co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G17640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009773: photosynthetic electron transport in photosystem I	1.88E-08
2	GO:0009735: response to cytokinin	2.72E-05
3	GO:0033481: galacturonate biosynthetic process	9.50E-05
4	GO:1902458: positive regulation of stomatal opening	9.50E-05
5	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	9.50E-05
6	GO:0051180: vitamin transport	9.50E-05
7	GO:0071277: cellular response to calcium ion	9.50E-05
8	GO:0030974: thiamine pyrophosphate transport	9.50E-05
9	GO:0010207: photosystem II assembly	2.13E-04
10	GO:0001736: establishment of planar polarity	2.24E-04
11	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.24E-04
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.24E-04
13	GO:0015893: drug transport	2.24E-04
14	GO:0043255: regulation of carbohydrate biosynthetic process	2.24E-04
15	GO:0010115: regulation of abscisic acid biosynthetic process	2.24E-04
16	GO:0016998: cell wall macromolecule catabolic process	3.65E-04
17	GO:0006000: fructose metabolic process	3.73E-04
18	GO:0006518: peptide metabolic process	3.73E-04
19	GO:0015979: photosynthesis	4.12E-04
20	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.37E-04
21	GO:0071484: cellular response to light intensity	5.37E-04
22	GO:0080170: hydrogen peroxide transmembrane transport	5.37E-04
23	GO:0010182: sugar mediated signaling pathway	5.95E-04
24	GO:0010037: response to carbon dioxide	7.14E-04
25	GO:0015976: carbon utilization	7.14E-04
26	GO:0045727: positive regulation of translation	7.14E-04
27	GO:2000122: negative regulation of stomatal complex development	7.14E-04
28	GO:0016120: carotene biosynthetic process	9.02E-04
29	GO:0006564: L-serine biosynthetic process	9.02E-04
30	GO:0010236: plastoquinone biosynthetic process	9.02E-04
31	GO:0045038: protein import into chloroplast thylakoid membrane	9.02E-04
32	GO:0010027: thylakoid membrane organization	1.04E-03
33	GO:0006561: proline biosynthetic process	1.10E-03
34	GO:0010405: arabinogalactan protein metabolic process	1.10E-03
35	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.10E-03
36	GO:0009913: epidermal cell differentiation	1.10E-03
37	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.10E-03
38	GO:0010337: regulation of salicylic acid metabolic process	1.10E-03
39	GO:0010189: vitamin E biosynthetic process	1.31E-03
40	GO:0030244: cellulose biosynthetic process	1.33E-03
41	GO:0009395: phospholipid catabolic process	1.54E-03
42	GO:0009772: photosynthetic electron transport in photosystem II	1.54E-03
43	GO:0050829: defense response to Gram-negative bacterium	1.54E-03
44	GO:1900057: positive regulation of leaf senescence	1.54E-03
45	GO:0010444: guard mother cell differentiation	1.54E-03
46	GO:0009409: response to cold	1.60E-03
47	GO:0031540: regulation of anthocyanin biosynthetic process	1.78E-03
48	GO:0008610: lipid biosynthetic process	1.78E-03
49	GO:0042255: ribosome assembly	1.78E-03
50	GO:0046620: regulation of organ growth	1.78E-03
51	GO:0030091: protein repair	1.78E-03
52	GO:0009704: de-etiolation	1.78E-03
53	GO:2000070: regulation of response to water deprivation	1.78E-03
54	GO:0006002: fructose 6-phosphate metabolic process	2.03E-03
55	GO:0015996: chlorophyll catabolic process	2.03E-03
56	GO:0009827: plant-type cell wall modification	2.03E-03
57	GO:0007186: G-protein coupled receptor signaling pathway	2.03E-03
58	GO:0032544: plastid translation	2.03E-03
59	GO:0009926: auxin polar transport	2.16E-03
60	GO:0010206: photosystem II repair	2.29E-03
61	GO:0090333: regulation of stomatal closure	2.29E-03
62	GO:0010205: photoinhibition	2.56E-03
63	GO:0009688: abscisic acid biosynthetic process	2.85E-03
64	GO:0048829: root cap development	2.85E-03
65	GO:0006032: chitin catabolic process	2.85E-03
66	GO:0009809: lignin biosynthetic process	2.89E-03
67	GO:0006869: lipid transport	3.07E-03
68	GO:0048765: root hair cell differentiation	3.14E-03
69	GO:0000038: very long-chain fatty acid metabolic process	3.14E-03
70	GO:0009750: response to fructose	3.14E-03
71	GO:0006820: anion transport	3.44E-03
72	GO:0045037: protein import into chloroplast stroma	3.44E-03
73	GO:0010229: inflorescence development	3.76E-03
74	GO:0009718: anthocyanin-containing compound biosynthetic process	3.76E-03
75	GO:0009725: response to hormone	3.76E-03
76	GO:0006094: gluconeogenesis	3.76E-03
77	GO:0005986: sucrose biosynthetic process	3.76E-03
78	GO:0048467: gynoecium development	4.08E-03
79	GO:0019253: reductive pentose-phosphate cycle	4.08E-03
80	GO:0010053: root epidermal cell differentiation	4.41E-03
81	GO:0009225: nucleotide-sugar metabolic process	4.41E-03
82	GO:0009825: multidimensional cell growth	4.41E-03
83	GO:0010167: response to nitrate	4.41E-03
84	GO:0005985: sucrose metabolic process	4.41E-03
85	GO:0071732: cellular response to nitric oxide	4.41E-03
86	GO:0006833: water transport	4.75E-03
87	GO:0010025: wax biosynthetic process	4.75E-03
88	GO:0006636: unsaturated fatty acid biosynthetic process	4.75E-03
89	GO:0042023: DNA endoreduplication	4.75E-03
90	GO:0006487: protein N-linked glycosylation	5.10E-03
91	GO:0007017: microtubule-based process	5.46E-03
92	GO:0009768: photosynthesis, light harvesting in photosystem I	5.46E-03
93	GO:0009269: response to desiccation	5.83E-03
94	GO:0031408: oxylipin biosynthetic process	5.83E-03
95	GO:0003333: amino acid transmembrane transport	5.83E-03
96	GO:0006633: fatty acid biosynthetic process	6.42E-03
97	GO:0071369: cellular response to ethylene stimulus	6.58E-03
98	GO:0042127: regulation of cell proliferation	6.98E-03
99	GO:0009306: protein secretion	6.98E-03
100	GO:0006810: transport	7.53E-03
101	GO:0042335: cuticle development	7.79E-03
102	GO:0034220: ion transmembrane transport	7.79E-03
103	GO:0009651: response to salt stress	7.83E-03
104	GO:0009741: response to brassinosteroid	8.21E-03
105	GO:0045489: pectin biosynthetic process	8.21E-03
106	GO:0009958: positive gravitropism	8.21E-03
107	GO:0015986: ATP synthesis coupled proton transport	8.63E-03
108	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	9.51E-03
109	GO:0002229: defense response to oomycetes	9.51E-03
110	GO:0032502: developmental process	9.96E-03
111	GO:0071281: cellular response to iron ion	1.04E-02
112	GO:0009658: chloroplast organization	1.09E-02
113	GO:0010252: auxin homeostasis	1.09E-02
114	GO:0016126: sterol biosynthetic process	1.23E-02
115	GO:0042128: nitrate assimilation	1.33E-02
116	GO:0015995: chlorophyll biosynthetic process	1.38E-02
117	GO:0010411: xyloglucan metabolic process	1.38E-02
118	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.40E-02
119	GO:0009817: defense response to fungus, incompatible interaction	1.49E-02
120	GO:0018298: protein-chromophore linkage	1.49E-02
121	GO:0010311: lateral root formation	1.54E-02
122	GO:0009834: plant-type secondary cell wall biogenesis	1.59E-02
123	GO:0010218: response to far red light	1.59E-02
124	GO:0010119: regulation of stomatal movement	1.65E-02
125	GO:0006865: amino acid transport	1.70E-02
126	GO:0009414: response to water deprivation	1.75E-02
127	GO:0009637: response to blue light	1.76E-02
128	GO:0071555: cell wall organization	1.80E-02
129	GO:0006839: mitochondrial transport	1.93E-02
130	GO:0009408: response to heat	2.01E-02
131	GO:0009733: response to auxin	2.09E-02
132	GO:0010114: response to red light	2.10E-02
133	GO:0009744: response to sucrose	2.10E-02
134	GO:0008283: cell proliferation	2.10E-02
135	GO:0042546: cell wall biogenesis	2.16E-02
136	GO:0006364: rRNA processing	2.60E-02
137	GO:0006857: oligopeptide transport	2.73E-02
138	GO:0009734: auxin-activated signaling pathway	2.83E-02
139	GO:0006096: glycolytic process	2.93E-02
140	GO:0048316: seed development	3.00E-02
141	GO:0055114: oxidation-reduction process	3.04E-02
142	GO:0009624: response to nematode	3.34E-02
143	GO:0018105: peptidyl-serine phosphorylation	3.42E-02
144	GO:0051726: regulation of cell cycle	3.49E-02
145	GO:0009742: brassinosteroid mediated signaling pathway	3.49E-02
146	GO:0009416: response to light stimulus	3.56E-02
147	GO:0045893: positive regulation of transcription, DNA-templated	4.08E-02
148	GO:0009737: response to abscisic acid	4.62E-02
149	GO:0007623: circadian rhythm	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:1990534: thermospermine oxidase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
6	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	9.50E-05
7	GO:0090422: thiamine pyrophosphate transporter activity	9.50E-05
8	GO:0019210: kinase inhibitor activity	9.50E-05
9	GO:0004617: phosphoglycerate dehydrogenase activity	2.24E-04
10	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.24E-04
11	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	5.37E-04
12	GO:0010011: auxin binding	7.14E-04
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.14E-04
14	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	7.14E-04
15	GO:0010328: auxin influx transmembrane transporter activity	7.14E-04
16	GO:0052793: pectin acetylesterase activity	7.14E-04
17	GO:0004506: squalene monooxygenase activity	7.14E-04
18	GO:0050378: UDP-glucuronate 4-epimerase activity	7.14E-04
19	GO:0008381: mechanically-gated ion channel activity	9.02E-04
20	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.10E-03
21	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.31E-03
22	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.31E-03
23	GO:0052747: sinapyl alcohol dehydrogenase activity	1.78E-03
24	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.03E-03
25	GO:0015293: symporter activity	2.42E-03
26	GO:0004568: chitinase activity	2.85E-03
27	GO:0003690: double-stranded DNA binding	2.99E-03
28	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.44E-03
29	GO:0004089: carbonate dehydratase activity	3.76E-03
30	GO:0004565: beta-galactosidase activity	3.76E-03
31	GO:0004022: alcohol dehydrogenase (NAD) activity	3.76E-03
32	GO:0008266: poly(U) RNA binding	4.08E-03
33	GO:0008131: primary amine oxidase activity	4.08E-03
34	GO:0031409: pigment binding	4.75E-03
35	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.75E-03
36	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.75E-03
37	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.75E-03
38	GO:0005528: FK506 binding	5.10E-03
39	GO:0019843: rRNA binding	5.12E-03
40	GO:0004176: ATP-dependent peptidase activity	5.83E-03
41	GO:0003727: single-stranded RNA binding	6.98E-03
42	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	8.21E-03
43	GO:0050662: coenzyme binding	8.63E-03
44	GO:0004872: receptor activity	9.06E-03
45	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.51E-03
46	GO:0048038: quinone binding	9.51E-03
47	GO:0016759: cellulose synthase activity	1.09E-02
48	GO:0016788: hydrolase activity, acting on ester bonds	1.11E-02
49	GO:0005200: structural constituent of cytoskeleton	1.14E-02
50	GO:0016413: O-acetyltransferase activity	1.18E-02
51	GO:0016597: amino acid binding	1.18E-02
52	GO:0015250: water channel activity	1.23E-02
53	GO:0016168: chlorophyll binding	1.28E-02
54	GO:0008375: acetylglucosaminyltransferase activity	1.33E-02
55	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.33E-02
56	GO:0004683: calmodulin-dependent protein kinase activity	1.38E-02
57	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.38E-02
58	GO:0030247: polysaccharide binding	1.38E-02
59	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.43E-02
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.49E-02
61	GO:0052689: carboxylic ester hydrolase activity	1.50E-02
62	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.59E-02
63	GO:0004222: metalloendopeptidase activity	1.59E-02
64	GO:0003993: acid phosphatase activity	1.81E-02
65	GO:0005215: transporter activity	2.05E-02
66	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.35E-02
67	GO:0051287: NAD binding	2.41E-02
68	GO:0015171: amino acid transmembrane transporter activity	2.80E-02
69	GO:0008289: lipid binding	2.80E-02
70	GO:0031625: ubiquitin protein ligase binding	2.80E-02
71	GO:0045735: nutrient reservoir activity	2.93E-02
72	GO:0016746: transferase activity, transferring acyl groups	3.42E-02
73	GO:0016758: transferase activity, transferring hexosyl groups	3.85E-02
74	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.68E-02
75	GO:0030246: carbohydrate binding	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	5.02E-09
3	GO:0009534: chloroplast thylakoid	4.04E-07
4	GO:0048046: apoplast	6.75E-07
5	GO:0009507: chloroplast	8.89E-07
6	GO:0010319: stromule	1.61E-06
7	GO:0016021: integral component of membrane	2.72E-06
8	GO:0009579: thylakoid	5.44E-05
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.24E-05
10	GO:0009941: chloroplast envelope	8.78E-05
11	GO:0009528: plastid inner membrane	3.73E-04
12	GO:0015630: microtubule cytoskeleton	5.37E-04
13	GO:0010287: plastoglobule	6.06E-04
14	GO:0009527: plastid outer membrane	7.14E-04
15	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.10E-03
16	GO:0009986: cell surface	1.54E-03
17	GO:0008180: COP9 signalosome	2.29E-03
18	GO:0005794: Golgi apparatus	3.43E-03
19	GO:0005768: endosome	3.59E-03
20	GO:0030095: chloroplast photosystem II	4.08E-03
21	GO:0030076: light-harvesting complex	4.41E-03
22	GO:0009543: chloroplast thylakoid lumen	5.12E-03
23	GO:0042651: thylakoid membrane	5.46E-03
24	GO:0009532: plastid stroma	5.83E-03
25	GO:0009570: chloroplast stroma	8.35E-03
26	GO:0009522: photosystem I	8.63E-03
27	GO:0046658: anchored component of plasma membrane	9.35E-03
28	GO:0005886: plasma membrane	9.79E-03
29	GO:0032580: Golgi cisterna membrane	1.09E-02
30	GO:0005802: trans-Golgi network	1.34E-02
31	GO:0031969: chloroplast membrane	1.36E-02
32	GO:0019005: SCF ubiquitin ligase complex	1.49E-02
33	GO:0009707: chloroplast outer membrane	1.49E-02
34	GO:0009536: plastid	2.33E-02
35	GO:0000502: proteasome complex	2.60E-02
36	GO:0005618: cell wall	3.32E-02
37	GO:0009706: chloroplast inner membrane	3.34E-02
38	GO:0005576: extracellular region	4.71E-02
39	GO:0016020: membrane	4.87E-02