co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G17880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
2	GO:0046459: short-chain fatty acid metabolic process	0.00E+00
3	GO:0045022: early endosome to late endosome transport	0.00E+00
4	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
5	GO:0048227: plasma membrane to endosome transport	0.00E+00
6	GO:0045185: maintenance of protein location	0.00E+00
7	GO:0010241: ent-kaurene oxidation to kaurenoic acid	0.00E+00
8	GO:0006227: dUDP biosynthetic process	0.00E+00
9	GO:0006592: ornithine biosynthetic process	0.00E+00
10	GO:0006233: dTDP biosynthetic process	0.00E+00
11	GO:0006235: dTTP biosynthetic process	0.00E+00
12	GO:0010111: glyoxysome organization	0.00E+00
13	GO:0006635: fatty acid beta-oxidation	1.12E-05
14	GO:0006014: D-ribose metabolic process	8.18E-05
15	GO:0046686: response to cadmium ion	1.18E-04
16	GO:0016559: peroxisome fission	1.91E-04
17	GO:1903409: reactive oxygen species biosynthetic process	2.20E-04
18	GO:0035344: hypoxanthine transport	2.20E-04
19	GO:0007229: integrin-mediated signaling pathway	2.20E-04
20	GO:0032469: endoplasmic reticulum calcium ion homeostasis	2.20E-04
21	GO:0098721: uracil import across plasma membrane	2.20E-04
22	GO:0098702: adenine import across plasma membrane	2.20E-04
23	GO:0046167: glycerol-3-phosphate biosynthetic process	2.20E-04
24	GO:0035266: meristem growth	2.20E-04
25	GO:0098710: guanine import across plasma membrane	2.20E-04
26	GO:0007292: female gamete generation	2.20E-04
27	GO:0055114: oxidation-reduction process	3.92E-04
28	GO:0048829: root cap development	4.00E-04
29	GO:0006950: response to stress	4.37E-04
30	GO:0015857: uracil transport	4.90E-04
31	GO:0051788: response to misfolded protein	4.90E-04
32	GO:0019483: beta-alanine biosynthetic process	4.90E-04
33	GO:0051258: protein polymerization	4.90E-04
34	GO:0009308: amine metabolic process	4.90E-04
35	GO:0019395: fatty acid oxidation	4.90E-04
36	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	4.90E-04
37	GO:0043100: pyrimidine nucleobase salvage	4.90E-04
38	GO:0015720: allantoin transport	4.90E-04
39	GO:0006641: triglyceride metabolic process	4.90E-04
40	GO:0006212: uracil catabolic process	4.90E-04
41	GO:0006499: N-terminal protein myristoylation	5.65E-04
42	GO:0019563: glycerol catabolic process	7.98E-04
43	GO:0060968: regulation of gene silencing	7.98E-04
44	GO:0006897: endocytosis	8.36E-04
45	GO:0006809: nitric oxide biosynthetic process	1.14E-03
46	GO:0009399: nitrogen fixation	1.14E-03
47	GO:0009113: purine nucleobase biosynthetic process	1.14E-03
48	GO:0006882: cellular zinc ion homeostasis	1.14E-03
49	GO:0019438: aromatic compound biosynthetic process	1.14E-03
50	GO:0006624: vacuolar protein processing	1.14E-03
51	GO:0006072: glycerol-3-phosphate metabolic process	1.14E-03
52	GO:0010188: response to microbial phytotoxin	1.51E-03
53	GO:0006878: cellular copper ion homeostasis	1.51E-03
54	GO:0010222: stem vascular tissue pattern formation	1.51E-03
55	GO:0070534: protein K63-linked ubiquitination	1.51E-03
56	GO:1902584: positive regulation of response to water deprivation	1.51E-03
57	GO:0046907: intracellular transport	1.93E-03
58	GO:0007029: endoplasmic reticulum organization	1.93E-03
59	GO:0018344: protein geranylgeranylation	1.93E-03
60	GO:0019252: starch biosynthetic process	2.09E-03
61	GO:0006979: response to oxidative stress	2.15E-03
62	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.38E-03
63	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.38E-03
64	GO:0006301: postreplication repair	2.38E-03
65	GO:0048827: phyllome development	2.38E-03
66	GO:0048232: male gamete generation	2.38E-03
67	GO:0006555: methionine metabolic process	2.38E-03
68	GO:0007264: small GTPase mediated signal transduction	2.38E-03
69	GO:0043248: proteasome assembly	2.38E-03
70	GO:0042732: D-xylose metabolic process	2.38E-03
71	GO:0006694: steroid biosynthetic process	2.86E-03
72	GO:0048280: vesicle fusion with Golgi apparatus	2.86E-03
73	GO:0019509: L-methionine salvage from methylthioadenosine	2.86E-03
74	GO:0001666: response to hypoxia	3.21E-03
75	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.36E-03
76	GO:0070370: cellular heat acclimation	3.36E-03
77	GO:0009396: folic acid-containing compound biosynthetic process	3.36E-03
78	GO:0006333: chromatin assembly or disassembly	3.36E-03
79	GO:0010044: response to aluminum ion	3.36E-03
80	GO:0098869: cellular oxidant detoxification	3.36E-03
81	GO:0006511: ubiquitin-dependent protein catabolic process	3.69E-03
82	GO:0006605: protein targeting	3.90E-03
83	GO:0010078: maintenance of root meristem identity	3.90E-03
84	GO:0010150: leaf senescence	4.18E-03
85	GO:0010311: lateral root formation	4.40E-03
86	GO:0006526: arginine biosynthetic process	4.47E-03
87	GO:0030968: endoplasmic reticulum unfolded protein response	4.47E-03
88	GO:0043562: cellular response to nitrogen levels	4.47E-03
89	GO:0007568: aging	4.84E-03
90	GO:0006098: pentose-phosphate shunt	5.06E-03
91	GO:0009821: alkaloid biosynthetic process	5.06E-03
92	GO:0008202: steroid metabolic process	5.68E-03
93	GO:0035999: tetrahydrofolate interconversion	5.68E-03
94	GO:0006896: Golgi to vacuole transport	6.32E-03
95	GO:0007064: mitotic sister chromatid cohesion	6.32E-03
96	GO:0006535: cysteine biosynthetic process from serine	6.32E-03
97	GO:0016485: protein processing	6.98E-03
98	GO:0006378: mRNA polyadenylation	6.98E-03
99	GO:0010015: root morphogenesis	6.98E-03
100	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	7.68E-03
101	GO:0000266: mitochondrial fission	7.68E-03
102	GO:0006807: nitrogen compound metabolic process	8.39E-03
103	GO:0002237: response to molecule of bacterial origin	9.13E-03
104	GO:0009933: meristem structural organization	9.13E-03
105	GO:0034605: cellular response to heat	9.13E-03
106	GO:0080167: response to karrikin	9.58E-03
107	GO:0010167: response to nitrate	9.90E-03
108	GO:0010039: response to iron ion	9.90E-03
109	GO:0090351: seedling development	9.90E-03
110	GO:0010053: root epidermal cell differentiation	9.90E-03
111	GO:0007031: peroxisome organization	9.90E-03
112	GO:0046777: protein autophosphorylation	1.04E-02
113	GO:0034976: response to endoplasmic reticulum stress	1.07E-02
114	GO:0000162: tryptophan biosynthetic process	1.07E-02
115	GO:2000377: regulation of reactive oxygen species metabolic process	1.15E-02
116	GO:0019344: cysteine biosynthetic process	1.15E-02
117	GO:0045454: cell redox homeostasis	1.21E-02
118	GO:0009695: jasmonic acid biosynthetic process	1.23E-02
119	GO:0006825: copper ion transport	1.23E-02
120	GO:0051302: regulation of cell division	1.23E-02
121	GO:0031408: oxylipin biosynthetic process	1.32E-02
122	GO:0030433: ubiquitin-dependent ERAD pathway	1.40E-02
123	GO:0007005: mitochondrion organization	1.40E-02
124	GO:0071215: cellular response to abscisic acid stimulus	1.49E-02
125	GO:0009686: gibberellin biosynthetic process	1.49E-02
126	GO:0006012: galactose metabolic process	1.49E-02
127	GO:0009306: protein secretion	1.58E-02
128	GO:0048443: stamen development	1.58E-02
129	GO:0048364: root development	1.66E-02
130	GO:0042147: retrograde transport, endosome to Golgi	1.68E-02
131	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.68E-02
132	GO:0015991: ATP hydrolysis coupled proton transport	1.77E-02
133	GO:0006520: cellular amino acid metabolic process	1.87E-02
134	GO:0010182: sugar mediated signaling pathway	1.87E-02
135	GO:0009960: endosperm development	1.87E-02
136	GO:0048544: recognition of pollen	1.97E-02
137	GO:0009646: response to absence of light	1.97E-02
138	GO:0009749: response to glucose	2.07E-02
139	GO:0006623: protein targeting to vacuole	2.07E-02
140	GO:0006891: intra-Golgi vesicle-mediated transport	2.17E-02
141	GO:0010583: response to cyclopentenone	2.28E-02
142	GO:0016032: viral process	2.28E-02
143	GO:0009630: gravitropism	2.28E-02
144	GO:0071281: cellular response to iron ion	2.38E-02
145	GO:0006464: cellular protein modification process	2.49E-02
146	GO:0006914: autophagy	2.49E-02
147	GO:0006904: vesicle docking involved in exocytosis	2.60E-02
148	GO:0009617: response to bacterium	2.72E-02
149	GO:0010468: regulation of gene expression	2.72E-02
150	GO:0016126: sterol biosynthetic process	2.82E-02
151	GO:0009816: defense response to bacterium, incompatible interaction	2.94E-02
152	GO:0006888: ER to Golgi vesicle-mediated transport	3.17E-02
153	GO:0009611: response to wounding	3.32E-02
154	GO:0035556: intracellular signal transduction	3.45E-02
155	GO:0015031: protein transport	3.51E-02
156	GO:0006811: ion transport	3.66E-02
157	GO:0010043: response to zinc ion	3.78E-02
158	GO:0006970: response to osmotic stress	3.79E-02
159	GO:0006865: amino acid transport	3.91E-02
160	GO:0045087: innate immune response	4.03E-02
161	GO:0016051: carbohydrate biosynthetic process	4.03E-02
162	GO:0009723: response to ethylene	4.07E-02
163	GO:0006099: tricarboxylic acid cycle	4.16E-02
164	GO:0006631: fatty acid metabolic process	4.56E-02
165	GO:0044550: secondary metabolite biosynthetic process	4.73E-02
166	GO:0009744: response to sucrose	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0052616: ent-kaur-16-en-19-ol oxidase activity	0.00E+00
2	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
3	GO:0052617: ent-kaur-16-en-19-al oxidase activity	0.00E+00
4	GO:0052615: ent-kaurene oxidase activity	0.00E+00
5	GO:0015505: uracil:cation symporter activity	0.00E+00
6	GO:0004370: glycerol kinase activity	0.00E+00
7	GO:0004798: thymidylate kinase activity	0.00E+00
8	GO:0004157: dihydropyrimidinase activity	0.00E+00
9	GO:0008777: acetylornithine deacetylase activity	0.00E+00
10	GO:0048244: phytanoyl-CoA dioxygenase activity	0.00E+00
11	GO:0009045: xylose isomerase activity	0.00E+00
12	GO:0015210: uracil transmembrane transporter activity	3.46E-05
13	GO:0004747: ribokinase activity	1.13E-04
14	GO:0008865: fructokinase activity	1.91E-04
15	GO:0015294: solute:cation symporter activity	2.20E-04
16	GO:0052593: tryptamine:oxygen oxidoreductase (deaminating) activity	2.20E-04
17	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.20E-04
18	GO:0052595: aliphatic-amine oxidase activity	2.20E-04
19	GO:0052594: aminoacetone:oxygen oxidoreductase(deaminating) activity	2.20E-04
20	GO:0015207: adenine transmembrane transporter activity	2.20E-04
21	GO:0019707: protein-cysteine S-acyltransferase activity	2.20E-04
22	GO:0052596: phenethylamine:oxygen oxidoreductase (deaminating) activity	2.20E-04
23	GO:0001530: lipopolysaccharide binding	2.20E-04
24	GO:0015208: guanine transmembrane transporter activity	2.20E-04
25	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.41E-04
26	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	4.90E-04
27	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	4.90E-04
28	GO:0004329: formate-tetrahydrofolate ligase activity	4.90E-04
29	GO:0003988: acetyl-CoA C-acyltransferase activity	4.90E-04
30	GO:0004352: glutamate dehydrogenase (NAD+) activity	4.90E-04
31	GO:0019200: carbohydrate kinase activity	4.90E-04
32	GO:0004353: glutamate dehydrogenase [NAD(P)+] activity	4.90E-04
33	GO:0004566: beta-glucuronidase activity	4.90E-04
34	GO:0005274: allantoin uptake transmembrane transporter activity	4.90E-04
35	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	4.90E-04
36	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	4.90E-04
37	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	7.98E-04
38	GO:0004663: Rab geranylgeranyltransferase activity	7.98E-04
39	GO:0005093: Rab GDP-dissociation inhibitor activity	7.98E-04
40	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	7.98E-04
41	GO:0005047: signal recognition particle binding	7.98E-04
42	GO:0016531: copper chaperone activity	7.98E-04
43	GO:0009041: uridylate kinase activity	1.14E-03
44	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.14E-03
45	GO:0004792: thiosulfate sulfurtransferase activity	1.14E-03
46	GO:0004108: citrate (Si)-synthase activity	1.14E-03
47	GO:0030527: structural constituent of chromatin	1.14E-03
48	GO:0004300: enoyl-CoA hydratase activity	1.14E-03
49	GO:0003995: acyl-CoA dehydrogenase activity	1.51E-03
50	GO:0016004: phospholipase activator activity	1.51E-03
51	GO:0004834: tryptophan synthase activity	1.51E-03
52	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.51E-03
53	GO:0043015: gamma-tubulin binding	1.51E-03
54	GO:0003997: acyl-CoA oxidase activity	1.93E-03
55	GO:0004356: glutamate-ammonia ligase activity	1.93E-03
56	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.38E-03
57	GO:0036402: proteasome-activating ATPase activity	2.38E-03
58	GO:0004602: glutathione peroxidase activity	2.86E-03
59	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.86E-03
60	GO:0004124: cysteine synthase activity	2.86E-03
61	GO:0008237: metallopeptidase activity	2.87E-03
62	GO:0008235: metalloexopeptidase activity	3.36E-03
63	GO:0004525: ribonuclease III activity	3.90E-03
64	GO:0004034: aldose 1-epimerase activity	3.90E-03
65	GO:0005096: GTPase activator activity	4.40E-03
66	GO:0008142: oxysterol binding	4.47E-03
67	GO:0050897: cobalt ion binding	4.84E-03
68	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.06E-03
69	GO:0004712: protein serine/threonine/tyrosine kinase activity	5.79E-03
70	GO:0005524: ATP binding	6.15E-03
71	GO:0008171: O-methyltransferase activity	6.32E-03
72	GO:0008794: arsenate reductase (glutaredoxin) activity	6.98E-03
73	GO:0004177: aminopeptidase activity	6.98E-03
74	GO:0005506: iron ion binding	7.20E-03
75	GO:0000976: transcription regulatory region sequence-specific DNA binding	7.68E-03
76	GO:0004521: endoribonuclease activity	7.68E-03
77	GO:0005262: calcium channel activity	8.39E-03
78	GO:0019888: protein phosphatase regulator activity	8.39E-03
79	GO:0008131: primary amine oxidase activity	9.13E-03
80	GO:0004175: endopeptidase activity	9.13E-03
81	GO:0017025: TBP-class protein binding	9.90E-03
82	GO:0031625: ubiquitin protein ligase binding	1.02E-02
83	GO:0031418: L-ascorbic acid binding	1.15E-02
84	GO:0043130: ubiquitin binding	1.15E-02
85	GO:0016491: oxidoreductase activity	1.19E-02
86	GO:0043424: protein histidine kinase binding	1.23E-02
87	GO:0005507: copper ion binding	1.46E-02
88	GO:0003924: GTPase activity	1.57E-02
89	GO:0003756: protein disulfide isomerase activity	1.58E-02
90	GO:0005525: GTP binding	1.81E-02
91	GO:0004872: receptor activity	2.07E-02
92	GO:0048038: quinone binding	2.17E-02
93	GO:0004197: cysteine-type endopeptidase activity	2.28E-02
94	GO:0008289: lipid binding	2.38E-02
95	GO:0016301: kinase activity	2.64E-02
96	GO:0046872: metal ion binding	2.81E-02
97	GO:0051213: dioxygenase activity	2.82E-02
98	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.29E-02
99	GO:0008236: serine-type peptidase activity	3.29E-02
100	GO:0003682: chromatin binding	3.73E-02
101	GO:0003746: translation elongation factor activity	4.03E-02
102	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.03E-02
103	GO:0000149: SNARE binding	4.30E-02
104	GO:0061630: ubiquitin protein ligase activity	4.58E-02
105	GO:0020037: heme binding	4.78E-02
106	GO:0005484: SNAP receptor activity	4.83E-02
107	GO:0019825: oxygen binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0010009: cytoplasmic side of endosome membrane	0.00E+00
2	GO:0005785: signal recognition particle receptor complex	0.00E+00
3	GO:0005777: peroxisome	1.53E-04
4	GO:0009514: glyoxysome	2.36E-04
5	GO:0030125: clathrin vesicle coat	4.00E-04
6	GO:0005773: vacuole	4.38E-04
7	GO:0016021: integral component of membrane	5.72E-04
8	GO:0042406: extrinsic component of endoplasmic reticulum membrane	7.98E-04
9	GO:0005783: endoplasmic reticulum	9.96E-04
10	GO:0005774: vacuolar membrane	1.09E-03
11	GO:0005905: clathrin-coated pit	1.12E-03
12	GO:0000323: lytic vacuole	1.14E-03
13	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.14E-03
14	GO:0005849: mRNA cleavage factor complex	1.14E-03
15	GO:0005794: Golgi apparatus	1.36E-03
16	GO:0005829: cytosol	1.40E-03
17	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.51E-03
18	GO:0031372: UBC13-MMS2 complex	1.51E-03
19	GO:0032586: protein storage vacuole membrane	1.51E-03
20	GO:0005886: plasma membrane	2.21E-03
21	GO:0030140: trans-Golgi network transport vesicle	2.38E-03
22	GO:0031597: cytosolic proteasome complex	2.86E-03
23	GO:0005778: peroxisomal membrane	2.87E-03
24	GO:0031595: nuclear proteasome complex	3.36E-03
25	GO:0005737: cytoplasm	3.41E-03
26	GO:0012507: ER to Golgi transport vesicle membrane	3.90E-03
27	GO:0030131: clathrin adaptor complex	3.90E-03
28	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.47E-03
29	GO:0000326: protein storage vacuole	4.47E-03
30	GO:0005779: integral component of peroxisomal membrane	4.47E-03
31	GO:0031901: early endosome membrane	5.06E-03
32	GO:0008540: proteasome regulatory particle, base subcomplex	5.68E-03
33	GO:0000159: protein phosphatase type 2A complex	6.98E-03
34	GO:0005765: lysosomal membrane	6.98E-03
35	GO:0000502: proteasome complex	9.22E-03
36	GO:0030176: integral component of endoplasmic reticulum membrane	9.90E-03
37	GO:0005769: early endosome	1.07E-02
38	GO:0005758: mitochondrial intermembrane space	1.15E-02
39	GO:0005741: mitochondrial outer membrane	1.32E-02
40	GO:0005789: endoplasmic reticulum membrane	1.54E-02
41	GO:0005770: late endosome	1.87E-02
42	GO:0005759: mitochondrial matrix	2.07E-02
43	GO:0000785: chromatin	2.28E-02
44	GO:0009707: chloroplast outer membrane	3.41E-02
45	GO:0000325: plant-type vacuole	3.78E-02
46	GO:0031902: late endosome membrane	4.56E-02
47	GO:0031201: SNARE complex	4.56E-02