co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G19130

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0039694: viral RNA genome replication	0.00E+00
2	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
3	GO:0002191: cap-dependent translational initiation	0.00E+00
4	GO:0032264: IMP salvage	0.00E+00
5	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
6	GO:0000188: inactivation of MAPK activity	0.00E+00
7	GO:0010398: xylogalacturonan metabolic process	0.00E+00
8	GO:0017126: nucleologenesis	0.00E+00
9	GO:0007160: cell-matrix adhesion	0.00E+00
10	GO:0010636: positive regulation of mitochondrial fusion	0.00E+00
11	GO:0080056: petal vascular tissue pattern formation	0.00E+00
12	GO:0048312: intracellular distribution of mitochondria	0.00E+00
13	GO:0000162: tryptophan biosynthetic process	3.70E-09
14	GO:0009617: response to bacterium	1.70E-07
15	GO:0042273: ribosomal large subunit biogenesis	1.75E-05
16	GO:0009851: auxin biosynthetic process	8.73E-05
17	GO:0046686: response to cadmium ion	9.85E-05
18	GO:0010583: response to cyclopentenone	1.07E-04
19	GO:0010120: camalexin biosynthetic process	1.30E-04
20	GO:0009699: phenylpropanoid biosynthetic process	1.30E-04
21	GO:0009700: indole phytoalexin biosynthetic process	1.48E-04
22	GO:0019673: GDP-mannose metabolic process	1.48E-04
23	GO:1901183: positive regulation of camalexin biosynthetic process	1.48E-04
24	GO:0034620: cellular response to unfolded protein	1.48E-04
25	GO:0006390: transcription from mitochondrial promoter	1.48E-04
26	GO:0009168: purine ribonucleoside monophosphate biosynthetic process	1.48E-04
27	GO:0042742: defense response to bacterium	1.52E-04
28	GO:0009682: induced systemic resistance	2.65E-04
29	GO:0052544: defense response by callose deposition in cell wall	2.65E-04
30	GO:0051258: protein polymerization	3.38E-04
31	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.38E-04
32	GO:0048826: cotyledon morphogenesis	3.38E-04
33	GO:1902626: assembly of large subunit precursor of preribosome	5.54E-04
34	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	5.54E-04
35	GO:0042256: mature ribosome assembly	5.54E-04
36	GO:0010338: leaf formation	5.54E-04
37	GO:0071456: cellular response to hypoxia	7.15E-04
38	GO:0043207: response to external biotic stimulus	7.93E-04
39	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	7.93E-04
40	GO:0009399: nitrogen fixation	7.93E-04
41	GO:0072583: clathrin-dependent endocytosis	7.93E-04
42	GO:0010116: positive regulation of abscisic acid biosynthetic process	7.93E-04
43	GO:2000114: regulation of establishment of cell polarity	7.93E-04
44	GO:0010600: regulation of auxin biosynthetic process	1.05E-03
45	GO:0000460: maturation of 5.8S rRNA	1.05E-03
46	GO:0010107: potassium ion import	1.05E-03
47	GO:0006542: glutamine biosynthetic process	1.05E-03
48	GO:0051781: positive regulation of cell division	1.05E-03
49	GO:0033320: UDP-D-xylose biosynthetic process	1.05E-03
50	GO:0006090: pyruvate metabolic process	1.33E-03
51	GO:0007029: endoplasmic reticulum organization	1.33E-03
52	GO:0010225: response to UV-C	1.33E-03
53	GO:0009630: gravitropism	1.37E-03
54	GO:0010252: auxin homeostasis	1.56E-03
55	GO:0010358: leaf shaping	1.63E-03
56	GO:0009759: indole glucosinolate biosynthetic process	1.63E-03
57	GO:0001731: formation of translation preinitiation complex	1.63E-03
58	GO:0000470: maturation of LSU-rRNA	1.63E-03
59	GO:0042732: D-xylose metabolic process	1.63E-03
60	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.96E-03
61	GO:0000054: ribosomal subunit export from nucleus	1.96E-03
62	GO:0009423: chorismate biosynthetic process	1.96E-03
63	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.96E-03
64	GO:1902074: response to salt	2.30E-03
65	GO:0009414: response to water deprivation	2.63E-03
66	GO:0009407: toxin catabolic process	2.65E-03
67	GO:0055114: oxidation-reduction process	2.65E-03
68	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.66E-03
69	GO:0006491: N-glycan processing	2.66E-03
70	GO:0048766: root hair initiation	2.66E-03
71	GO:0006875: cellular metal ion homeostasis	2.66E-03
72	GO:0006102: isocitrate metabolic process	2.66E-03
73	GO:0009737: response to abscisic acid	3.07E-03
74	GO:0006099: tricarboxylic acid cycle	3.17E-03
75	GO:0034765: regulation of ion transmembrane transport	3.44E-03
76	GO:0090333: regulation of stomatal closure	3.44E-03
77	GO:0010112: regulation of systemic acquired resistance	3.44E-03
78	GO:0009051: pentose-phosphate shunt, oxidative branch	3.44E-03
79	GO:0007064: mitotic sister chromatid cohesion	4.29E-03
80	GO:0009688: abscisic acid biosynthetic process	4.29E-03
81	GO:0009636: response to toxic substance	4.38E-03
82	GO:0009698: phenylpropanoid metabolic process	4.73E-03
83	GO:0009073: aromatic amino acid family biosynthetic process	4.73E-03
84	GO:0030148: sphingolipid biosynthetic process	4.73E-03
85	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.88E-03
86	GO:0002213: defense response to insect	5.20E-03
87	GO:0000266: mitochondrial fission	5.20E-03
88	GO:0006364: rRNA processing	5.25E-03
89	GO:0006813: potassium ion transport	5.25E-03
90	GO:0010224: response to UV-B	5.43E-03
91	GO:0010588: cotyledon vascular tissue pattern formation	5.68E-03
92	GO:0006108: malate metabolic process	5.68E-03
93	GO:0010229: inflorescence development	5.68E-03
94	GO:0034605: cellular response to heat	6.17E-03
95	GO:0010143: cutin biosynthetic process	6.17E-03
96	GO:0006541: glutamine metabolic process	6.17E-03
97	GO:0006446: regulation of translational initiation	6.17E-03
98	GO:0048367: shoot system development	6.40E-03
99	GO:0042343: indole glucosinolate metabolic process	6.67E-03
100	GO:0009969: xyloglucan biosynthetic process	6.67E-03
101	GO:0009225: nucleotide-sugar metabolic process	6.67E-03
102	GO:0034976: response to endoplasmic reticulum stress	7.20E-03
103	GO:0010025: wax biosynthetic process	7.20E-03
104	GO:0080147: root hair cell development	7.74E-03
105	GO:0051302: regulation of cell division	8.29E-03
106	GO:0051260: protein homooligomerization	8.85E-03
107	GO:0016226: iron-sulfur cluster assembly	9.43E-03
108	GO:0071215: cellular response to abscisic acid stimulus	1.00E-02
109	GO:0009625: response to insect	1.00E-02
110	GO:0006012: galactose metabolic process	1.00E-02
111	GO:0010584: pollen exine formation	1.06E-02
112	GO:0009790: embryo development	1.09E-02
113	GO:0070417: cellular response to cold	1.13E-02
114	GO:0042391: regulation of membrane potential	1.19E-02
115	GO:0009734: auxin-activated signaling pathway	1.19E-02
116	GO:0010501: RNA secondary structure unwinding	1.19E-02
117	GO:0010051: xylem and phloem pattern formation	1.19E-02
118	GO:0006413: translational initiation	1.21E-02
119	GO:0045489: pectin biosynthetic process	1.25E-02
120	GO:0006885: regulation of pH	1.25E-02
121	GO:0010305: leaf vascular tissue pattern formation	1.25E-02
122	GO:0010150: leaf senescence	1.29E-02
123	GO:0048544: recognition of pollen	1.32E-02
124	GO:0048825: cotyledon development	1.39E-02
125	GO:0006468: protein phosphorylation	1.44E-02
126	GO:0016032: viral process	1.52E-02
127	GO:0019760: glucosinolate metabolic process	1.67E-02
128	GO:0006914: autophagy	1.67E-02
129	GO:0042128: nitrate assimilation	2.04E-02
130	GO:0055085: transmembrane transport	2.15E-02
131	GO:0009651: response to salt stress	2.24E-02
132	GO:0048481: plant ovule development	2.28E-02
133	GO:0010311: lateral root formation	2.36E-02
134	GO:0048767: root hair elongation	2.36E-02
135	GO:0010043: response to zinc ion	2.53E-02
136	GO:0046777: protein autophosphorylation	2.66E-02
137	GO:0045087: innate immune response	2.70E-02
138	GO:0006631: fatty acid metabolic process	3.05E-02
139	GO:0009640: photomorphogenesis	3.23E-02
140	GO:0009926: auxin polar transport	3.23E-02
141	GO:0051707: response to other organism	3.23E-02
142	GO:0009793: embryo development ending in seed dormancy	3.67E-02
143	GO:0006812: cation transport	3.80E-02
144	GO:0009846: pollen germination	3.80E-02
145	GO:0048364: root development	3.83E-02
146	GO:0006979: response to oxidative stress	3.88E-02
147	GO:0009809: lignin biosynthetic process	4.00E-02
148	GO:0009733: response to auxin	4.42E-02
149	GO:0006096: glycolytic process	4.50E-02
150	GO:0009620: response to fungus	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
2	GO:0098808: mRNA cap binding	0.00E+00
3	GO:0003876: AMP deaminase activity	0.00E+00
4	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
5	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
6	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
7	GO:0046424: ferulate 5-hydroxylase activity	0.00E+00
8	GO:0004049: anthranilate synthase activity	4.02E-06
9	GO:0004834: tryptophan synthase activity	1.75E-05
10	GO:0043295: glutathione binding	8.05E-05
11	GO:0008446: GDP-mannose 4,6-dehydratase activity	1.48E-04
12	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.48E-04
13	GO:2001147: camalexin binding	1.48E-04
14	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.48E-04
15	GO:2001227: quercitrin binding	1.48E-04
16	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.48E-04
17	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.48E-04
18	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	3.38E-04
19	GO:0045140: inositol phosphoceramide synthase activity	3.38E-04
20	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	3.38E-04
21	GO:0003958: NADPH-hemoprotein reductase activity	3.38E-04
22	GO:0070181: small ribosomal subunit rRNA binding	5.54E-04
23	GO:0016805: dipeptidase activity	5.54E-04
24	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	5.54E-04
25	GO:0004324: ferredoxin-NADP+ reductase activity	5.54E-04
26	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.67E-04
27	GO:0005506: iron ion binding	6.69E-04
28	GO:0050660: flavin adenine dinucleotide binding	7.64E-04
29	GO:0004449: isocitrate dehydrogenase (NAD+) activity	7.93E-04
30	GO:0016656: monodehydroascorbate reductase (NADH) activity	7.93E-04
31	GO:0043023: ribosomal large subunit binding	7.93E-04
32	GO:0005524: ATP binding	1.00E-03
33	GO:0004470: malic enzyme activity	1.05E-03
34	GO:0004031: aldehyde oxidase activity	1.05E-03
35	GO:0050302: indole-3-acetaldehyde oxidase activity	1.05E-03
36	GO:0010279: indole-3-acetic acid amido synthetase activity	1.05E-03
37	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.05E-03
38	GO:0030276: clathrin binding	1.05E-03
39	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.05E-03
40	GO:0016853: isomerase activity	1.13E-03
41	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.24E-03
42	GO:0008948: oxaloacetate decarboxylase activity	1.33E-03
43	GO:0004356: glutamate-ammonia ligase activity	1.33E-03
44	GO:0005507: copper ion binding	1.48E-03
45	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.63E-03
46	GO:0035252: UDP-xylosyltransferase activity	1.63E-03
47	GO:0048040: UDP-glucuronate decarboxylase activity	1.63E-03
48	GO:0102391: decanoate--CoA ligase activity	1.96E-03
49	GO:0004656: procollagen-proline 4-dioxygenase activity	1.96E-03
50	GO:0005242: inward rectifier potassium channel activity	1.96E-03
51	GO:0070403: NAD+ binding	1.96E-03
52	GO:0004467: long-chain fatty acid-CoA ligase activity	2.30E-03
53	GO:0008235: metalloexopeptidase activity	2.30E-03
54	GO:0004034: aldose 1-epimerase activity	2.66E-03
55	GO:0043022: ribosome binding	2.66E-03
56	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.77E-03
57	GO:0030145: manganese ion binding	2.77E-03
58	GO:0003678: DNA helicase activity	3.44E-03
59	GO:0004364: glutathione transferase activity	3.75E-03
60	GO:0030955: potassium ion binding	3.86E-03
61	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.86E-03
62	GO:0004743: pyruvate kinase activity	3.86E-03
63	GO:0004713: protein tyrosine kinase activity	4.29E-03
64	GO:0001054: RNA polymerase I activity	4.73E-03
65	GO:0004177: aminopeptidase activity	4.73E-03
66	GO:0010329: auxin efflux transmembrane transporter activity	5.68E-03
67	GO:0004022: alcohol dehydrogenase (NAD) activity	5.68E-03
68	GO:0004725: protein tyrosine phosphatase activity	7.20E-03
69	GO:0016746: transferase activity, transferring acyl groups	7.69E-03
70	GO:0051536: iron-sulfur cluster binding	7.74E-03
71	GO:0031418: L-ascorbic acid binding	7.74E-03
72	GO:0043130: ubiquitin binding	7.74E-03
73	GO:0008026: ATP-dependent helicase activity	7.91E-03
74	GO:0043424: protein histidine kinase binding	8.29E-03
75	GO:0051087: chaperone binding	8.29E-03
76	GO:0003756: protein disulfide isomerase activity	1.06E-02
77	GO:0030551: cyclic nucleotide binding	1.19E-02
78	GO:0005451: monovalent cation:proton antiporter activity	1.19E-02
79	GO:0015299: solute:proton antiporter activity	1.32E-02
80	GO:0010181: FMN binding	1.32E-02
81	GO:0016301: kinase activity	1.39E-02
82	GO:0003743: translation initiation factor activity	1.51E-02
83	GO:0015385: sodium:proton antiporter activity	1.59E-02
84	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.65E-02
85	GO:0016791: phosphatase activity	1.67E-02
86	GO:0004672: protein kinase activity	1.88E-02
87	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.04E-02
88	GO:0020037: heme binding	2.10E-02
89	GO:0004721: phosphoprotein phosphatase activity	2.12E-02
90	GO:0004004: ATP-dependent RNA helicase activity	2.12E-02
91	GO:0004683: calmodulin-dependent protein kinase activity	2.12E-02
92	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.20E-02
93	GO:0019825: oxygen binding	2.48E-02
94	GO:0004497: monooxygenase activity	2.49E-02
95	GO:0050897: cobalt ion binding	2.53E-02
96	GO:0005516: calmodulin binding	2.66E-02
97	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.70E-02
98	GO:0008422: beta-glucosidase activity	2.87E-02
99	GO:0051539: 4 iron, 4 sulfur cluster binding	2.96E-02
100	GO:0050661: NADP binding	2.96E-02
101	GO:0051537: 2 iron, 2 sulfur cluster binding	3.42E-02
102	GO:0005198: structural molecule activity	3.51E-02
103	GO:0003924: GTPase activity	3.67E-02
104	GO:0051287: NAD binding	3.71E-02
105	GO:0009055: electron carrier activity	3.93E-02
106	GO:0005515: protein binding	4.11E-02
107	GO:0004674: protein serine/threonine kinase activity	4.22E-02
108	GO:0015171: amino acid transmembrane transporter activity	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0008305: integrin complex	0.00E+00
2	GO:0019034: viral replication complex	0.00E+00
3	GO:0005829: cytosol	6.09E-12
4	GO:0005783: endoplasmic reticulum	3.20E-08
5	GO:0030687: preribosome, large subunit precursor	8.82E-07
6	GO:0045334: clathrin-coated endocytic vesicle	1.48E-04
7	GO:0045252: oxoglutarate dehydrogenase complex	1.48E-04
8	GO:0009506: plasmodesma	1.48E-04
9	GO:0034245: mitochondrial DNA-directed RNA polymerase complex	1.48E-04
10	GO:0009925: basal plasma membrane	3.38E-04
11	GO:0005950: anthranilate synthase complex	3.38E-04
12	GO:0005886: plasma membrane	7.24E-04
13	GO:0045177: apical part of cell	7.93E-04
14	GO:0005774: vacuolar membrane	8.05E-04
15	GO:0005618: cell wall	1.11E-03
16	GO:0030126: COPI vesicle coat	1.33E-03
17	GO:0016282: eukaryotic 43S preinitiation complex	1.63E-03
18	GO:0016020: membrane	1.64E-03
19	GO:0005730: nucleolus	1.95E-03
20	GO:0033290: eukaryotic 48S preinitiation complex	1.96E-03
21	GO:0034399: nuclear periphery	2.66E-03
22	GO:0005736: DNA-directed RNA polymerase I complex	3.44E-03
23	GO:0031307: integral component of mitochondrial outer membrane	5.20E-03
24	GO:0032040: small-subunit processome	5.20E-03
25	GO:0043234: protein complex	7.20E-03
26	GO:0016021: integral component of membrane	1.28E-02
27	GO:0009504: cell plate	1.39E-02
28	GO:0032580: Golgi cisterna membrane	1.67E-02
29	GO:0005773: vacuole	1.81E-02
30	GO:0005788: endoplasmic reticulum lumen	1.97E-02
31	GO:0009570: chloroplast stroma	2.69E-02
32	GO:0005802: trans-Golgi network	2.87E-02
33	GO:0043231: intracellular membrane-bounded organelle	4.04E-02
34	GO:0005834: heterotrimeric G-protein complex	4.71E-02