Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G18440

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070070: proton-transporting V-type ATPase complex assembly0.00E+00
2GO:0000390: spliceosomal complex disassembly0.00E+00
3GO:0043171: peptide catabolic process0.00E+00
4GO:0060560: developmental growth involved in morphogenesis0.00E+00
5GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening0.00E+00
6GO:0010378: temperature compensation of the circadian clock0.00E+00
7GO:0048867: stem cell fate determination0.00E+00
8GO:0010730: negative regulation of hydrogen peroxide biosynthetic process0.00E+00
9GO:0009415: response to water8.68E-06
10GO:0009737: response to abscisic acid2.77E-05
11GO:0009409: response to cold9.30E-05
12GO:0000380: alternative mRNA splicing, via spliceosome9.88E-05
13GO:0042542: response to hydrogen peroxide2.32E-04
14GO:0098869: cellular oxidant detoxification2.54E-04
15GO:0007623: circadian rhythm2.99E-04
16GO:1990641: response to iron ion starvation3.11E-04
17GO:0009609: response to symbiotic bacterium3.11E-04
18GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.11E-04
19GO:1902265: abscisic acid homeostasis3.11E-04
20GO:0015812: gamma-aminobutyric acid transport3.11E-04
21GO:0032958: inositol phosphate biosynthetic process3.11E-04
22GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic3.11E-04
23GO:0009819: drought recovery3.21E-04
24GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay4.73E-04
25GO:0009970: cellular response to sulfate starvation6.53E-04
26GO:0006995: cellular response to nitrogen starvation6.53E-04
27GO:0006611: protein export from nucleus6.81E-04
28GO:0030259: lipid glycosylation6.81E-04
29GO:0006101: citrate metabolic process6.81E-04
30GO:0018026: peptidyl-lysine monomethylation6.81E-04
31GO:0030003: cellular cation homeostasis6.81E-04
32GO:0045948: positive regulation of translational initiation6.81E-04
33GO:0010353: response to trehalose6.81E-04
34GO:0015914: phospholipid transport6.81E-04
35GO:0006970: response to osmotic stress7.58E-04
36GO:0018298: protein-chromophore linkage9.37E-04
37GO:0006811: ion transport1.06E-03
38GO:0000055: ribosomal large subunit export from nucleus1.10E-03
39GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.10E-03
40GO:0042256: mature ribosome assembly1.10E-03
41GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process1.10E-03
42GO:0009663: plasmodesma organization1.10E-03
43GO:0042344: indole glucosinolate catabolic process1.10E-03
44GO:0006954: inflammatory response1.10E-03
45GO:0042780: tRNA 3'-end processing1.10E-03
46GO:0009631: cold acclimation1.12E-03
47GO:0009637: response to blue light1.26E-03
48GO:0009651: response to salt stress1.42E-03
49GO:0006020: inositol metabolic process1.58E-03
50GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly1.58E-03
51GO:0010601: positive regulation of auxin biosynthetic process1.58E-03
52GO:0015749: monosaccharide transport1.58E-03
53GO:0051601: exocyst localization1.58E-03
54GO:1901332: negative regulation of lateral root development1.58E-03
55GO:0006882: cellular zinc ion homeostasis1.58E-03
56GO:0006874: cellular calcium ion homeostasis1.66E-03
57GO:0009768: photosynthesis, light harvesting in photosystem I1.66E-03
58GO:0009269: response to desiccation1.82E-03
59GO:0009687: abscisic acid metabolic process2.12E-03
60GO:0009765: photosynthesis, light harvesting2.12E-03
61GO:0000381: regulation of alternative mRNA splicing, via spliceosome2.12E-03
62GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain2.12E-03
63GO:0006878: cellular copper ion homeostasis2.12E-03
64GO:0006646: phosphatidylethanolamine biosynthetic process2.12E-03
65GO:0007029: endoplasmic reticulum organization2.71E-03
66GO:0048578: positive regulation of long-day photoperiodism, flowering2.71E-03
67GO:0006656: phosphatidylcholine biosynthetic process2.71E-03
68GO:0043097: pyrimidine nucleoside salvage2.71E-03
69GO:0010501: RNA secondary structure unwinding2.76E-03
70GO:0010051: xylem and phloem pattern formation2.76E-03
71GO:0042752: regulation of circadian rhythm3.20E-03
72GO:0045040: protein import into mitochondrial outer membrane3.35E-03
73GO:0006206: pyrimidine nucleobase metabolic process3.35E-03
74GO:0007035: vacuolar acidification3.35E-03
75GO:0000741: karyogamy3.35E-03
76GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity4.03E-03
77GO:0045926: negative regulation of growth4.03E-03
78GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.03E-03
79GO:0010555: response to mannitol4.03E-03
80GO:0010286: heat acclimation4.73E-03
81GO:0009610: response to symbiotic fungus4.76E-03
82GO:0048437: floral organ development4.76E-03
83GO:0009645: response to low light intensity stimulus4.76E-03
84GO:0009769: photosynthesis, light harvesting in photosystem II4.76E-03
85GO:1902074: response to salt4.76E-03
86GO:0010038: response to metal ion4.76E-03
87GO:0009738: abscisic acid-activated signaling pathway4.96E-03
88GO:0009416: response to light stimulus5.26E-03
89GO:0009061: anaerobic respiration5.53E-03
90GO:0010078: maintenance of root meristem identity5.53E-03
91GO:0032508: DNA duplex unwinding5.53E-03
92GO:0006491: N-glycan processing5.53E-03
93GO:0006875: cellular metal ion homeostasis5.53E-03
94GO:0006102: isocitrate metabolic process5.53E-03
95GO:0009414: response to water deprivation5.54E-03
96GO:0006886: intracellular protein transport5.91E-03
97GO:0048573: photoperiodism, flowering6.26E-03
98GO:0006950: response to stress6.26E-03
99GO:0071482: cellular response to light stimulus6.33E-03
100GO:0060321: acceptance of pollen6.33E-03
101GO:0006367: transcription initiation from RNA polymerase II promoter6.33E-03
102GO:0001510: RNA methylation6.33E-03
103GO:0009817: defense response to fungus, incompatible interaction6.93E-03
104GO:0046916: cellular transition metal ion homeostasis7.19E-03
105GO:0016036: cellular response to phosphate starvation7.28E-03
106GO:0010218: response to far red light7.65E-03
107GO:0010119: regulation of stomatal movement8.02E-03
108GO:0010043: response to zinc ion8.02E-03
109GO:0005982: starch metabolic process8.07E-03
110GO:0090332: stomatal closure8.07E-03
111GO:2000280: regulation of root development8.07E-03
112GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway8.07E-03
113GO:0008202: steroid metabolic process8.07E-03
114GO:0045087: innate immune response8.80E-03
115GO:0007165: signal transduction8.90E-03
116GO:0010215: cellulose microfibril organization9.00E-03
117GO:0006816: calcium ion transport9.96E-03
118GO:0009682: induced systemic resistance9.96E-03
119GO:0052544: defense response by callose deposition in cell wall9.96E-03
120GO:0010152: pollen maturation1.10E-02
121GO:0005983: starch catabolic process1.10E-02
122GO:0016925: protein sumoylation1.10E-02
123GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.20E-02
124GO:2000012: regulation of auxin polar transport1.20E-02
125GO:0010628: positive regulation of gene expression1.20E-02
126GO:0006626: protein targeting to mitochondrion1.20E-02
127GO:0010102: lateral root morphogenesis1.20E-02
128GO:0008643: carbohydrate transport1.23E-02
129GO:0007034: vacuolar transport1.31E-02
130GO:0010030: positive regulation of seed germination1.42E-02
131GO:0009846: pollen germination1.43E-02
132GO:0006406: mRNA export from nucleus1.65E-02
133GO:0016575: histone deacetylation1.77E-02
134GO:0009695: jasmonic acid biosynthetic process1.77E-02
135GO:0010073: meristem maintenance1.77E-02
136GO:0006825: copper ion transport1.77E-02
137GO:0080167: response to karrikin1.83E-02
138GO:0003333: amino acid transmembrane transport1.89E-02
139GO:0016192: vesicle-mediated transport1.95E-02
140GO:0035556: intracellular signal transduction2.00E-02
141GO:0009553: embryo sac development2.13E-02
142GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.14E-02
143GO:0071215: cellular response to abscisic acid stimulus2.14E-02
144GO:0006396: RNA processing2.26E-02
145GO:0010089: xylem development2.27E-02
146GO:0010214: seed coat development2.27E-02
147GO:0009561: megagametogenesis2.27E-02
148GO:0009306: protein secretion2.27E-02
149GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.41E-02
150GO:0042147: retrograde transport, endosome to Golgi2.41E-02
151GO:0015991: ATP hydrolysis coupled proton transport2.55E-02
152GO:0042631: cellular response to water deprivation2.55E-02
153GO:0000226: microtubule cytoskeleton organization2.55E-02
154GO:0080022: primary root development2.55E-02
155GO:0042391: regulation of membrane potential2.55E-02
156GO:0000413: protein peptidyl-prolyl isomerization2.55E-02
157GO:0010197: polar nucleus fusion2.68E-02
158GO:0046323: glucose import2.68E-02
159GO:0048544: recognition of pollen2.83E-02
160GO:0015986: ATP synthesis coupled proton transport2.83E-02
161GO:0006814: sodium ion transport2.83E-02
162GO:0009791: post-embryonic development2.97E-02
163GO:0009749: response to glucose2.97E-02
164GO:0009845: seed germination2.97E-02
165GO:0008654: phospholipid biosynthetic process2.97E-02
166GO:0009556: microsporogenesis2.97E-02
167GO:0042744: hydrogen peroxide catabolic process3.12E-02
168GO:0000302: response to reactive oxygen species3.12E-02
169GO:0006891: intra-Golgi vesicle-mediated transport3.12E-02
170GO:0006635: fatty acid beta-oxidation3.12E-02
171GO:1901657: glycosyl compound metabolic process3.42E-02
172GO:0016125: sterol metabolic process3.58E-02
173GO:0019760: glucosinolate metabolic process3.58E-02
174GO:0006914: autophagy3.58E-02
175GO:0006904: vesicle docking involved in exocytosis3.73E-02
176GO:0046686: response to cadmium ion3.75E-02
177GO:0016126: sterol biosynthetic process4.05E-02
178GO:0009911: positive regulation of flower development4.05E-02
179GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.22E-02
180GO:0010029: regulation of seed germination4.22E-02
181GO:0010468: regulation of gene expression4.50E-02
182GO:0009617: response to bacterium4.50E-02
183GO:0016049: cell growth4.72E-02
184GO:0016567: protein ubiquitination4.77E-02
185GO:0048481: plant ovule development4.89E-02
186GO:0030244: cellulose biosynthetic process4.89E-02
RankGO TermAdjusted P value
1GO:0047668: amygdalin beta-glucosidase activity0.00E+00
2GO:1990446: U1 snRNP binding0.00E+00
3GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
4GO:0005272: sodium channel activity0.00E+00
5GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
6GO:0080082: esculin beta-glucosidase activity0.00E+00
7GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
8GO:0004567: beta-mannosidase activity0.00E+00
9GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
10GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
11GO:0019829: cation-transporting ATPase activity1.57E-05
12GO:0004096: catalase activity1.57E-05
13GO:0005515: protein binding2.38E-04
14GO:0016906: sterol 3-beta-glucosyltransferase activity3.11E-04
15GO:0009679: hexose:proton symporter activity3.11E-04
16GO:0035671: enone reductase activity3.11E-04
17GO:0000829: inositol heptakisphosphate kinase activity3.11E-04
18GO:0010013: N-1-naphthylphthalamic acid binding3.11E-04
19GO:0080079: cellobiose glucosidase activity3.11E-04
20GO:0102203: brassicasterol glucosyltransferase activity3.11E-04
21GO:0102202: soladodine glucosyltransferase activity3.11E-04
22GO:0050521: alpha-glucan, water dikinase activity3.11E-04
23GO:0008692: 3-hydroxybutyryl-CoA epimerase activity3.11E-04
24GO:0046870: cadmium ion binding3.11E-04
25GO:0016274: protein-arginine N-methyltransferase activity3.11E-04
26GO:0070006: metalloaminopeptidase activity3.11E-04
27GO:0000828: inositol hexakisphosphate kinase activity3.11E-04
28GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.11E-04
29GO:0015185: gamma-aminobutyric acid transmembrane transporter activity3.11E-04
30GO:0033857: diphosphoinositol-pentakisphosphate kinase activity3.11E-04
31GO:0004525: ribonuclease III activity3.21E-04
32GO:0004609: phosphatidylserine decarboxylase activity6.81E-04
33GO:0003994: aconitate hydratase activity6.81E-04
34GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity6.81E-04
35GO:0004839: ubiquitin activating enzyme activity6.81E-04
36GO:0015180: L-alanine transmembrane transporter activity6.81E-04
37GO:0001047: core promoter binding6.81E-04
38GO:0032791: lead ion binding6.81E-04
39GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters6.81E-04
40GO:0019948: SUMO activating enzyme activity1.10E-03
41GO:0017150: tRNA dihydrouridine synthase activity1.10E-03
42GO:0042781: 3'-tRNA processing endoribonuclease activity1.10E-03
43GO:0031409: pigment binding1.36E-03
44GO:0015189: L-lysine transmembrane transporter activity1.58E-03
45GO:0048027: mRNA 5'-UTR binding1.58E-03
46GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity1.58E-03
47GO:0015181: arginine transmembrane transporter activity1.58E-03
48GO:0043023: ribosomal large subunit binding1.58E-03
49GO:0004165: dodecenoyl-CoA delta-isomerase activity1.58E-03
50GO:0004300: enoyl-CoA hydratase activity1.58E-03
51GO:0008526: phosphatidylinositol transporter activity2.12E-03
52GO:0005313: L-glutamate transmembrane transporter activity2.12E-03
53GO:0005253: anion channel activity2.12E-03
54GO:0042277: peptide binding2.12E-03
55GO:0016279: protein-lysine N-methyltransferase activity2.12E-03
56GO:0010294: abscisic acid glucosyltransferase activity2.71E-03
57GO:0015145: monosaccharide transmembrane transporter activity2.71E-03
58GO:0008641: small protein activating enzyme activity2.71E-03
59GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.71E-03
60GO:0005247: voltage-gated chloride channel activity3.35E-03
61GO:2001070: starch binding3.35E-03
62GO:0004629: phospholipase C activity3.35E-03
63GO:0019137: thioglucosidase activity3.35E-03
64GO:0051117: ATPase binding3.35E-03
65GO:0015562: efflux transmembrane transporter activity3.35E-03
66GO:0000293: ferric-chelate reductase activity3.35E-03
67GO:0031369: translation initiation factor binding3.35E-03
68GO:0004849: uridine kinase activity4.03E-03
69GO:0070300: phosphatidic acid binding4.03E-03
70GO:0003730: mRNA 3'-UTR binding4.03E-03
71GO:0003950: NAD+ ADP-ribosyltransferase activity4.03E-03
72GO:0004602: glutathione peroxidase activity4.03E-03
73GO:0004435: phosphatidylinositol phospholipase C activity4.03E-03
74GO:0005261: cation channel activity4.03E-03
75GO:0009881: photoreceptor activity4.76E-03
76GO:0016168: chlorophyll binding5.62E-03
77GO:0102483: scopolin beta-glucosidase activity6.26E-03
78GO:0005267: potassium channel activity6.33E-03
79GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.33E-03
80GO:0005375: copper ion transmembrane transporter activity6.33E-03
81GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity7.19E-03
82GO:0050897: cobalt ion binding8.02E-03
83GO:0003697: single-stranded DNA binding8.80E-03
84GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity9.00E-03
85GO:0015020: glucuronosyltransferase activity9.00E-03
86GO:0008422: beta-glucosidase activity9.61E-03
87GO:0046961: proton-transporting ATPase activity, rotational mechanism9.96E-03
88GO:0004177: aminopeptidase activity9.96E-03
89GO:0005262: calcium channel activity1.20E-02
90GO:0005388: calcium-transporting ATPase activity1.20E-02
91GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.20E-02
92GO:0003729: mRNA binding1.26E-02
93GO:0031624: ubiquitin conjugating enzyme binding1.31E-02
94GO:0030552: cAMP binding1.42E-02
95GO:0030553: cGMP binding1.42E-02
96GO:0004970: ionotropic glutamate receptor activity1.42E-02
97GO:0005217: intracellular ligand-gated ion channel activity1.42E-02
98GO:0004407: histone deacetylase activity1.65E-02
99GO:0043424: protein histidine kinase binding1.77E-02
100GO:0005216: ion channel activity1.77E-02
101GO:0008324: cation transmembrane transporter activity1.77E-02
102GO:0004707: MAP kinase activity1.89E-02
103GO:0019706: protein-cysteine S-palmitoyltransferase activity1.89E-02
104GO:0080043: quercetin 3-O-glucosyltransferase activity2.00E-02
105GO:0080044: quercetin 7-O-glucosyltransferase activity2.00E-02
106GO:0003727: single-stranded RNA binding2.27E-02
107GO:0008026: ATP-dependent helicase activity2.32E-02
108GO:0005249: voltage-gated potassium channel activity2.55E-02
109GO:0030551: cyclic nucleotide binding2.55E-02
110GO:0004722: protein serine/threonine phosphatase activity2.57E-02
111GO:0016301: kinase activity2.58E-02
112GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity2.68E-02
113GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.82E-02
114GO:0008565: protein transporter activity3.28E-02
115GO:0015144: carbohydrate transmembrane transporter activity3.28E-02
116GO:0015297: antiporter activity3.61E-02
117GO:0005351: sugar:proton symporter activity3.70E-02
118GO:0008375: acetylglucosaminyltransferase activity4.38E-02
119GO:0004004: ATP-dependent RNA helicase activity4.55E-02
120GO:0030247: polysaccharide binding4.55E-02
121GO:0005509: calcium ion binding4.60E-02
122GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.89E-02
RankGO TermAdjusted P value
1GO:0031981: nuclear lumen0.00E+00
2GO:0071008: U2-type post-mRNA release spliceosomal complex0.00E+00
3GO:0005777: peroxisome2.16E-05
4GO:0005886: plasma membrane2.50E-05
5GO:0012510: trans-Golgi network transport vesicle membrane3.11E-04
6GO:0035145: exon-exon junction complex6.81E-04
7GO:0032777: Piccolo NuA4 histone acetyltransferase complex6.81E-04
8GO:0043036: starch grain6.81E-04
9GO:0016021: integral component of membrane1.04E-03
10GO:0030076: light-harvesting complex1.22E-03
11GO:0005776: autophagosome2.12E-03
12GO:0016471: vacuolar proton-transporting V-type ATPase complex2.12E-03
13GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain2.71E-03
14GO:0009522: photosystem I3.20E-03
15GO:0010008: endosome membrane3.26E-03
16GO:0034707: chloride channel complex3.35E-03
17GO:0005851: eukaryotic translation initiation factor 2B complex3.35E-03
18GO:0009523: photosystem II3.43E-03
19GO:0005802: trans-Golgi network3.66E-03
20GO:0005794: Golgi apparatus3.82E-03
21GO:0016363: nuclear matrix4.03E-03
22GO:0000815: ESCRT III complex4.03E-03
23GO:0005783: endoplasmic reticulum4.51E-03
24GO:0030131: clathrin adaptor complex5.53E-03
25GO:0000307: cyclin-dependent protein kinase holoenzyme complex6.33E-03
26GO:0005742: mitochondrial outer membrane translocase complex6.33E-03
27GO:0031090: organelle membrane7.19E-03
28GO:0016604: nuclear body8.07E-03
29GO:0030125: clathrin vesicle coat9.00E-03
30GO:0005665: DNA-directed RNA polymerase II, core complex1.10E-02
31GO:0005795: Golgi stack1.42E-02
32GO:0031966: mitochondrial membrane1.43E-02
33GO:0005622: intracellular1.43E-02
34GO:0005618: cell wall1.43E-02
35GO:0005768: endosome1.49E-02
36GO:0005634: nucleus1.59E-02
37GO:0042651: thylakoid membrane1.77E-02
38GO:0005741: mitochondrial outer membrane1.89E-02
39GO:0005905: clathrin-coated pit1.89E-02
40GO:0031410: cytoplasmic vesicle2.01E-02
41GO:0005829: cytosol2.22E-02
42GO:0005744: mitochondrial inner membrane presequence translocase complex2.27E-02
43GO:0010287: plastoglobule2.60E-02
44GO:0009506: plasmodesma2.66E-02
45GO:0005654: nucleoplasm2.67E-02
46GO:0016020: membrane2.68E-02
47GO:0005773: vacuole2.75E-02
48GO:0031965: nuclear membrane2.97E-02
49GO:0000145: exocyst3.27E-02
50GO:0000932: P-body4.05E-02
51GO:0005887: integral component of plasma membrane4.34E-02
52GO:0009941: chloroplast envelope4.75E-02
53GO:0000151: ubiquitin ligase complex4.89E-02
Gene type



Gene DE type