co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G19850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045176: apical protein localization	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:1901698: response to nitrogen compound	0.00E+00
5	GO:0046620: regulation of organ growth	2.91E-08
6	GO:0015976: carbon utilization	1.84E-07
7	GO:0009926: auxin polar transport	6.37E-06
8	GO:0015979: photosynthesis	8.77E-06
9	GO:2000122: negative regulation of stomatal complex development	3.41E-05
10	GO:0010037: response to carbon dioxide	3.41E-05
11	GO:0006833: water transport	4.66E-05
12	GO:0006810: transport	9.29E-05
13	GO:0042335: cuticle development	1.40E-04
14	GO:0034220: ion transmembrane transport	1.40E-04
15	GO:0046520: sphingoid biosynthetic process	2.18E-04
16	GO:0070509: calcium ion import	2.18E-04
17	GO:0007263: nitric oxide mediated signal transduction	2.18E-04
18	GO:0000481: maturation of 5S rRNA	2.18E-04
19	GO:0042371: vitamin K biosynthetic process	2.18E-04
20	GO:0034337: RNA folding	2.18E-04
21	GO:0071588: hydrogen peroxide mediated signaling pathway	2.18E-04
22	GO:0010205: photoinhibition	3.36E-04
23	GO:0048829: root cap development	3.94E-04
24	GO:0010411: xyloglucan metabolic process	4.29E-04
25	GO:0000038: very long-chain fatty acid metabolic process	4.56E-04
26	GO:0009773: photosynthetic electron transport in photosystem I	4.56E-04
27	GO:0010115: regulation of abscisic acid biosynthetic process	4.86E-04
28	GO:0001736: establishment of planar polarity	4.86E-04
29	GO:0010024: phytochromobilin biosynthetic process	4.86E-04
30	GO:0009416: response to light stimulus	5.09E-04
31	GO:0006006: glucose metabolic process	5.92E-04
32	GO:0009725: response to hormone	5.92E-04
33	GO:0009733: response to auxin	7.39E-04
34	GO:0006788: heme oxidation	7.90E-04
35	GO:0006518: peptide metabolic process	7.90E-04
36	GO:0015840: urea transport	7.90E-04
37	GO:0071705: nitrogen compound transport	7.90E-04
38	GO:0006636: unsaturated fatty acid biosynthetic process	8.29E-04
39	GO:0042546: cell wall biogenesis	9.53E-04
40	GO:0003333: amino acid transmembrane transport	1.10E-03
41	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.13E-03
42	GO:0009800: cinnamic acid biosynthetic process	1.13E-03
43	GO:0009650: UV protection	1.13E-03
44	GO:0051639: actin filament network formation	1.13E-03
45	GO:0080170: hydrogen peroxide transmembrane transport	1.13E-03
46	GO:0030104: water homeostasis	1.50E-03
47	GO:0051764: actin crosslink formation	1.50E-03
48	GO:0071249: cellular response to nitrate	1.50E-03
49	GO:0006183: GTP biosynthetic process	1.50E-03
50	GO:0000413: protein peptidyl-prolyl isomerization	1.66E-03
51	GO:0071555: cell wall organization	2.06E-03
52	GO:0009913: epidermal cell differentiation	2.35E-03
53	GO:0006559: L-phenylalanine catabolic process	2.35E-03
54	GO:0010190: cytochrome b6f complex assembly	2.35E-03
55	GO:0006596: polyamine biosynthetic process	2.35E-03
56	GO:0006561: proline biosynthetic process	2.35E-03
57	GO:0048759: xylem vessel member cell differentiation	2.35E-03
58	GO:0006751: glutathione catabolic process	2.35E-03
59	GO:0048827: phyllome development	2.35E-03
60	GO:0042549: photosystem II stabilization	2.35E-03
61	GO:0042372: phylloquinone biosynthetic process	2.83E-03
62	GO:0009612: response to mechanical stimulus	2.83E-03
63	GO:0010019: chloroplast-nucleus signaling pathway	2.83E-03
64	GO:0080086: stamen filament development	2.83E-03
65	GO:1900057: positive regulation of leaf senescence	3.33E-03
66	GO:0009645: response to low light intensity stimulus	3.33E-03
67	GO:0010444: guard mother cell differentiation	3.33E-03
68	GO:1900056: negative regulation of leaf senescence	3.33E-03
69	GO:0030497: fatty acid elongation	3.33E-03
70	GO:0006633: fatty acid biosynthetic process	3.64E-03
71	GO:0030091: protein repair	3.86E-03
72	GO:0032508: DNA duplex unwinding	3.86E-03
73	GO:0008610: lipid biosynthetic process	3.86E-03
74	GO:0018298: protein-chromophore linkage	4.12E-03
75	GO:0009932: cell tip growth	4.42E-03
76	GO:0009827: plant-type cell wall modification	4.42E-03
77	GO:0005975: carbohydrate metabolic process	4.69E-03
78	GO:0010119: regulation of stomatal movement	4.76E-03
79	GO:0006865: amino acid transport	4.99E-03
80	GO:0009051: pentose-phosphate shunt, oxidative branch	5.00E-03
81	GO:0009638: phototropism	5.62E-03
82	GO:0009734: auxin-activated signaling pathway	5.89E-03
83	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.25E-03
84	GO:0009688: abscisic acid biosynthetic process	6.25E-03
85	GO:0019684: photosynthesis, light reaction	6.91E-03
86	GO:0009089: lysine biosynthetic process via diaminopimelate	6.91E-03
87	GO:1903507: negative regulation of nucleic acid-templated transcription	6.91E-03
88	GO:0009750: response to fructose	6.91E-03
89	GO:0048765: root hair cell differentiation	6.91E-03
90	GO:0009414: response to water deprivation	6.92E-03
91	GO:0042254: ribosome biogenesis	7.32E-03
92	GO:0015706: nitrate transport	7.60E-03
93	GO:0010628: positive regulation of gene expression	8.30E-03
94	GO:0010229: inflorescence development	8.30E-03
95	GO:0010207: photosystem II assembly	9.03E-03
96	GO:0019253: reductive pentose-phosphate cycle	9.03E-03
97	GO:0010540: basipetal auxin transport	9.03E-03
98	GO:0010143: cutin biosynthetic process	9.03E-03
99	GO:0006857: oligopeptide transport	9.73E-03
100	GO:0010167: response to nitrate	9.79E-03
101	GO:0010025: wax biosynthetic process	1.06E-02
102	GO:0019762: glucosinolate catabolic process	1.06E-02
103	GO:0000027: ribosomal large subunit assembly	1.14E-02
104	GO:0051017: actin filament bundle assembly	1.14E-02
105	GO:0005992: trehalose biosynthetic process	1.14E-02
106	GO:0006487: protein N-linked glycosylation	1.14E-02
107	GO:0055085: transmembrane transport	1.20E-02
108	GO:0009768: photosynthesis, light harvesting in photosystem I	1.22E-02
109	GO:0009409: response to cold	1.22E-02
110	GO:0031408: oxylipin biosynthetic process	1.30E-02
111	GO:0048511: rhythmic process	1.30E-02
112	GO:0006869: lipid transport	1.33E-02
113	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.39E-02
114	GO:0009411: response to UV	1.48E-02
115	GO:0016042: lipid catabolic process	1.49E-02
116	GO:0006284: base-excision repair	1.57E-02
117	GO:0019722: calcium-mediated signaling	1.57E-02
118	GO:0042127: regulation of cell proliferation	1.57E-02
119	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.66E-02
120	GO:0042391: regulation of membrane potential	1.75E-02
121	GO:0010087: phloem or xylem histogenesis	1.75E-02
122	GO:0009958: positive gravitropism	1.85E-02
123	GO:0010182: sugar mediated signaling pathway	1.85E-02
124	GO:0042744: hydrogen peroxide catabolic process	1.85E-02
125	GO:0045489: pectin biosynthetic process	1.85E-02
126	GO:0042752: regulation of circadian rhythm	1.95E-02
127	GO:0048825: cotyledon development	2.05E-02
128	GO:0071554: cell wall organization or biogenesis	2.15E-02
129	GO:0000302: response to reactive oxygen species	2.15E-02
130	GO:0010583: response to cyclopentenone	2.25E-02
131	GO:0042742: defense response to bacterium	2.41E-02
132	GO:0006470: protein dephosphorylation	2.57E-02
133	GO:0007267: cell-cell signaling	2.57E-02
134	GO:0009737: response to abscisic acid	2.64E-02
135	GO:0009911: positive regulation of flower development	2.79E-02
136	GO:0042128: nitrate assimilation	3.02E-02
137	GO:0055114: oxidation-reduction process	3.10E-02
138	GO:0016311: dephosphorylation	3.25E-02
139	GO:0009611: response to wounding	3.26E-02
140	GO:0009826: unidimensional cell growth	3.34E-02
141	GO:0030244: cellulose biosynthetic process	3.37E-02
142	GO:0009817: defense response to fungus, incompatible interaction	3.37E-02
143	GO:0010311: lateral root formation	3.49E-02
144	GO:0000160: phosphorelay signal transduction system	3.49E-02
145	GO:0009407: toxin catabolic process	3.62E-02
146	GO:0010218: response to far red light	3.62E-02
147	GO:0009834: plant-type secondary cell wall biogenesis	3.62E-02
148	GO:0009631: cold acclimation	3.74E-02
149	GO:0007049: cell cycle	3.87E-02
150	GO:0009867: jasmonic acid mediated signaling pathway	3.99E-02
151	GO:0009637: response to blue light	3.99E-02
152	GO:0034599: cellular response to oxidative stress	4.12E-02
153	GO:0009640: photomorphogenesis	4.78E-02
154	GO:0010114: response to red light	4.78E-02
155	GO:0009744: response to sucrose	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0010487: thermospermine synthase activity	0.00E+00
2	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
5	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
6	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
7	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
8	GO:0015250: water channel activity	2.35E-05
9	GO:0004089: carbonate dehydratase activity	2.64E-05
10	GO:0010328: auxin influx transmembrane transporter activity	3.41E-05
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.33E-04
12	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.10E-04
13	GO:0045485: omega-6 fatty acid desaturase activity	2.18E-04
14	GO:0015200: methylammonium transmembrane transporter activity	2.18E-04
15	GO:0016768: spermine synthase activity	2.18E-04
16	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	2.18E-04
17	GO:0000170: sphingosine hydroxylase activity	2.18E-04
18	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.18E-04
19	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.29E-04
20	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.86E-04
21	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.86E-04
22	GO:0003839: gamma-glutamylcyclotransferase activity	4.86E-04
23	GO:0003938: IMP dehydrogenase activity	4.86E-04
24	GO:0042284: sphingolipid delta-4 desaturase activity	4.86E-04
25	GO:0004871: signal transducer activity	5.77E-04
26	GO:0004565: beta-galactosidase activity	5.92E-04
27	GO:0003993: acid phosphatase activity	6.99E-04
28	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.90E-04
29	GO:0050734: hydroxycinnamoyltransferase activity	7.90E-04
30	GO:0045548: phenylalanine ammonia-lyase activity	7.90E-04
31	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	8.29E-04
32	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	8.29E-04
33	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	8.29E-04
34	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	8.86E-04
35	GO:0005528: FK506 binding	9.15E-04
36	GO:0015293: symporter activity	1.05E-03
37	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.13E-03
38	GO:0001872: (1->3)-beta-D-glucan binding	1.13E-03
39	GO:0052793: pectin acetylesterase activity	1.50E-03
40	GO:0004392: heme oxygenase (decyclizing) activity	1.50E-03
41	GO:0015204: urea transmembrane transporter activity	1.50E-03
42	GO:0010011: auxin binding	1.50E-03
43	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.50E-03
44	GO:0008725: DNA-3-methyladenine glycosylase activity	1.91E-03
45	GO:0009922: fatty acid elongase activity	1.91E-03
46	GO:0004872: receptor activity	2.06E-03
47	GO:0052689: carboxylic ester hydrolase activity	2.25E-03
48	GO:0004130: cytochrome-c peroxidase activity	2.35E-03
49	GO:0016208: AMP binding	2.35E-03
50	GO:0016688: L-ascorbate peroxidase activity	2.35E-03
51	GO:0008519: ammonium transmembrane transporter activity	2.35E-03
52	GO:0004629: phospholipase C activity	2.35E-03
53	GO:0005215: transporter activity	2.51E-03
54	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.82E-03
55	GO:0051753: mannan synthase activity	2.83E-03
56	GO:0005261: cation channel activity	2.83E-03
57	GO:0004435: phosphatidylinositol phospholipase C activity	2.83E-03
58	GO:0005242: inward rectifier potassium channel activity	2.83E-03
59	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.83E-03
60	GO:0004722: protein serine/threonine phosphatase activity	2.93E-03
61	GO:0016413: O-acetyltransferase activity	2.99E-03
62	GO:0016168: chlorophyll binding	3.35E-03
63	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.42E-03
64	GO:0042802: identical protein binding	5.56E-03
65	GO:0008289: lipid binding	5.79E-03
66	GO:0050661: NADP binding	5.95E-03
67	GO:0004864: protein phosphatase inhibitor activity	6.25E-03
68	GO:0004805: trehalose-phosphatase activity	6.25E-03
69	GO:0015386: potassium:proton antiporter activity	6.91E-03
70	GO:0008794: arsenate reductase (glutaredoxin) activity	6.91E-03
71	GO:0016788: hydrolase activity, acting on ester bonds	7.32E-03
72	GO:0008081: phosphoric diester hydrolase activity	8.30E-03
73	GO:0004022: alcohol dehydrogenase (NAD) activity	8.30E-03
74	GO:0005262: calcium channel activity	8.30E-03
75	GO:0030552: cAMP binding	9.79E-03
76	GO:0030553: cGMP binding	9.79E-03
77	GO:0015171: amino acid transmembrane transporter activity	1.01E-02
78	GO:0031409: pigment binding	1.06E-02
79	GO:0003714: transcription corepressor activity	1.14E-02
80	GO:0005216: ion channel activity	1.22E-02
81	GO:0015079: potassium ion transmembrane transporter activity	1.22E-02
82	GO:0022857: transmembrane transporter activity	1.22E-02
83	GO:0016746: transferase activity, transferring acyl groups	1.33E-02
84	GO:0022891: substrate-specific transmembrane transporter activity	1.48E-02
85	GO:0008514: organic anion transmembrane transporter activity	1.57E-02
86	GO:0030551: cyclic nucleotide binding	1.75E-02
87	GO:0030276: clathrin binding	1.85E-02
88	GO:0001085: RNA polymerase II transcription factor binding	1.85E-02
89	GO:0000156: phosphorelay response regulator activity	2.36E-02
90	GO:0051015: actin filament binding	2.36E-02
91	GO:0016791: phosphatase activity	2.46E-02
92	GO:0008375: acetylglucosaminyltransferase activity	3.02E-02
93	GO:0030247: polysaccharide binding	3.14E-02
94	GO:0102483: scopolin beta-glucosidase activity	3.14E-02
95	GO:0016491: oxidoreductase activity	3.61E-02
96	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.62E-02
97	GO:0004222: metalloendopeptidase activity	3.62E-02
98	GO:0030145: manganese ion binding	3.74E-02
99	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.74E-02
100	GO:0008422: beta-glucosidase activity	4.25E-02
101	GO:0004364: glutathione transferase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	5.97E-09
3	GO:0009543: chloroplast thylakoid lumen	8.54E-09
4	GO:0009507: chloroplast	1.88E-08
5	GO:0048046: apoplast	1.37E-07
6	GO:0009579: thylakoid	3.33E-07
7	GO:0009505: plant-type cell wall	5.50E-05
8	GO:0009654: photosystem II oxygen evolving complex	6.42E-05
9	GO:0016020: membrane	7.31E-05
10	GO:0009941: chloroplast envelope	8.15E-05
11	GO:0031977: thylakoid lumen	8.72E-05
12	GO:0042807: central vacuole	1.47E-04
13	GO:0005618: cell wall	1.59E-04
14	GO:0019898: extrinsic component of membrane	1.91E-04
15	GO:0043674: columella	2.18E-04
16	GO:0031225: anchored component of membrane	3.14E-04
17	GO:0005886: plasma membrane	3.62E-04
18	GO:0046658: anchored component of plasma membrane	1.10E-03
19	GO:0032432: actin filament bundle	1.13E-03
20	GO:0005887: integral component of plasma membrane	1.31E-03
21	GO:0009570: chloroplast stroma	2.09E-03
22	GO:0009534: chloroplast thylakoid	2.92E-03
23	GO:0009986: cell surface	3.33E-03
24	GO:0000326: protein storage vacuole	4.42E-03
25	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.00E-03
26	GO:0008180: COP9 signalosome	5.00E-03
27	GO:0009506: plasmodesma	6.10E-03
28	GO:0005884: actin filament	6.91E-03
29	GO:0032040: small-subunit processome	7.60E-03
30	GO:0031012: extracellular matrix	8.30E-03
31	GO:0030095: chloroplast photosystem II	9.03E-03
32	GO:0031969: chloroplast membrane	9.40E-03
33	GO:0030076: light-harvesting complex	9.79E-03
34	GO:0005576: extracellular region	1.12E-02
35	GO:0030136: clathrin-coated vesicle	1.66E-02
36	GO:0005770: late endosome	1.85E-02
37	GO:0009522: photosystem I	1.95E-02
38	GO:0009523: photosystem II	2.05E-02
39	GO:0009705: plant-type vacuole membrane	2.25E-02
40	GO:0016021: integral component of membrane	2.52E-02
41	GO:0005778: peroxisomal membrane	2.57E-02
42	GO:0010319: stromule	2.57E-02
43	GO:0005667: transcription factor complex	3.02E-02
44	GO:0019005: SCF ubiquitin ligase complex	3.37E-02