Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G19290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904962: plastid to vacuole vesicle-mediated transport0.00E+00
2GO:0044249: cellular biosynthetic process0.00E+00
3GO:0071211: protein targeting to vacuole involved in autophagy0.00E+00
4GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity0.00E+00
5GO:0009594: detection of nutrient0.00E+00
6GO:0010111: glyoxysome organization0.00E+00
7GO:0010213: non-photoreactive DNA repair2.53E-05
8GO:0034063: stress granule assembly2.53E-05
9GO:0010603: regulation of cytoplasmic mRNA processing body assembly2.53E-05
10GO:0009695: jasmonic acid biosynthetic process5.21E-05
11GO:0019395: fatty acid oxidation6.44E-05
12GO:0006633: fatty acid biosynthetic process8.61E-05
13GO:0010150: leaf senescence9.90E-05
14GO:0006635: fatty acid beta-oxidation1.30E-04
15GO:0006914: autophagy1.59E-04
16GO:0042128: nitrate assimilation2.16E-04
17GO:0042594: response to starvation2.30E-04
18GO:0044804: nucleophagy2.30E-04
19GO:0010483: pollen tube reception2.30E-04
20GO:0006552: leucine catabolic process2.30E-04
21GO:0010508: positive regulation of autophagy2.30E-04
22GO:0009817: defense response to fungus, incompatible interaction2.54E-04
23GO:0000422: mitophagy2.95E-04
24GO:0030308: negative regulation of cell growth2.95E-04
25GO:0000045: autophagosome assembly3.65E-04
26GO:0003006: developmental process involved in reproduction3.65E-04
27GO:0019509: L-methionine salvage from methylthioadenosine4.36E-04
28GO:0010050: vegetative phase change5.11E-04
29GO:0070413: trehalose metabolism in response to stress5.89E-04
30GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay7.52E-04
31GO:0010345: suberin biosynthetic process7.52E-04
32GO:0007338: single fertilization7.52E-04
33GO:0008202: steroid metabolic process8.38E-04
34GO:0010143: cutin biosynthetic process1.30E-03
35GO:0071732: cellular response to nitric oxide1.40E-03
36GO:0010025: wax biosynthetic process1.50E-03
37GO:0006289: nucleotide-excision repair1.61E-03
38GO:2000377: regulation of reactive oxygen species metabolic process1.61E-03
39GO:0005992: trehalose biosynthetic process1.61E-03
40GO:0008299: isoprenoid biosynthetic process1.72E-03
41GO:0031408: oxylipin biosynthetic process1.83E-03
42GO:0030433: ubiquitin-dependent ERAD pathway1.95E-03
43GO:0071369: cellular response to ethylene stimulus2.06E-03
44GO:0009306: protein secretion2.18E-03
45GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.30E-03
46GO:0080022: primary root development2.42E-03
47GO:0010051: xylem and phloem pattern formation2.42E-03
48GO:0042335: cuticle development2.42E-03
49GO:0010182: sugar mediated signaling pathway2.55E-03
50GO:0009741: response to brassinosteroid2.55E-03
51GO:0046777: protein autophosphorylation2.63E-03
52GO:0061025: membrane fusion2.68E-03
53GO:0009791: post-embryonic development2.80E-03
54GO:0071281: cellular response to iron ion3.21E-03
55GO:0006904: vesicle docking involved in exocytosis3.48E-03
56GO:0009911: positive regulation of flower development3.77E-03
57GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.91E-03
58GO:0048573: photoperiodism, flowering4.21E-03
59GO:0009873: ethylene-activated signaling pathway4.64E-03
60GO:0009910: negative regulation of flower development4.99E-03
61GO:0009738: abscisic acid-activated signaling pathway6.16E-03
62GO:0009611: response to wounding6.51E-03
63GO:0035556: intracellular signal transduction6.72E-03
64GO:0010224: response to UV-B7.97E-03
65GO:0009909: regulation of flower development8.35E-03
66GO:0009742: brassinosteroid mediated signaling pathway1.04E-02
67GO:0000398: mRNA splicing, via spliceosome1.10E-02
68GO:0009845: seed germination1.23E-02
69GO:0009414: response to water deprivation1.26E-02
70GO:0006413: translational initiation1.39E-02
71GO:0010228: vegetative to reproductive phase transition of meristem1.51E-02
72GO:0015031: protein transport1.65E-02
73GO:0005975: carbohydrate metabolic process1.97E-02
74GO:0006970: response to osmotic stress2.10E-02
75GO:0009723: response to ethylene2.21E-02
76GO:0016192: vesicle-mediated transport2.41E-02
77GO:0006468: protein phosphorylation2.68E-02
78GO:0006886: intracellular protein transport2.70E-02
79GO:0006869: lipid transport2.82E-02
80GO:0009408: response to heat3.07E-02
81GO:0006281: DNA repair3.07E-02
82GO:0048364: root development3.16E-02
83GO:0050832: defense response to fungus3.84E-02
84GO:0009908: flower development4.30E-02
RankGO TermAdjusted P value
1GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
2GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
3GO:0019707: protein-cysteine S-acyltransferase activity2.53E-05
4GO:0030275: LRR domain binding2.53E-05
5GO:0004485: methylcrotonoyl-CoA carboxylase activity2.53E-05
6GO:0035671: enone reductase activity2.53E-05
7GO:0008692: 3-hydroxybutyryl-CoA epimerase activity2.53E-05
8GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity6.44E-05
9GO:0003988: acetyl-CoA C-acyltransferase activity6.44E-05
10GO:0004075: biotin carboxylase activity1.13E-04
11GO:0005483: soluble NSF attachment protein activity1.13E-04
12GO:0004180: carboxypeptidase activity1.13E-04
13GO:0004165: dodecenoyl-CoA delta-isomerase activity1.69E-04
14GO:0004300: enoyl-CoA hydratase activity1.69E-04
15GO:0019776: Atg8 ligase activity2.30E-04
16GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway2.30E-04
17GO:0019905: syntaxin binding2.30E-04
18GO:0004029: aldehyde dehydrogenase (NAD) activity3.65E-04
19GO:0019887: protein kinase regulator activity4.36E-04
20GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.38E-04
21GO:0004805: trehalose-phosphatase activity9.24E-04
22GO:0019706: protein-cysteine S-palmitoyltransferase activity1.83E-03
23GO:0004527: exonuclease activity2.55E-03
24GO:0016853: isomerase activity2.68E-03
25GO:0004518: nuclease activity3.07E-03
26GO:0004672: protein kinase activity3.27E-03
27GO:0016791: phosphatase activity3.34E-03
28GO:0005515: protein binding3.49E-03
29GO:0008236: serine-type peptidase activity4.36E-03
30GO:0005524: ATP binding4.86E-03
31GO:0050897: cobalt ion binding4.99E-03
32GO:0003697: single-stranded DNA binding5.31E-03
33GO:0005525: GTP binding1.05E-02
34GO:0005215: transporter activity1.43E-02
35GO:0004674: protein serine/threonine kinase activity1.52E-02
36GO:0003743: translation initiation factor activity1.63E-02
37GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.73E-02
38GO:0042802: identical protein binding1.73E-02
39GO:0004842: ubiquitin-protein transferase activity1.79E-02
40GO:0003729: mRNA binding1.93E-02
41GO:0003682: chromatin binding2.07E-02
42GO:0003924: GTPase activity3.07E-02
43GO:0004519: endonuclease activity3.26E-02
44GO:0016757: transferase activity, transferring glycosyl groups4.39E-02
45GO:0000166: nucleotide binding4.62E-02
RankGO TermAdjusted P value
1GO:0043680: filiform apparatus0.00E+00
2GO:0000153: cytoplasmic ubiquitin ligase complex0.00E+00
3GO:0005684: U2-type spliceosomal complex0.00E+00
4GO:0000152: nuclear ubiquitin ligase complex2.53E-05
5GO:0005851: eukaryotic translation initiation factor 2B complex3.65E-04
6GO:0005774: vacuolar membrane3.79E-04
7GO:0009514: glyoxysome6.69E-04
8GO:0034045: pre-autophagosomal structure membrane6.69E-04
9GO:0010494: cytoplasmic stress granule7.52E-04
10GO:0005686: U2 snRNP9.24E-04
11GO:0005765: lysosomal membrane1.01E-03
12GO:0005759: mitochondrial matrix1.19E-03
13GO:0030176: integral component of endoplasmic reticulum membrane1.40E-03
14GO:0000139: Golgi membrane2.95E-03
15GO:0043231: intracellular membrane-bounded organelle3.97E-03
16GO:0031201: SNARE complex5.98E-03
17GO:0005777: peroxisome7.31E-03
18GO:0005623: cell1.19E-02
19GO:0005829: cytosol1.88E-02
20GO:0031969: chloroplast membrane2.32E-02
21GO:0022626: cytosolic ribosome4.47E-02
Gene type



Gene DE type