co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G18050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0016553: base conversion or substitution editing	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	7.47E-07
6	GO:0015979: photosynthesis	4.20E-06
7	GO:0090391: granum assembly	1.48E-05
8	GO:0042335: cuticle development	1.56E-05
9	GO:0010206: photosystem II repair	1.60E-05
10	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.80E-05
11	GO:0016024: CDP-diacylglycerol biosynthetic process	4.50E-05
12	GO:0010027: thylakoid membrane organization	5.85E-05
13	GO:0015995: chlorophyll biosynthetic process	7.98E-05
14	GO:0009913: epidermal cell differentiation	1.36E-04
15	GO:0006655: phosphatidylglycerol biosynthetic process	1.36E-04
16	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.91E-04
17	GO:0010196: nonphotochemical quenching	2.42E-04
18	GO:0000481: maturation of 5S rRNA	3.02E-04
19	GO:0042371: vitamin K biosynthetic process	3.02E-04
20	GO:0090548: response to nitrate starvation	3.02E-04
21	GO:0034337: RNA folding	3.02E-04
22	GO:0071588: hydrogen peroxide mediated signaling pathway	3.02E-04
23	GO:0070509: calcium ion import	3.02E-04
24	GO:0007263: nitric oxide mediated signal transduction	3.02E-04
25	GO:0043489: RNA stabilization	3.02E-04
26	GO:1902025: nitrate import	3.02E-04
27	GO:0046620: regulation of organ growth	3.05E-04
28	GO:0006869: lipid transport	3.25E-04
29	GO:0032544: plastid translation	3.75E-04
30	GO:0009828: plant-type cell wall loosening	5.05E-04
31	GO:0010205: photoinhibition	5.34E-04
32	GO:0009733: response to auxin	6.49E-04
33	GO:0001736: establishment of planar polarity	6.60E-04
34	GO:0010024: phytochromobilin biosynthetic process	6.60E-04
35	GO:0043255: regulation of carbohydrate biosynthetic process	6.60E-04
36	GO:0006898: receptor-mediated endocytosis	6.60E-04
37	GO:0010541: acropetal auxin transport	6.60E-04
38	GO:0006006: glucose metabolic process	9.29E-04
39	GO:0010143: cutin biosynthetic process	1.04E-03
40	GO:0015714: phosphoenolpyruvate transport	1.07E-03
41	GO:0006788: heme oxidation	1.07E-03
42	GO:0006518: peptide metabolic process	1.07E-03
43	GO:0010160: formation of animal organ boundary	1.07E-03
44	GO:0016045: detection of bacterium	1.07E-03
45	GO:0015840: urea transport	1.07E-03
46	GO:0010359: regulation of anion channel activity	1.07E-03
47	GO:0080055: low-affinity nitrate transport	1.07E-03
48	GO:0009735: response to cytokinin	1.10E-03
49	GO:0006833: water transport	1.30E-03
50	GO:0006636: unsaturated fatty acid biosynthetic process	1.30E-03
51	GO:0009416: response to light stimulus	1.31E-03
52	GO:0005975: carbohydrate metabolic process	1.33E-03
53	GO:0051017: actin filament bundle assembly	1.44E-03
54	GO:0051513: regulation of monopolar cell growth	1.53E-03
55	GO:0071484: cellular response to light intensity	1.53E-03
56	GO:0051639: actin filament network formation	1.53E-03
57	GO:0080170: hydrogen peroxide transmembrane transport	1.53E-03
58	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.53E-03
59	GO:0009650: UV protection	1.53E-03
60	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.53E-03
61	GO:1901332: negative regulation of lateral root development	1.53E-03
62	GO:0009926: auxin polar transport	1.63E-03
63	GO:0016042: lipid catabolic process	1.67E-03
64	GO:0051764: actin crosslink formation	2.06E-03
65	GO:0006183: GTP biosynthetic process	2.06E-03
66	GO:0045727: positive regulation of translation	2.06E-03
67	GO:0030104: water homeostasis	2.06E-03
68	GO:0015713: phosphoglycerate transport	2.06E-03
69	GO:0009664: plant-type cell wall organization	2.18E-03
70	GO:0006564: L-serine biosynthetic process	2.63E-03
71	GO:0034220: ion transmembrane transport	2.64E-03
72	GO:0009958: positive gravitropism	2.84E-03
73	GO:0009658: chloroplast organization	2.87E-03
74	GO:0009409: response to cold	3.16E-03
75	GO:0009734: auxin-activated signaling pathway	3.22E-03
76	GO:0006751: glutathione catabolic process	3.24E-03
77	GO:0042549: photosystem II stabilization	3.24E-03
78	GO:0000470: maturation of LSU-rRNA	3.24E-03
79	GO:0060918: auxin transport	3.24E-03
80	GO:0010337: regulation of salicylic acid metabolic process	3.24E-03
81	GO:0010019: chloroplast-nucleus signaling pathway	3.90E-03
82	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.90E-03
83	GO:0080167: response to karrikin	3.98E-03
84	GO:0009395: phospholipid catabolic process	4.60E-03
85	GO:0009772: photosynthetic electron transport in photosystem II	4.60E-03
86	GO:1900056: negative regulation of leaf senescence	4.60E-03
87	GO:1900057: positive regulation of leaf senescence	4.60E-03
88	GO:0010444: guard mother cell differentiation	4.60E-03
89	GO:0032508: DNA duplex unwinding	5.35E-03
90	GO:0008610: lipid biosynthetic process	5.35E-03
91	GO:0030091: protein repair	5.35E-03
92	GO:0042255: ribosome assembly	5.35E-03
93	GO:0006353: DNA-templated transcription, termination	5.35E-03
94	GO:0006605: protein targeting	5.35E-03
95	GO:0009627: systemic acquired resistance	5.66E-03
96	GO:0006633: fatty acid biosynthetic process	6.64E-03
97	GO:0010311: lateral root formation	6.94E-03
98	GO:0009051: pentose-phosphate shunt, oxidative branch	6.95E-03
99	GO:0009245: lipid A biosynthetic process	6.95E-03
100	GO:0009631: cold acclimation	7.65E-03
101	GO:0009638: phototropism	7.80E-03
102	GO:0048829: root cap development	8.70E-03
103	GO:0006949: syncytium formation	8.70E-03
104	GO:0006032: chitin catabolic process	8.70E-03
105	GO:0018119: peptidyl-cysteine S-nitrosylation	9.63E-03
106	GO:0048765: root hair cell differentiation	9.63E-03
107	GO:0010015: root morphogenesis	9.63E-03
108	GO:0000038: very long-chain fatty acid metabolic process	9.63E-03
109	GO:0052544: defense response by callose deposition in cell wall	9.63E-03
110	GO:0006412: translation	1.01E-02
111	GO:0008361: regulation of cell size	1.06E-02
112	GO:0009718: anthocyanin-containing compound biosynthetic process	1.16E-02
113	GO:0009725: response to hormone	1.16E-02
114	GO:0010102: lateral root morphogenesis	1.16E-02
115	GO:0009785: blue light signaling pathway	1.16E-02
116	GO:0010628: positive regulation of gene expression	1.16E-02
117	GO:0006468: protein phosphorylation	1.20E-02
118	GO:0009826: unidimensional cell growth	1.25E-02
119	GO:0010540: basipetal auxin transport	1.26E-02
120	GO:0010207: photosystem II assembly	1.26E-02
121	GO:0019253: reductive pentose-phosphate cycle	1.26E-02
122	GO:0042254: ribosome biogenesis	1.34E-02
123	GO:0010030: positive regulation of seed germination	1.37E-02
124	GO:0010053: root epidermal cell differentiation	1.37E-02
125	GO:0009825: multidimensional cell growth	1.37E-02
126	GO:0010167: response to nitrate	1.37E-02
127	GO:0071732: cellular response to nitric oxide	1.37E-02
128	GO:0019762: glucosinolate catabolic process	1.48E-02
129	GO:0010025: wax biosynthetic process	1.48E-02
130	GO:0000027: ribosomal large subunit assembly	1.59E-02
131	GO:0071555: cell wall organization	1.65E-02
132	GO:0007017: microtubule-based process	1.71E-02
133	GO:0003333: amino acid transmembrane transport	1.82E-02
134	GO:0016998: cell wall macromolecule catabolic process	1.82E-02
135	GO:0048511: rhythmic process	1.82E-02
136	GO:0031408: oxylipin biosynthetic process	1.82E-02
137	GO:0009411: response to UV	2.07E-02
138	GO:0071369: cellular response to ethylene stimulus	2.07E-02
139	GO:0009624: response to nematode	2.09E-02
140	GO:0009306: protein secretion	2.20E-02
141	GO:0048443: stamen development	2.20E-02
142	GO:0006284: base-excision repair	2.20E-02
143	GO:0042127: regulation of cell proliferation	2.20E-02
144	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.33E-02
145	GO:0008033: tRNA processing	2.46E-02
146	GO:0000413: protein peptidyl-prolyl isomerization	2.46E-02
147	GO:0042631: cellular response to water deprivation	2.46E-02
148	GO:0042391: regulation of membrane potential	2.46E-02
149	GO:0080022: primary root development	2.46E-02
150	GO:0015986: ATP synthesis coupled proton transport	2.73E-02
151	GO:0042752: regulation of circadian rhythm	2.73E-02
152	GO:0048825: cotyledon development	2.87E-02
153	GO:0071554: cell wall organization or biogenesis	3.01E-02
154	GO:0000302: response to reactive oxygen species	3.01E-02
155	GO:0006810: transport	3.15E-02
156	GO:0032502: developmental process	3.16E-02
157	GO:0009630: gravitropism	3.16E-02
158	GO:0016032: viral process	3.16E-02
159	GO:0030163: protein catabolic process	3.31E-02
160	GO:0071281: cellular response to iron ion	3.31E-02
161	GO:0040008: regulation of growth	3.44E-02
162	GO:0009639: response to red or far red light	3.46E-02
163	GO:0045490: pectin catabolic process	3.61E-02
164	GO:0009739: response to gibberellin	4.03E-02
165	GO:0016311: dephosphorylation	4.56E-02
166	GO:0030244: cellulose biosynthetic process	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
8	GO:0019843: rRNA binding	5.70E-08
9	GO:0005528: FK506 binding	8.23E-08
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.77E-06
11	GO:0016851: magnesium chelatase activity	3.30E-05
12	GO:0016788: hydrolase activity, acting on ester bonds	1.13E-04
13	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.36E-04
14	GO:0052689: carboxylic ester hydrolase activity	2.23E-04
15	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	3.02E-04
16	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.02E-04
17	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	3.02E-04
18	GO:0045485: omega-6 fatty acid desaturase activity	3.02E-04
19	GO:0015200: methylammonium transmembrane transporter activity	3.02E-04
20	GO:0015250: water channel activity	6.32E-04
21	GO:0003839: gamma-glutamylcyclotransferase activity	6.60E-04
22	GO:0004617: phosphoglycerate dehydrogenase activity	6.60E-04
23	GO:0003938: IMP dehydrogenase activity	6.60E-04
24	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.60E-04
25	GO:0008289: lipid binding	8.11E-04
26	GO:0003735: structural constituent of ribosome	8.72E-04
27	GO:0004565: beta-galactosidase activity	9.29E-04
28	GO:0008266: poly(U) RNA binding	1.04E-03
29	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.07E-03
30	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.07E-03
31	GO:0050734: hydroxycinnamoyltransferase activity	1.07E-03
32	GO:0090729: toxin activity	1.07E-03
33	GO:0003993: acid phosphatase activity	1.25E-03
34	GO:0001872: (1->3)-beta-D-glucan binding	1.53E-03
35	GO:0042277: peptide binding	2.06E-03
36	GO:0004392: heme oxygenase (decyclizing) activity	2.06E-03
37	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.06E-03
38	GO:0015204: urea transmembrane transporter activity	2.06E-03
39	GO:0015120: phosphoglycerate transmembrane transporter activity	2.06E-03
40	GO:0010011: auxin binding	2.06E-03
41	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.06E-03
42	GO:0010328: auxin influx transmembrane transporter activity	2.06E-03
43	GO:0052793: pectin acetylesterase activity	2.06E-03
44	GO:0030570: pectate lyase activity	2.07E-03
45	GO:0008725: DNA-3-methyladenine glycosylase activity	2.63E-03
46	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.24E-03
47	GO:0008519: ammonium transmembrane transporter activity	3.24E-03
48	GO:0004629: phospholipase C activity	3.24E-03
49	GO:0004130: cytochrome-c peroxidase activity	3.24E-03
50	GO:0031177: phosphopantetheine binding	3.24E-03
51	GO:0016688: L-ascorbate peroxidase activity	3.24E-03
52	GO:0016746: transferase activity, transferring acyl groups	3.88E-03
53	GO:0005242: inward rectifier potassium channel activity	3.90E-03
54	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.90E-03
55	GO:0000035: acyl binding	3.90E-03
56	GO:0005261: cation channel activity	3.90E-03
57	GO:0004435: phosphatidylinositol phospholipase C activity	3.90E-03
58	GO:0051015: actin filament binding	3.99E-03
59	GO:0016791: phosphatase activity	4.25E-03
60	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	5.35E-03
61	GO:0016829: lyase activity	5.49E-03
62	GO:0004871: signal transducer activity	5.63E-03
63	GO:0030247: polysaccharide binding	5.97E-03
64	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.13E-03
65	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.85E-03
66	GO:0004568: chitinase activity	8.70E-03
67	GO:0004674: protein serine/threonine kinase activity	8.80E-03
68	GO:0050661: NADP binding	9.56E-03
69	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.02E-02
70	GO:0031072: heat shock protein binding	1.16E-02
71	GO:0005262: calcium channel activity	1.16E-02
72	GO:0010329: auxin efflux transmembrane transporter activity	1.16E-02
73	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.26E-02
74	GO:0051287: NAD binding	1.31E-02
75	GO:0030552: cAMP binding	1.37E-02
76	GO:0030553: cGMP binding	1.37E-02
77	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.48E-02
78	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.48E-02
79	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.48E-02
80	GO:0003690: double-stranded DNA binding	1.52E-02
81	GO:0005216: ion channel activity	1.71E-02
82	GO:0004176: ATP-dependent peptidase activity	1.82E-02
83	GO:0004650: polygalacturonase activity	1.91E-02
84	GO:0003727: single-stranded RNA binding	2.20E-02
85	GO:0003756: protein disulfide isomerase activity	2.20E-02
86	GO:0004722: protein serine/threonine phosphatase activity	2.42E-02
87	GO:0030551: cyclic nucleotide binding	2.46E-02
88	GO:0008080: N-acetyltransferase activity	2.59E-02
89	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.59E-02
90	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.59E-02
91	GO:0050662: coenzyme binding	2.73E-02
92	GO:0004252: serine-type endopeptidase activity	2.90E-02
93	GO:0004672: protein kinase activity	3.15E-02
94	GO:0004518: nuclease activity	3.16E-02
95	GO:0003729: mRNA binding	3.22E-02
96	GO:0005200: structural constituent of cytoskeleton	3.61E-02
97	GO:0016413: O-acetyltransferase activity	3.76E-02
98	GO:0016597: amino acid binding	3.76E-02
99	GO:0102483: scopolin beta-glucosidase activity	4.40E-02
100	GO:0008236: serine-type peptidase activity	4.56E-02
101	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009579: thylakoid	8.74E-19
3	GO:0009507: chloroplast	1.02E-16
4	GO:0009543: chloroplast thylakoid lumen	1.12E-16
5	GO:0009535: chloroplast thylakoid membrane	2.65E-16
6	GO:0009534: chloroplast thylakoid	5.84E-15
7	GO:0009570: chloroplast stroma	3.49E-13
8	GO:0009941: chloroplast envelope	6.56E-13
9	GO:0031977: thylakoid lumen	1.06E-09
10	GO:0010007: magnesium chelatase complex	1.48E-05
11	GO:0005886: plasma membrane	6.39E-05
12	GO:0030095: chloroplast photosystem II	6.71E-05
13	GO:0009654: photosystem II oxygen evolving complex	1.29E-04
14	GO:0005576: extracellular region	1.55E-04
15	GO:0042807: central vacuole	2.42E-04
16	GO:0005618: cell wall	2.65E-04
17	GO:0043674: columella	3.02E-04
18	GO:0019898: extrinsic component of membrane	3.60E-04
19	GO:0008180: COP9 signalosome	4.52E-04
20	GO:0005840: ribosome	5.49E-04
21	GO:0048046: apoplast	5.77E-04
22	GO:0030093: chloroplast photosystem I	6.60E-04
23	GO:0016020: membrane	1.06E-03
24	GO:0015630: microtubule cytoskeleton	1.53E-03
25	GO:0032432: actin filament bundle	1.53E-03
26	GO:0046658: anchored component of plasma membrane	2.26E-03
27	GO:0009505: plant-type cell wall	2.67E-03
28	GO:0031225: anchored component of membrane	3.16E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.24E-03
30	GO:0031969: chloroplast membrane	3.98E-03
31	GO:0009986: cell surface	4.60E-03
32	GO:0009533: chloroplast stromal thylakoid	4.60E-03
33	GO:0000326: protein storage vacuole	6.13E-03
34	GO:0019005: SCF ubiquitin ligase complex	6.61E-03
35	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.95E-03
36	GO:0005884: actin filament	9.63E-03
37	GO:0032040: small-subunit processome	1.06E-02
38	GO:0005887: integral component of plasma membrane	1.15E-02
39	GO:0009508: plastid chromosome	1.16E-02
40	GO:0000312: plastid small ribosomal subunit	1.26E-02
41	GO:0000502: proteasome complex	1.46E-02
42	GO:0042651: thylakoid membrane	1.71E-02
43	GO:0015629: actin cytoskeleton	2.07E-02
44	GO:0010287: plastoglobule	2.48E-02
45	GO:0009523: photosystem II	2.87E-02
46	GO:0010319: stromule	3.61E-02
47	GO:0009295: nucleoid	3.61E-02
48	GO:0009705: plant-type vacuole membrane	3.61E-02
49	GO:0030529: intracellular ribonucleoprotein complex	3.92E-02