co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904281: positive regulation of transcription from RNA polymerase V promoter	0.00E+00
2	GO:1990280: RNA localization to chromatin	0.00E+00
3	GO:1902466: positive regulation of histone H3-K27 trimethylation	7.41E-06
4	GO:1903705: positive regulation of production of siRNA involved in RNA interference	7.41E-06
5	GO:0006346: methylation-dependent chromatin silencing	7.90E-05
6	GO:0032508: DNA duplex unwinding	2.20E-04
7	GO:0044030: regulation of DNA methylation	2.52E-04
8	GO:0018107: peptidyl-threonine phosphorylation	4.64E-04
9	GO:0080188: RNA-directed DNA methylation	5.40E-04
10	GO:0034976: response to endoplasmic reticulum stress	5.80E-04
11	GO:0045492: xylan biosynthetic process	8.32E-04
12	GO:0009561: megagametogenesis	8.32E-04
13	GO:0010501: RNA secondary structure unwinding	9.19E-04
14	GO:0009791: post-embryonic development	1.06E-03
15	GO:0016579: protein deubiquitination	1.35E-03
16	GO:0009615: response to virus	1.40E-03
17	GO:0006499: N-terminal protein myristoylation	1.78E-03
18	GO:0009834: plant-type secondary cell wall biogenesis	1.78E-03
19	GO:0009631: cold acclimation	1.84E-03
20	GO:0006364: rRNA processing	2.82E-03
21	GO:0009553: embryo sac development	3.51E-03
22	GO:0018105: peptidyl-serine phosphorylation	3.66E-03
23	GO:0000398: mRNA splicing, via spliceosome	3.95E-03
24	GO:0009058: biosynthetic process	4.33E-03
25	GO:0009826: unidimensional cell growth	6.86E-03
26	GO:0046777: protein autophosphorylation	8.57E-03
27	GO:0045454: cell redox homeostasis	9.27E-03
28	GO:0035556: intracellular signal transduction	1.68E-02
29	GO:0006457: protein folding	1.94E-02
30	GO:0006511: ubiquitin-dependent protein catabolic process	2.01E-02
31	GO:0071555: cell wall organization	2.67E-02
32	GO:0009409: response to cold	3.31E-02
33	GO:0006810: transport	3.51E-02
34	GO:0046686: response to cadmium ion	3.66E-02

Rank	GO Term	Adjusted P value
1	GO:0016004: phospholipase activator activity	7.90E-05
2	GO:0008026: ATP-dependent helicase activity	1.87E-04
3	GO:0015020: glucuronosyltransferase activity	3.54E-04
4	GO:0000175: 3'-5'-exoribonuclease activity	4.64E-04
5	GO:0003729: mRNA binding	4.96E-04
6	GO:0008408: 3'-5' exonuclease activity	7.02E-04
7	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	7.02E-04
8	GO:0003756: protein disulfide isomerase activity	8.32E-04
9	GO:0003727: single-stranded RNA binding	8.32E-04
10	GO:0016853: isomerase activity	1.01E-03
11	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.10E-03
12	GO:0004004: ATP-dependent RNA helicase activity	1.56E-03
13	GO:0003676: nucleic acid binding	1.75E-03
14	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.84E-03
15	GO:0005515: protein binding	2.78E-03
16	GO:0050660: flavin adenine dinucleotide binding	7.79E-03
17	GO:0000166: nucleotide binding	1.61E-02
18	GO:0005525: GTP binding	2.30E-02

Rank	GO Term	Adjusted P value
1	GO:0005654: nucleoplasm	2.16E-04
2	GO:0046540: U4/U6 x U5 tri-snRNP complex	2.52E-04
3	GO:0090406: pollen tube	2.31E-03
4	GO:0005622: intracellular	2.55E-03
5	GO:0005634: nucleus	4.02E-03
6	GO:0031969: chloroplast membrane	8.18E-03
7	GO:0005794: Golgi apparatus	1.13E-02
8	GO:0005802: trans-Golgi network	2.26E-02
9	GO:0005768: endosome	2.47E-02
10	GO:0009536: plastid	3.08E-02
11	GO:0000139: Golgi membrane	3.31E-02
12	GO:0005730: nucleolus	3.88E-02