GO Enrichment Analysis of Co-expressed Genes with
AT3G18890
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0017038: protein import | 0.00E+00 |
| 4 | GO:0046486: glycerolipid metabolic process | 0.00E+00 |
| 5 | GO:0015995: chlorophyll biosynthetic process | 5.64E-08 |
| 6 | GO:0015979: photosynthesis | 1.56E-07 |
| 7 | GO:0046168: glycerol-3-phosphate catabolic process | 1.76E-06 |
| 8 | GO:0090391: granum assembly | 1.76E-06 |
| 9 | GO:0006072: glycerol-3-phosphate metabolic process | 4.19E-06 |
| 10 | GO:1901259: chloroplast rRNA processing | 2.87E-05 |
| 11 | GO:0009772: photosynthetic electron transport in photosystem II | 3.89E-05 |
| 12 | GO:0010196: nonphotochemical quenching | 3.89E-05 |
| 13 | GO:0032544: plastid translation | 6.46E-05 |
| 14 | GO:0010027: thylakoid membrane organization | 6.62E-05 |
| 15 | GO:0042371: vitamin K biosynthetic process | 9.33E-05 |
| 16 | GO:0034337: RNA folding | 9.33E-05 |
| 17 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.59E-04 |
| 18 | GO:0006650: glycerophospholipid metabolic process | 2.20E-04 |
| 19 | GO:0008616: queuosine biosynthetic process | 2.20E-04 |
| 20 | GO:0009658: chloroplast organization | 2.26E-04 |
| 21 | GO:0006013: mannose metabolic process | 3.67E-04 |
| 22 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 3.67E-04 |
| 23 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 4.25E-04 |
| 24 | GO:0006412: translation | 4.52E-04 |
| 25 | GO:0010239: chloroplast mRNA processing | 5.28E-04 |
| 26 | GO:1901332: negative regulation of lateral root development | 5.28E-04 |
| 27 | GO:0045017: glycerolipid biosynthetic process | 5.28E-04 |
| 28 | GO:0009413: response to flooding | 5.28E-04 |
| 29 | GO:0010109: regulation of photosynthesis | 7.02E-04 |
| 30 | GO:0009828: plant-type cell wall loosening | 8.55E-04 |
| 31 | GO:0009616: virus induced gene silencing | 8.88E-04 |
| 32 | GO:0010236: plastoquinone biosynthetic process | 8.88E-04 |
| 33 | GO:0045038: protein import into chloroplast thylakoid membrane | 8.88E-04 |
| 34 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.08E-03 |
| 35 | GO:0009627: systemic acquired resistance | 1.12E-03 |
| 36 | GO:0009735: response to cytokinin | 1.21E-03 |
| 37 | GO:0042372: phylloquinone biosynthetic process | 1.29E-03 |
| 38 | GO:0016246: RNA interference | 1.29E-03 |
| 39 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.51E-03 |
| 40 | GO:0048564: photosystem I assembly | 1.75E-03 |
| 41 | GO:0045292: mRNA cis splicing, via spliceosome | 1.75E-03 |
| 42 | GO:0006353: DNA-templated transcription, termination | 1.75E-03 |
| 43 | GO:0006605: protein targeting | 1.75E-03 |
| 44 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.20E-03 |
| 45 | GO:0000373: Group II intron splicing | 2.25E-03 |
| 46 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.52E-03 |
| 47 | GO:0010267: production of ta-siRNAs involved in RNA interference | 2.52E-03 |
| 48 | GO:0009664: plant-type cell wall organization | 2.63E-03 |
| 49 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.80E-03 |
| 50 | GO:0030422: production of siRNA involved in RNA interference | 2.80E-03 |
| 51 | GO:0016441: posttranscriptional gene silencing | 2.80E-03 |
| 52 | GO:0006949: syncytium formation | 2.80E-03 |
| 53 | GO:0009773: photosynthetic electron transport in photosystem I | 3.09E-03 |
| 54 | GO:0048467: gynoecium development | 4.01E-03 |
| 55 | GO:0010143: cutin biosynthetic process | 4.01E-03 |
| 56 | GO:0048440: carpel development | 4.01E-03 |
| 57 | GO:0051017: actin filament bundle assembly | 5.01E-03 |
| 58 | GO:0042744: hydrogen peroxide catabolic process | 5.68E-03 |
| 59 | GO:0009790: embryo development | 5.82E-03 |
| 60 | GO:0030245: cellulose catabolic process | 6.09E-03 |
| 61 | GO:0009451: RNA modification | 7.04E-03 |
| 62 | GO:0042335: cuticle development | 7.65E-03 |
| 63 | GO:0080022: primary root development | 7.65E-03 |
| 64 | GO:0009739: response to gibberellin | 7.69E-03 |
| 65 | GO:0009646: response to absence of light | 8.47E-03 |
| 66 | GO:0048544: recognition of pollen | 8.47E-03 |
| 67 | GO:0015986: ATP synthesis coupled proton transport | 8.47E-03 |
| 68 | GO:0008654: phospholipid biosynthetic process | 8.90E-03 |
| 69 | GO:0000302: response to reactive oxygen species | 9.33E-03 |
| 70 | GO:0031047: gene silencing by RNA | 9.78E-03 |
| 71 | GO:0010090: trichome morphogenesis | 1.02E-02 |
| 72 | GO:0009826: unidimensional cell growth | 1.03E-02 |
| 73 | GO:0051607: defense response to virus | 1.16E-02 |
| 74 | GO:0009817: defense response to fungus, incompatible interaction | 1.46E-02 |
| 75 | GO:0010311: lateral root formation | 1.51E-02 |
| 76 | GO:0016310: phosphorylation | 1.57E-02 |
| 77 | GO:0045454: cell redox homeostasis | 1.59E-02 |
| 78 | GO:0007568: aging | 1.62E-02 |
| 79 | GO:0042742: defense response to bacterium | 1.75E-02 |
| 80 | GO:0034599: cellular response to oxidative stress | 1.78E-02 |
| 81 | GO:0010114: response to red light | 2.07E-02 |
| 82 | GO:0006855: drug transmembrane transport | 2.31E-02 |
| 83 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.62E-02 |
| 84 | GO:0005975: carbohydrate metabolic process | 2.95E-02 |
| 85 | GO:0009740: gibberellic acid mediated signaling pathway | 3.15E-02 |
| 86 | GO:0009058: biosynthetic process | 4.00E-02 |
| 87 | GO:0007623: circadian rhythm | 4.84E-02 |
| 88 | GO:0045490: pectin catabolic process | 4.84E-02 |
| 89 | GO:0009793: embryo development ending in seed dormancy | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0047661: amino-acid racemase activity | 0.00E+00 |
| 3 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 4 | GO:0005048: signal sequence binding | 0.00E+00 |
| 5 | GO:0016851: magnesium chelatase activity | 7.28E-09 |
| 6 | GO:0019843: rRNA binding | 1.04E-07 |
| 7 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 1.76E-06 |
| 8 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.01E-05 |
| 9 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 9.33E-05 |
| 10 | GO:0004856: xylulokinase activity | 9.33E-05 |
| 11 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 9.33E-05 |
| 12 | GO:0008479: queuine tRNA-ribosyltransferase activity | 2.20E-04 |
| 13 | GO:0016630: protochlorophyllide reductase activity | 2.20E-04 |
| 14 | GO:0005528: FK506 binding | 2.93E-04 |
| 15 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 3.67E-04 |
| 16 | GO:0043023: ribosomal large subunit binding | 5.28E-04 |
| 17 | GO:0004659: prenyltransferase activity | 7.02E-04 |
| 18 | GO:0003735: structural constituent of ribosome | 7.62E-04 |
| 19 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 8.88E-04 |
| 20 | GO:0004040: amidase activity | 8.88E-04 |
| 21 | GO:0003959: NADPH dehydrogenase activity | 8.88E-04 |
| 22 | GO:0004130: cytochrome-c peroxidase activity | 1.08E-03 |
| 23 | GO:0003968: RNA-directed 5'-3' RNA polymerase activity | 1.08E-03 |
| 24 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.08E-03 |
| 25 | GO:0003723: RNA binding | 1.19E-03 |
| 26 | GO:0004559: alpha-mannosidase activity | 1.29E-03 |
| 27 | GO:0008312: 7S RNA binding | 1.75E-03 |
| 28 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 1.75E-03 |
| 29 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.45E-03 |
| 30 | GO:0051287: NAD binding | 2.54E-03 |
| 31 | GO:0008266: poly(U) RNA binding | 4.01E-03 |
| 32 | GO:0003887: DNA-directed DNA polymerase activity | 4.67E-03 |
| 33 | GO:0030570: pectate lyase activity | 6.47E-03 |
| 34 | GO:0008810: cellulase activity | 6.47E-03 |
| 35 | GO:0003729: mRNA binding | 7.39E-03 |
| 36 | GO:0008080: N-acetyltransferase activity | 8.06E-03 |
| 37 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 8.06E-03 |
| 38 | GO:0004518: nuclease activity | 9.78E-03 |
| 39 | GO:0051015: actin filament binding | 1.02E-02 |
| 40 | GO:0016791: phosphatase activity | 1.07E-02 |
| 41 | GO:0004601: peroxidase activity | 1.07E-02 |
| 42 | GO:0008483: transaminase activity | 1.11E-02 |
| 43 | GO:0008236: serine-type peptidase activity | 1.41E-02 |
| 44 | GO:0004185: serine-type carboxypeptidase activity | 2.07E-02 |
| 45 | GO:0004519: endonuclease activity | 2.13E-02 |
| 46 | GO:0043621: protein self-association | 2.18E-02 |
| 47 | GO:0016887: ATPase activity | 3.03E-02 |
| 48 | GO:0016746: transferase activity, transferring acyl groups | 3.35E-02 |
| 49 | GO:0005524: ATP binding | 3.37E-02 |
| 50 | GO:0008026: ATP-dependent helicase activity | 3.42E-02 |
| 51 | GO:0016829: lyase activity | 4.07E-02 |
| 52 | GO:0004252: serine-type endopeptidase activity | 4.15E-02 |
| 53 | GO:0030170: pyridoxal phosphate binding | 4.15E-02 |
| 54 | GO:0004674: protein serine/threonine kinase activity | 4.37E-02 |
| 55 | GO:0030246: carbohydrate binding | 4.65E-02 |
| 56 | GO:0005507: copper ion binding | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 3 | GO:0009570: chloroplast stroma | 5.16E-16 |
| 4 | GO:0009507: chloroplast | 2.12E-15 |
| 5 | GO:0009579: thylakoid | 2.11E-12 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 2.11E-11 |
| 7 | GO:0009534: chloroplast thylakoid | 5.32E-11 |
| 8 | GO:0010007: magnesium chelatase complex | 1.48E-09 |
| 9 | GO:0009941: chloroplast envelope | 2.45E-09 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 1.04E-07 |
| 11 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 4.19E-06 |
| 12 | GO:0031977: thylakoid lumen | 8.63E-06 |
| 13 | GO:0005840: ribosome | 2.94E-05 |
| 14 | GO:0005618: cell wall | 4.55E-05 |
| 15 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 9.33E-05 |
| 16 | GO:0009547: plastid ribosome | 9.33E-05 |
| 17 | GO:0080085: signal recognition particle, chloroplast targeting | 2.20E-04 |
| 18 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.08E-03 |
| 19 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.00E-03 |
| 20 | GO:0042644: chloroplast nucleoid | 2.25E-03 |
| 21 | GO:0032040: small-subunit processome | 3.38E-03 |
| 22 | GO:0000311: plastid large ribosomal subunit | 3.38E-03 |
| 23 | GO:0009508: plastid chromosome | 3.69E-03 |
| 24 | GO:0030095: chloroplast photosystem II | 4.01E-03 |
| 25 | GO:0016020: membrane | 4.37E-03 |
| 26 | GO:0009654: photosystem II oxygen evolving complex | 5.36E-03 |
| 27 | GO:0009536: plastid | 5.52E-03 |
| 28 | GO:0009505: plant-type cell wall | 5.70E-03 |
| 29 | GO:0015629: actin cytoskeleton | 6.47E-03 |
| 30 | GO:0009523: photosystem II | 8.90E-03 |
| 31 | GO:0019898: extrinsic component of membrane | 8.90E-03 |
| 32 | GO:0010319: stromule | 1.11E-02 |
| 33 | GO:0009295: nucleoid | 1.11E-02 |
| 34 | GO:0031969: chloroplast membrane | 1.32E-02 |
| 35 | GO:0043231: intracellular membrane-bounded organelle | 2.16E-02 |
| 36 | GO:0005856: cytoskeleton | 2.24E-02 |
| 37 | GO:0005576: extracellular region | 2.32E-02 |
| 38 | GO:0009706: chloroplast inner membrane | 3.28E-02 |
| 39 | GO:0010287: plastoglobule | 3.71E-02 |