co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G17850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000188: inactivation of MAPK activity	0.00E+00
2	GO:0035420: MAPK cascade involved in innate immune response	0.00E+00
3	GO:0007160: cell-matrix adhesion	0.00E+00
4	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
5	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
6	GO:0008361: regulation of cell size	2.30E-05
7	GO:0071902: positive regulation of protein serine/threonine kinase activity	2.53E-05
8	GO:0006521: regulation of cellular amino acid metabolic process	6.44E-05
9	GO:0006610: ribosomal protein import into nucleus	6.44E-05
10	GO:2000071: regulation of defense response by callose deposition	6.44E-05
11	GO:0016197: endosomal transport	6.44E-05
12	GO:0048571: long-day photoperiodism	6.44E-05
13	GO:0006517: protein deglycosylation	1.13E-04
14	GO:0032940: secretion by cell	1.13E-04
15	GO:0006473: protein acetylation	1.13E-04
16	GO:0006013: mannose metabolic process	1.13E-04
17	GO:0010506: regulation of autophagy	1.13E-04
18	GO:0032012: regulation of ARF protein signal transduction	1.13E-04
19	GO:0071230: cellular response to amino acid stimulus	1.13E-04
20	GO:0031929: TOR signaling	1.13E-04
21	GO:1901000: regulation of response to salt stress	1.69E-04
22	GO:0010587: miRNA catabolic process	1.69E-04
23	GO:0080119: ER body organization	1.69E-04
24	GO:0071323: cellular response to chitin	1.69E-04
25	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.04E-04
26	GO:0010483: pollen tube reception	2.30E-04
27	GO:0045723: positive regulation of fatty acid biosynthetic process	2.30E-04
28	GO:1990937: xylan acetylation	2.30E-04
29	GO:0045324: late endosome to vacuole transport	2.30E-04
30	GO:0016049: cell growth	2.41E-04
31	GO:0007029: endoplasmic reticulum organization	2.95E-04
32	GO:0010225: response to UV-C	2.95E-04
33	GO:0032876: negative regulation of DNA endoreduplication	2.95E-04
34	GO:0030308: negative regulation of cell growth	2.95E-04
35	GO:0034052: positive regulation of plant-type hypersensitive response	2.95E-04
36	GO:0048232: male gamete generation	3.65E-04
37	GO:0009267: cellular response to starvation	3.65E-04
38	GO:0000060: protein import into nucleus, translocation	3.65E-04
39	GO:0045491: xylan metabolic process	3.65E-04
40	GO:0009635: response to herbicide	3.65E-04
41	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	5.11E-04
42	GO:0030307: positive regulation of cell growth	5.11E-04
43	GO:0006491: N-glycan processing	5.89E-04
44	GO:1900150: regulation of defense response to fungus	5.89E-04
45	GO:0006417: regulation of translation	6.12E-04
46	GO:0006607: NLS-bearing protein import into nucleus	7.52E-04
47	GO:0007338: single fertilization	7.52E-04
48	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	7.52E-04
49	GO:0048589: developmental growth	7.52E-04
50	GO:0016573: histone acetylation	8.38E-04
51	GO:0006298: mismatch repair	9.24E-04
52	GO:0050826: response to freezing	1.20E-03
53	GO:0007030: Golgi organization	1.40E-03
54	GO:0080188: RNA-directed DNA methylation	1.40E-03
55	GO:0042023: DNA endoreduplication	1.50E-03
56	GO:0006487: protein N-linked glycosylation	1.61E-03
57	GO:0009863: salicylic acid mediated signaling pathway	1.61E-03
58	GO:0010187: negative regulation of seed germination	1.61E-03
59	GO:0006289: nucleotide-excision repair	1.61E-03
60	GO:0016575: histone deacetylation	1.72E-03
61	GO:0009294: DNA mediated transformation	2.06E-03
62	GO:0045492: xylan biosynthetic process	2.18E-03
63	GO:0009561: megagametogenesis	2.18E-03
64	GO:0010091: trichome branching	2.18E-03
65	GO:0051028: mRNA transport	2.30E-03
66	GO:0006606: protein import into nucleus	2.42E-03
67	GO:0010197: polar nucleus fusion	2.55E-03
68	GO:0048868: pollen tube development	2.55E-03
69	GO:0009741: response to brassinosteroid	2.55E-03
70	GO:0046777: protein autophosphorylation	2.63E-03
71	GO:0009791: post-embryonic development	2.80E-03
72	GO:0051607: defense response to virus	3.63E-03
73	GO:0016579: protein deubiquitination	3.63E-03
74	GO:0048364: root development	3.76E-03
75	GO:0009816: defense response to bacterium, incompatible interaction	3.91E-03
76	GO:0006888: ER to Golgi vesicle-mediated transport	4.21E-03
77	GO:0048573: photoperiodism, flowering	4.21E-03
78	GO:0008219: cell death	4.52E-03
79	GO:0009834: plant-type secondary cell wall biogenesis	4.83E-03
80	GO:0009737: response to abscisic acid	5.24E-03
81	GO:0009867: jasmonic acid mediated signaling pathway	5.31E-03
82	GO:0009908: flower development	5.76E-03
83	GO:0009738: abscisic acid-activated signaling pathway	6.16E-03
84	GO:0008283: cell proliferation	6.32E-03
85	GO:0000209: protein polyubiquitination	6.50E-03
86	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	7.22E-03
87	GO:0042538: hyperosmotic salinity response	7.40E-03
88	GO:0006364: rRNA processing	7.78E-03
89	GO:0010224: response to UV-B	7.97E-03
90	GO:0016567: protein ubiquitination	8.24E-03
91	GO:0048367: shoot system development	8.93E-03
92	GO:0009626: plant-type hypersensitive response	9.13E-03
93	GO:0009651: response to salt stress	9.33E-03
94	GO:0018105: peptidyl-serine phosphorylation	1.02E-02
95	GO:0009742: brassinosteroid mediated signaling pathway	1.04E-02
96	GO:0000398: mRNA splicing, via spliceosome	1.10E-02
97	GO:0009845: seed germination	1.23E-02
98	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.58E-02
99	GO:0006470: protein dephosphorylation	1.61E-02
100	GO:0015031: protein transport	1.65E-02
101	GO:0009409: response to cold	1.75E-02
102	GO:0006952: defense response	1.77E-02
103	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	1.89E-02
104	GO:0006810: transport	1.90E-02
105	GO:0009723: response to ethylene	2.21E-02
106	GO:0048366: leaf development	2.24E-02
107	GO:0010200: response to chitin	2.38E-02
108	GO:0016192: vesicle-mediated transport	2.41E-02
109	GO:0045892: negative regulation of transcription, DNA-templated	2.67E-02
110	GO:0006468: protein phosphorylation	2.68E-02
111	GO:0006886: intracellular protein transport	2.70E-02
112	GO:0006869: lipid transport	2.82E-02
113	GO:0009751: response to salicylic acid	3.04E-02
114	GO:0006397: mRNA processing	3.16E-02
115	GO:0009873: ethylene-activated signaling pathway	3.68E-02
116	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.75E-02
117	GO:0009611: response to wounding	4.69E-02
118	GO:0035556: intracellular signal transduction	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0017017: MAP kinase tyrosine/serine/threonine phosphatase activity	0.00E+00
2	GO:0004694: eukaryotic translation initiation factor 2alpha kinase activity	0.00E+00
3	GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity	0.00E+00
4	GO:0005515: protein binding	2.58E-05
5	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	6.44E-05
6	GO:0004534: 5'-3' exoribonuclease activity	6.44E-05
7	GO:0005086: ARF guanyl-nucleotide exchange factor activity	2.30E-04
8	GO:0001106: RNA polymerase II transcription corepressor activity	2.30E-04
9	GO:0008270: zinc ion binding	2.69E-04
10	GO:0004709: MAP kinase kinase kinase activity	3.65E-04
11	GO:0004559: alpha-mannosidase activity	4.36E-04
12	GO:0005085: guanyl-nucleotide exchange factor activity	5.11E-04
13	GO:0030674: protein binding, bridging	5.89E-04
14	GO:0016874: ligase activity	7.34E-04
15	GO:0031490: chromatin DNA binding	8.38E-04
16	GO:0000049: tRNA binding	1.11E-03
17	GO:0008139: nuclear localization sequence binding	1.20E-03
18	GO:0003712: transcription cofactor activity	1.40E-03
19	GO:0004725: protein tyrosine phosphatase activity	1.50E-03
20	GO:0004407: histone deacetylase activity	1.61E-03
21	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.83E-03
22	GO:0004402: histone acetyltransferase activity	2.42E-03
23	GO:0003713: transcription coactivator activity	2.55E-03
24	GO:0008536: Ran GTPase binding	2.55E-03
25	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.94E-03
26	GO:0004842: ubiquitin-protein transferase activity	3.03E-03
27	GO:0004672: protein kinase activity	3.27E-03
28	GO:0003729: mRNA binding	3.33E-03
29	GO:0003684: damaged DNA binding	3.34E-03
30	GO:0004674: protein serine/threonine kinase activity	3.35E-03
31	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.48E-03
32	GO:0003697: single-stranded DNA binding	5.31E-03
33	GO:0043621: protein self-association	6.67E-03
34	GO:0035091: phosphatidylinositol binding	6.67E-03
35	GO:0008565: protein transporter activity	1.32E-02
36	GO:0005215: transporter activity	1.43E-02
37	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.73E-02
38	GO:0003682: chromatin binding	2.07E-02
39	GO:0061630: ubiquitin protein ligase activity	2.41E-02
40	GO:0016757: transferase activity, transferring glycosyl groups	4.39E-02
41	GO:0000166: nucleotide binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0000111: nucleotide-excision repair factor 2 complex	0.00E+00
2	GO:0008305: integrin complex	0.00E+00
3	GO:0071942: XPC complex	0.00E+00
4	GO:0043680: filiform apparatus	0.00E+00
5	GO:0031931: TORC1 complex	1.13E-04
6	GO:0030127: COPII vesicle coat	3.65E-04
7	GO:0032588: trans-Golgi network membrane	3.65E-04
8	GO:0000118: histone deacetylase complex	4.36E-04
9	GO:0000139: Golgi membrane	4.79E-04
10	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	5.11E-04
11	GO:0034399: nuclear periphery	5.89E-04
12	GO:0015030: Cajal body	8.38E-04
13	GO:0005769: early endosome	1.50E-03
14	GO:0005802: trans-Golgi network	1.50E-03
15	GO:0005794: Golgi apparatus	1.84E-03
16	GO:0031965: nuclear membrane	2.80E-03
17	GO:0000785: chromatin	3.07E-03
18	GO:0005643: nuclear pore	4.52E-03
19	GO:0005634: nucleus	4.74E-03
20	GO:0005681: spliceosomal complex	8.74E-03
21	GO:0005768: endosome	1.16E-02
22	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.13E-02
23	GO:0043231: intracellular membrane-bounded organelle	3.29E-02