO:0055074: calcium ion homeostasis | 4.58E-04 |
| 36 | GO:0006954: inflammatory response | 4.58E-04 |
| 37 | GO:1902626: assembly of large subunit precursor of preribosome | 4.58E-04 |
| 38 | GO:0009294: DNA mediated transformation | 5.89E-04 |
| 39 | GO:0006166: purine ribonucleoside salvage | 6.57E-04 |
| 40 | GO:0006168: adenine salvage | 6.57E-04 |
| 41 | GO:0044205: 'de novo' UMP biosynthetic process | 8.72E-04 |
| 42 | GO:0044209: AMP salvage | 1.10E-03 |
| 43 | GO:0071493: cellular response to UV-B | 1.10E-03 |
| 44 | GO:0031167: rRNA methylation | 1.10E-03 |
| 45 | GO:0006561: proline biosynthetic process | 1.35E-03 |
| 46 | GO:0016444: somatic cell DNA recombination | 1.61E-03 |
| 47 | GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 1.61E-03 |
| 48 | GO:0009423: chorismate biosynthetic process | 1.61E-03 |
| 49 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 1.89E-03 |
| 50 | GO:0009793: embryo development ending in seed dormancy | 2.01E-03 |
| 51 | GO:0009690: cytokinin metabolic process | 2.19E-03 |
| 52 | GO:0000028: ribosomal small subunit assembly | 2.19E-03 |
| 53 | GO:0050821: protein stabilization | 2.19E-03 |
| 54 | GO:0001510: RNA methylation | 2.50E-03 |
| 55 | GO:0098656: anion transmembrane transport | 2.82E-03 |
| 56 | GO:0000387: spliceosomal snRNP assembly | 3.16E-03 |
| 57 | GO:0090332: stomatal closure | 3.16E-03 |
| 58 | GO:0009965: leaf morphogenesis | 3.28E-03 |
| 59 | GO:0010015: root morphogenesis | 3.88E-03 |
| 60 | GO:0006913: nucleocytoplasmic transport | 3.88E-03 |
| 61 | GO:0009073: aromatic amino acid family biosynthetic process | 3.88E-03 |
| 62 | GO:0006364: rRNA processing | 3.93E-03 |
| 63 | GO:0006820: anion transport | 4.26E-03 |
| 64 | GO:0010229: inflorescence development | 4.64E-03 |
| 65 | GO:0048467: gynoecium development | 5.04E-03 |
| 66 | GO:0009116: nucleoside metabolic process | 6.32E-03 |
| 67 | GO:0010187: negative regulation of seed germination | 6.32E-03 |
| 68 | GO:0006334: nucleosome assembly | 7.22E-03 |
| 69 | GO:0015992: proton transport | 7.22E-03 |
| 70 | GO:0030433: ubiquitin-dependent ERAD pathway | 7.69E-03 |
| 71 | GO:0008033: tRNA processing | 9.68E-03 |
| 72 | GO:0000413: protein peptidyl-prolyl isomerization | 9.68E-03 |
| 73 | GO:0006520: cellular amino acid metabolic process | 1.02E-02 |
| 74 | GO:0010197: polar nucleus fusion | 1.02E-02 |
| 75 | GO:0009791: post-embryonic development | 1.13E-02 |
| 76 | GO:0080156: mitochondrial mRNA modification | 1.18E-02 |
| 77 | GO:0032502: developmental process | 1.24E-02 |
| 78 | GO:0010286: heat acclimation | 1.41E-02 |
| 79 | GO:0009816: defense response to bacterium, incompatible interaction | 1.60E-02 |
| 80 | GO:0016049: cell growth | 1.79E-02 |
| 81 | GO:0006414: translational elongation | 1.82E-02 |
| 82 | GO:0010311: lateral root formation | 1.92E-02 |
| 83 | GO:0048527: lateral root development | 2.05E-02 |
| 84 | GO:0010043: response to zinc ion | 2.05E-02 |
| 85 | GO:0000724: double-strand break repair via homologous recombination | 2.12E-02 |
| 86 | GO:0009853: photorespiration | 2.19E-02 |
| 87 | GO:0000154: rRNA modification | 2.85E-02 |
| 88 | GO:0015031: protein transport | 3.60E-02 |
| 89 | GO:0009409: response to cold | 3.89E-02 |
| 90 | GO:0016569: covalent chromatin modification | 4.00E-02 |
| 91 | GO:0009908: flower development | 4.39E-02 |
| 92 | GO:0000398: mRNA splicing, via spliceosome | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004070: aspartate carbamoyltransferase activity | 0.00E+00 |
| 2 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 3 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 4 | GO:0004735: pyrroline-5-carboxylate reductase activity | 0.00E+00 |
| 5 | GO:0004107: chorismate synthase activity | 0.00E+00 |
| 6 | GO:0003735: structural constituent of ribosome | 8.33E-46 |
| 7 | GO:0003729: mRNA binding | 2.65E-15 |
| 8 | GO:0051082: unfolded protein binding | 4.31E-14 |
| 9 | GO:0044183: protein binding involved in protein folding | 4.07E-06 |
| 10 | GO:0008097: 5S rRNA binding | 6.48E-06 |
| 11 | GO:0030515: snoRNA binding | 5.77E-05 |
| 12 | GO:1990259: histone-glutamine methyltransferase activity | 1.20E-04 |
| 13 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.60E-04 |
| 14 | GO:0003746: translation elongation factor activity | 2.23E-04 |
| 15 | GO:0016743: carboxyl- or carbamoyltransferase activity | 2.77E-04 |
| 16 | GO:0003723: RNA binding | 2.98E-04 |
| 17 | GO:0004407: histone deacetylase activity | 4.09E-04 |
| 18 | GO:0070180: large ribosomal subunit rRNA binding | 4.58E-04 |
| 19 | GO:0008649: rRNA methyltransferase activity | 4.58E-04 |
| 20 | GO:0004298: threonine-type endopeptidase activity | 4.95E-04 |
| 21 | GO:0017077: oxidative phosphorylation uncoupler activity | 6.57E-04 |
| 22 | GO:0003999: adenine phosphoribosyltransferase activity | 6.57E-04 |
| 23 | GO:0005507: copper ion binding | 8.87E-04 |
| 24 | GO:0004017: adenylate kinase activity | 1.61E-03 |
| 25 | GO:0015288: porin activity | 2.19E-03 |
| 26 | GO:0008135: translation factor activity, RNA binding | 2.50E-03 |
| 27 | GO:0008308: voltage-gated anion channel activity | 2.50E-03 |
| 28 | GO:0031072: heat shock protein binding | 4.64E-03 |
| 29 | GO:0019843: rRNA binding | 6.98E-03 |
| 30 | GO:0004540: ribonuclease activity | 7.22E-03 |
| 31 | GO:0010181: FMN binding | 1.07E-02 |
| 32 | GO:0016597: amino acid binding | 1.47E-02 |
| 33 | GO:0030246: carbohydrate binding | 1.60E-02 |
| 34 | GO:0008233: peptidase activity | 1.83E-02 |
| 35 | GO:0050897: cobalt ion binding | 2.05E-02 |
| 36 | GO:0003697: single-stranded DNA binding | 2.19E-02 |
| 37 | GO:0042393: histone binding | 2.41E-02 |
| 38 | GO:0005509: calcium ion binding | 2.42E-02 |
| 39 | GO:0003924: GTPase activity | 2.74E-02 |
| 40 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 3 | GO:0043186: P granule | 0.00E+00 |
| 4 | GO:0022626: cytosolic ribosome | 7.36E-42 |
| 5 | GO:0022625: cytosolic large ribosomal subunit | 1.28E-33 |
| 6 | GO:0005730: nucleolus | 6.00E-29 |
| 7 | GO:0005840: ribosome | 1.96E-28 |
| 8 | GO:0005829: cytosol | 2.41E-23 |
| 9 | GO:0005774: vacuolar membrane | 4.01E-17 |
| 10 | GO:0022627: cytosolic small ribosomal subunit | 1.92E-15 |
| 11 | GO:0005737: cytoplasm | 8.33E-15 |
| 12 | GO:0009506: plasmodesma | 1.28E-13 |
| 13 | GO:0005773: vacuole | 4.90E-12 |
| 14 | GO:0015934: large ribosomal subunit | 1.00E-10 |
| 15 | GO:0016020: membrane | 6.29E-08 |
| 16 | GO:0005788: endoplasmic reticulum lumen | 4.64E-06 |
| 17 | GO:0005618: cell wall | 4.69E-06 |
| 18 | GO:0005739: mitochondrion | 1.26E-05 |
| 19 | GO:0005758: mitochondrial intermembrane space | 1.45E-05 |
| 20 | GO:0031428: box C/D snoRNP complex | 3.03E-05 |
| 21 | GO:0019773: proteasome core complex, alpha-subunit complex | 9.46E-05 |
| 22 | GO:0030686: 90S preribosome | 1.20E-04 |
| 23 | GO:0005783: endoplasmic reticulum | 2.11E-04 |
| 24 | GO:0032040: small-subunit processome | 2.26E-04 |
| 25 | GO:0009507: chloroplast | 3.50E-04 |
| 26 | GO:0034719: SMN-Sm protein complex | 4.58E-04 |
| 27 | GO:0005886: plasma membrane | 4.67E-04 |
| 28 | GO:0005839: proteasome core complex | 4.95E-04 |
| 29 | GO:0015935: small ribosomal subunit | 4.95E-04 |
| 30 | GO:0005682: U5 snRNP | 8.72E-04 |
| 31 | GO:0005743: mitochondrial inner membrane | 8.78E-04 |
| 32 | GO:0097526: spliceosomal tri-snRNP complex | 1.10E-03 |
| 33 | GO:0005687: U4 snRNP | 1.10E-03 |
| 34 | GO:0005759: mitochondrial matrix | 1.26E-03 |
| 35 | GO:0005689: U12-type spliceosomal complex | 1.61E-03 |
| 36 | GO:0071004: U2-type prespliceosome | 2.19E-03 |
| 37 | GO:0046930: pore complex | 2.50E-03 |
| 38 | GO:0005742: mitochondrial outer membrane translocase complex | 2.50E-03 |
| 39 | GO:0005685: U1 snRNP | 2.82E-03 |
| 40 | GO:0015030: Cajal body | 3.16E-03 |
| 41 | GO:0071011: precatalytic spliceosome | 3.16E-03 |
| 42 | GO:0005686: U2 snRNP | 3.51E-03 |
| 43 | GO:0005852: eukaryotic translation initiation factor 3 complex | 3.88E-03 |
| 44 | GO:0071013: catalytic step 2 spliceosome | 3.88E-03 |
| 45 | GO:0000502: proteasome complex | 3.93E-03 |
| 46 | GO:0019013: viral nucleocapsid | 4.64E-03 |
| 47 | GO:0005747: mitochondrial respiratory chain complex I | 4.79E-03 |
| 48 | GO:0005741: mitochondrial outer membrane | 7.22E-03 |
| 49 | GO:0009505: plant-type cell wall | 9.54E-03 |
| 50 | GO:0016592: mediator complex | 1.24E-02 |
| 51 | GO:0005635: nuclear envelope | 3.41E-02 |
| 52 | GO:0005681: spliceosomal complex | 3.66E-02 |
| 53 | GO:0005794: Golgi apparatus | 4.36E-02 |
| 54 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.44E-02 |