Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G17020

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019481: L-alanine catabolic process, by transamination0.00E+00
2GO:0010398: xylogalacturonan metabolic process0.00E+00
3GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
4GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
5GO:0000390: spliceosomal complex disassembly0.00E+00
6GO:0006105: succinate metabolic process0.00E+00
7GO:0019484: beta-alanine catabolic process0.00E+00
8GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
9GO:0010730: negative regulation of hydrogen peroxide biosynthetic process0.00E+00
10GO:0042344: indole glucosinolate catabolic process1.79E-05
11GO:0009399: nitrogen fixation3.96E-05
12GO:0042732: D-xylose metabolic process1.60E-04
13GO:0046167: glycerol-3-phosphate biosynthetic process3.34E-04
14GO:0035266: meristem growth3.34E-04
15GO:0009450: gamma-aminobutyric acid catabolic process3.34E-04
16GO:0007292: female gamete generation3.34E-04
17GO:1990641: response to iron ion starvation3.34E-04
18GO:0010184: cytokinin transport3.34E-04
19GO:1902265: abscisic acid homeostasis3.34E-04
20GO:0009865: pollen tube adhesion3.34E-04
21GO:0071366: cellular response to indolebutyric acid stimulus3.34E-04
22GO:0006540: glutamate decarboxylation to succinate3.34E-04
23GO:0009819: drought recovery3.55E-04
24GO:0009415: response to water3.55E-04
25GO:0035556: intracellular signal transduction5.46E-04
26GO:0010286: heat acclimation6.60E-04
27GO:0055114: oxidation-reduction process6.66E-04
28GO:0046686: response to cadmium ion6.90E-04
29GO:0042742: defense response to bacterium7.13E-04
30GO:0048829: root cap development7.22E-04
31GO:0051258: protein polymerization7.29E-04
32GO:0009257: 10-formyltetrahydrofolate biosynthetic process7.29E-04
33GO:0010033: response to organic substance7.29E-04
34GO:0006641: triglyceride metabolic process7.29E-04
35GO:0006101: citrate metabolic process7.29E-04
36GO:0051788: response to misfolded protein7.29E-04
37GO:1900459: positive regulation of brassinosteroid mediated signaling pathway7.29E-04
38GO:0001666: response to hypoxia7.65E-04
39GO:0052544: defense response by callose deposition in cell wall8.32E-04
40GO:0006970: response to osmotic stress9.09E-04
41GO:0033523: histone H2B ubiquitination1.18E-03
42GO:0030029: actin filament-based process1.18E-03
43GO:0060968: regulation of gene silencing1.18E-03
44GO:0006954: inflammatory response1.18E-03
45GO:0019563: glycerol catabolic process1.18E-03
46GO:0006468: protein phosphorylation1.55E-03
47GO:0006882: cellular zinc ion homeostasis1.70E-03
48GO:0051259: protein oligomerization1.70E-03
49GO:0019438: aromatic compound biosynthetic process1.70E-03
50GO:0006624: vacuolar protein processing1.70E-03
51GO:0048194: Golgi vesicle budding1.70E-03
52GO:0006020: inositol metabolic process1.70E-03
53GO:0010601: positive regulation of auxin biosynthetic process1.70E-03
54GO:0009650: UV protection1.70E-03
55GO:0009113: purine nucleobase biosynthetic process1.70E-03
56GO:0006072: glycerol-3-phosphate metabolic process1.70E-03
57GO:0015749: monosaccharide transport1.70E-03
58GO:1901332: negative regulation of lateral root development1.70E-03
59GO:0009651: response to salt stress1.91E-03
60GO:0009269: response to desiccation2.02E-03
61GO:0006542: glutamine biosynthetic process2.28E-03
62GO:0006646: phosphatidylethanolamine biosynthetic process2.28E-03
63GO:0009687: abscisic acid metabolic process2.28E-03
64GO:0015743: malate transport2.28E-03
65GO:0033320: UDP-D-xylose biosynthetic process2.28E-03
66GO:1902584: positive regulation of response to water deprivation2.28E-03
67GO:0006536: glutamate metabolic process2.28E-03
68GO:0042273: ribosomal large subunit biogenesis2.28E-03
69GO:0010188: response to microbial phytotoxin2.28E-03
70GO:0006878: cellular copper ion homeostasis2.28E-03
71GO:0006979: response to oxidative stress2.32E-03
72GO:0071215: cellular response to abscisic acid stimulus2.41E-03
73GO:0009617: response to bacterium2.44E-03
74GO:0043097: pyrimidine nucleoside salvage2.91E-03
75GO:0007029: endoplasmic reticulum organization2.91E-03
76GO:0005513: detection of calcium ion2.91E-03
77GO:0051603: proteolysis involved in cellular protein catabolic process3.02E-03
78GO:0006511: ubiquitin-dependent protein catabolic process3.25E-03
79GO:0046323: glucose import3.30E-03
80GO:0048544: recognition of pollen3.55E-03
81GO:0015691: cadmium ion transport3.60E-03
82GO:0048827: phyllome development3.60E-03
83GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation3.60E-03
84GO:0048232: male gamete generation3.60E-03
85GO:0006555: methionine metabolic process3.60E-03
86GO:0043248: proteasome assembly3.60E-03
87GO:0009267: cellular response to starvation3.60E-03
88GO:0006206: pyrimidine nucleobase metabolic process3.60E-03
89GO:0006014: D-ribose metabolic process3.60E-03
90GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly3.60E-03
91GO:0000741: karyogamy3.60E-03
92GO:0006635: fatty acid beta-oxidation4.08E-03
93GO:0007165: signal transduction4.10E-03
94GO:0071470: cellular response to osmotic stress4.33E-03
95GO:0019509: L-methionine salvage from methylthioadenosine4.33E-03
96GO:0045926: negative regulation of growth4.33E-03
97GO:0009612: response to mechanical stimulus4.33E-03
98GO:0006694: steroid biosynthetic process4.33E-03
99GO:0010044: response to aluminum ion5.11E-03
100GO:0098869: cellular oxidant detoxification5.11E-03
101GO:0009395: phospholipid catabolic process5.11E-03
102GO:0070370: cellular heat acclimation5.11E-03
103GO:0048437: floral organ development5.11E-03
104GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.11E-03
105GO:0006333: chromatin assembly or disassembly5.11E-03
106GO:0009396: folic acid-containing compound biosynthetic process5.11E-03
107GO:0006102: isocitrate metabolic process5.94E-03
108GO:0016559: peroxisome fission5.94E-03
109GO:0009061: anaerobic respiration5.94E-03
110GO:0006605: protein targeting5.94E-03
111GO:0010078: maintenance of root meristem identity5.94E-03
112GO:0010029: regulation of seed germination6.23E-03
113GO:0030968: endoplasmic reticulum unfolded protein response6.81E-03
114GO:0006972: hyperosmotic response6.81E-03
115GO:0010262: somatic embryogenesis6.81E-03
116GO:0001510: RNA methylation6.81E-03
117GO:0048573: photoperiodism, flowering6.94E-03
118GO:0009817: defense response to fungus, incompatible interaction7.70E-03
119GO:0009051: pentose-phosphate shunt, oxidative branch7.73E-03
120GO:0006098: pentose-phosphate shunt7.73E-03
121GO:0046916: cellular transition metal ion homeostasis7.73E-03
122GO:0006633: fatty acid biosynthetic process8.07E-03
123GO:0010311: lateral root formation8.09E-03
124GO:0006499: N-terminal protein myristoylation8.49E-03
125GO:0006811: ion transport8.49E-03
126GO:0035999: tetrahydrofolate interconversion8.68E-03
127GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway8.68E-03
128GO:0008202: steroid metabolic process8.68E-03
129GO:0010150: leaf senescence9.10E-03
130GO:0006535: cysteine biosynthetic process from serine9.69E-03
131GO:0006099: tricarboxylic acid cycle1.02E-02
132GO:0006378: mRNA polyadenylation1.07E-02
133GO:0010015: root morphogenesis1.07E-02
134GO:0009682: induced systemic resistance1.07E-02
135GO:0009737: response to abscisic acid1.17E-02
136GO:0006807: nitrogen compound metabolic process1.29E-02
137GO:0010102: lateral root morphogenesis1.29E-02
138GO:0006006: glucose metabolic process1.29E-02
139GO:0034605: cellular response to heat1.41E-02
140GO:0006541: glutamine metabolic process1.41E-02
141GO:0007034: vacuolar transport1.41E-02
142GO:0002237: response to molecule of bacterial origin1.41E-02
143GO:0009933: meristem structural organization1.41E-02
144GO:0090351: seedling development1.53E-02
145GO:0010030: positive regulation of seed germination1.53E-02
146GO:0009225: nucleotide-sugar metabolic process1.53E-02
147GO:0007031: peroxisome organization1.53E-02
148GO:0010167: response to nitrate1.53E-02
149GO:0005985: sucrose metabolic process1.53E-02
150GO:0006863: purine nucleobase transport1.65E-02
151GO:0000162: tryptophan biosynthetic process1.65E-02
152GO:0019344: cysteine biosynthetic process1.77E-02
153GO:0051302: regulation of cell division1.90E-02
154GO:0016575: histone deacetylation1.90E-02
155GO:0009695: jasmonic acid biosynthetic process1.90E-02
156GO:0031408: oxylipin biosynthetic process2.03E-02
157GO:0048367: shoot system development2.09E-02
158GO:0009626: plant-type hypersensitive response2.15E-02
159GO:0031348: negative regulation of defense response2.17E-02
160GO:0071456: cellular response to hypoxia2.17E-02
161GO:0030433: ubiquitin-dependent ERAD pathway2.17E-02
162GO:0035428: hexose transmembrane transport2.17E-02
163GO:0016192: vesicle-mediated transport2.22E-02
164GO:0046777: protein autophosphorylation2.27E-02
165GO:0048443: stamen development2.45E-02
166GO:0006396: RNA processing2.51E-02
167GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.60E-02
168GO:0045454: cell redox homeostasis2.61E-02
169GO:0042391: regulation of membrane potential2.74E-02
170GO:0010051: xylem and phloem pattern formation2.74E-02
171GO:0015991: ATP hydrolysis coupled proton transport2.74E-02
172GO:0042631: cellular response to water deprivation2.74E-02
173GO:0000226: microtubule cytoskeleton organization2.74E-02
174GO:0080022: primary root development2.74E-02
175GO:0010197: polar nucleus fusion2.89E-02
176GO:0010182: sugar mediated signaling pathway2.89E-02
177GO:0009960: endosperm development2.89E-02
178GO:0006520: cellular amino acid metabolic process2.89E-02
179GO:0045489: pectin biosynthetic process2.89E-02
180GO:0071472: cellular response to salt stress2.89E-02
181GO:0010154: fruit development2.89E-02
182GO:0042752: regulation of circadian rhythm3.05E-02
183GO:0009646: response to absence of light3.05E-02
184GO:0008654: phospholipid biosynthetic process3.20E-02
185GO:0009556: microsporogenesis3.20E-02
186GO:0010183: pollen tube guidance3.20E-02
187GO:0009749: response to glucose3.20E-02
188GO:0019252: starch biosynthetic process3.20E-02
189GO:0009845: seed germination3.30E-02
190GO:0010583: response to cyclopentenone3.52E-02
191GO:0009790: embryo development3.55E-02
192GO:0048364: root development3.57E-02
193GO:0071281: cellular response to iron ion3.69E-02
194GO:0009567: double fertilization forming a zygote and endosperm3.85E-02
195GO:0019760: glucosinolate metabolic process3.85E-02
196GO:0006914: autophagy3.85E-02
197GO:0051607: defense response to virus4.19E-02
198GO:0007623: circadian rhythm4.19E-02
199GO:0016126: sterol biosynthetic process4.37E-02
200GO:0009911: positive regulation of flower development4.37E-02
201GO:0009816: defense response to bacterium, incompatible interaction4.54E-02
202GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.68E-02
203GO:0009627: systemic acquired resistance4.72E-02
204GO:0042128: nitrate assimilation4.72E-02
205GO:0007166: cell surface receptor signaling pathway4.78E-02
206GO:0006950: response to stress4.90E-02
207GO:0010468: regulation of gene expression4.99E-02
RankGO TermAdjusted P value
1GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
2GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
3GO:1990446: U1 snRNP binding0.00E+00
4GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
5GO:0009045: xylose isomerase activity0.00E+00
6GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
7GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
8GO:0004370: glycerol kinase activity0.00E+00
9GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity0.00E+00
10GO:0015211: purine nucleoside transmembrane transporter activity0.00E+00
11GO:0005524: ATP binding1.11E-05
12GO:0004356: glutamate-ammonia ligase activity1.11E-04
13GO:0050897: cobalt ion binding1.63E-04
14GO:0016301: kinase activity1.95E-04
15GO:0009679: hexose:proton symporter activity3.34E-04
16GO:0035671: enone reductase activity3.34E-04
17GO:0008692: 3-hydroxybutyryl-CoA epimerase activity3.34E-04
18GO:0046870: cadmium ion binding3.34E-04
19GO:0016274: protein-arginine N-methyltransferase activity3.34E-04
20GO:0004112: cyclic-nucleotide phosphodiesterase activity3.34E-04
21GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.34E-04
22GO:0003867: 4-aminobutyrate transaminase activity3.34E-04
23GO:0030544: Hsp70 protein binding3.34E-04
24GO:0004525: ribonuclease III activity3.55E-04
25GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity5.24E-04
26GO:0001047: core promoter binding7.29E-04
27GO:0004353: glutamate dehydrogenase [NAD(P)+] activity7.29E-04
28GO:0032791: lead ion binding7.29E-04
29GO:0004609: phosphatidylserine decarboxylase activity7.29E-04
30GO:0003994: aconitate hydratase activity7.29E-04
31GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity7.29E-04
32GO:0004477: methenyltetrahydrofolate cyclohydrolase activity7.29E-04
33GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity7.29E-04
34GO:0004839: ubiquitin activating enzyme activity7.29E-04
35GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity7.29E-04
36GO:0004329: formate-tetrahydrofolate ligase activity7.29E-04
37GO:0019200: carbohydrate kinase activity7.29E-04
38GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding7.29E-04
39GO:0004352: glutamate dehydrogenase (NAD+) activity7.29E-04
40GO:0005507: copper ion binding1.05E-03
41GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.18E-03
42GO:0005047: signal recognition particle binding1.18E-03
43GO:0017150: tRNA dihydrouridine synthase activity1.18E-03
44GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity1.18E-03
45GO:0015144: carbohydrate transmembrane transporter activity1.49E-03
46GO:0004165: dodecenoyl-CoA delta-isomerase activity1.70E-03
47GO:0004300: enoyl-CoA hydratase activity1.70E-03
48GO:0048027: mRNA 5'-UTR binding1.70E-03
49GO:0015086: cadmium ion transmembrane transporter activity1.70E-03
50GO:0004108: citrate (Si)-synthase activity1.70E-03
51GO:0030527: structural constituent of chromatin1.70E-03
52GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.70E-03
53GO:0005351: sugar:proton symporter activity1.79E-03
54GO:0005509: calcium ion binding1.91E-03
55GO:0004834: tryptophan synthase activity2.28E-03
56GO:0004737: pyruvate decarboxylase activity2.28E-03
57GO:0004345: glucose-6-phosphate dehydrogenase activity2.28E-03
58GO:0043015: gamma-tubulin binding2.28E-03
59GO:0005253: anion channel activity2.28E-03
60GO:0010294: abscisic acid glucosyltransferase activity2.91E-03
61GO:0015145: monosaccharide transmembrane transporter activity2.91E-03
62GO:0008641: small protein activating enzyme activity2.91E-03
63GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.91E-03
64GO:0030976: thiamine pyrophosphate binding3.60E-03
65GO:0048040: UDP-glucuronate decarboxylase activity3.60E-03
66GO:0004629: phospholipase C activity3.60E-03
67GO:0019137: thioglucosidase activity3.60E-03
68GO:0035252: UDP-xylosyltransferase activity3.60E-03
69GO:0000293: ferric-chelate reductase activity3.60E-03
70GO:0036402: proteasome-activating ATPase activity3.60E-03
71GO:0005516: calmodulin binding3.98E-03
72GO:0004124: cysteine synthase activity4.33E-03
73GO:0070403: NAD+ binding4.33E-03
74GO:0004849: uridine kinase activity4.33E-03
75GO:0070300: phosphatidic acid binding4.33E-03
76GO:0004602: glutathione peroxidase activity4.33E-03
77GO:0003950: NAD+ ADP-ribosyltransferase activity4.33E-03
78GO:0004012: phospholipid-translocating ATPase activity4.33E-03
79GO:0004435: phosphatidylinositol phospholipase C activity4.33E-03
80GO:0004747: ribokinase activity4.33E-03
81GO:0004197: cysteine-type endopeptidase activity4.35E-03
82GO:0004620: phospholipase activity5.11E-03
83GO:0016831: carboxy-lyase activity5.11E-03
84GO:0009881: photoreceptor activity5.11E-03
85GO:0015140: malate transmembrane transporter activity5.11E-03
86GO:0004869: cysteine-type endopeptidase inhibitor activity5.94E-03
87GO:0008865: fructokinase activity5.94E-03
88GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)6.81E-03
89GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.68E-03
90GO:0008171: O-methyltransferase activity9.69E-03
91GO:0004713: protein tyrosine kinase activity9.69E-03
92GO:0047372: acylglycerol lipase activity1.07E-02
93GO:0004521: endoribonuclease activity1.18E-02
94GO:0000976: transcription regulatory region sequence-specific DNA binding1.18E-02
95GO:0016491: oxidoreductase activity1.22E-02
96GO:0004674: protein serine/threonine kinase activity1.29E-02
97GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.29E-02
98GO:0004175: endopeptidase activity1.41E-02
99GO:0004672: protein kinase activity1.50E-02
100GO:0030552: cAMP binding1.53E-02
101GO:0030553: cGMP binding1.53E-02
102GO:0017025: TBP-class protein binding1.53E-02
103GO:0004407: histone deacetylase activity1.77E-02
104GO:0043130: ubiquitin binding1.77E-02
105GO:0031625: ubiquitin protein ligase binding1.89E-02
106GO:0043424: protein histidine kinase binding1.90E-02
107GO:0005216: ion channel activity1.90E-02
108GO:0005345: purine nucleobase transmembrane transporter activity1.90E-02
109GO:0004707: MAP kinase activity2.03E-02
110GO:0005515: protein binding2.10E-02
111GO:0005249: voltage-gated potassium channel activity2.74E-02
112GO:0030551: cyclic nucleotide binding2.74E-02
113GO:0005355: glucose transmembrane transporter activity3.05E-02
114GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.13E-02
115GO:0030170: pyridoxal phosphate binding3.38E-02
116GO:0004842: ubiquitin-protein transferase activity3.67E-02
117GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.69E-02
118GO:0005200: structural constituent of cytoskeleton4.02E-02
119GO:0051213: dioxygenase activity4.37E-02
120GO:0009931: calcium-dependent protein serine/threonine kinase activity4.72E-02
121GO:0030247: polysaccharide binding4.90E-02
122GO:0004683: calmodulin-dependent protein kinase activity4.90E-02
123GO:0102483: scopolin beta-glucosidase activity4.90E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0071008: U2-type post-mRNA release spliceosomal complex0.00E+00
3GO:0031981: nuclear lumen0.00E+00
4GO:0005886: plasma membrane1.50E-06
5GO:0000323: lytic vacuole3.96E-05
6GO:0005829: cytosol2.77E-04
7GO:0042406: extrinsic component of endoplasmic reticulum membrane1.18E-03
8GO:0005849: mRNA cleavage factor complex1.70E-03
9GO:0033179: proton-transporting V-type ATPase, V0 domain2.28E-03
10GO:0005777: peroxisome2.33E-03
11GO:0005737: cytoplasm2.96E-03
12GO:0031597: cytosolic proteasome complex4.33E-03
13GO:0000815: ESCRT III complex4.33E-03
14GO:0016363: nuclear matrix4.33E-03
15GO:0031595: nuclear proteasome complex5.11E-03
16GO:0030687: preribosome, large subunit precursor5.11E-03
17GO:0030131: clathrin adaptor complex5.94E-03
18GO:0005773: vacuole6.66E-03
19GO:0005779: integral component of peroxisomal membrane6.81E-03
20GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.81E-03
21GO:0008540: proteasome regulatory particle, base subcomplex8.68E-03
22GO:0016021: integral component of membrane8.84E-03
23GO:0009705: plant-type vacuole membrane9.10E-03
24GO:0030125: clathrin vesicle coat9.69E-03
25GO:0016602: CCAAT-binding factor complex1.29E-02
26GO:0016020: membrane1.33E-02
27GO:0005764: lysosome1.41E-02
28GO:0005905: clathrin-coated pit2.03E-02
29GO:0010008: endosome membrane2.09E-02
30GO:0005783: endoplasmic reticulum2.99E-02
31GO:0031965: nuclear membrane3.20E-02
32GO:0000785: chromatin3.52E-02
33GO:0005778: peroxisomal membrane4.02E-02
34GO:0005794: Golgi apparatus4.13E-02
35GO:0005802: trans-Golgi network4.29E-02
Gene type



Gene DE type