Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G16520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010243: response to organonitrogen compound0.00E+00
2GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
3GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
4GO:0015970: guanosine tetraphosphate biosynthetic process0.00E+00
5GO:0009877: nodulation0.00E+00
6GO:0046677: response to antibiotic0.00E+00
7GO:0007623: circadian rhythm3.43E-08
8GO:0015995: chlorophyll biosynthetic process3.05E-05
9GO:0006351: transcription, DNA-templated5.31E-05
10GO:0009723: response to ethylene9.07E-05
11GO:0043496: regulation of protein homodimerization activity1.37E-04
12GO:0000256: allantoin catabolic process1.37E-04
13GO:0050992: dimethylallyl diphosphate biosynthetic process1.37E-04
14GO:0042754: negative regulation of circadian rhythm1.37E-04
15GO:0050684: regulation of mRNA processing1.37E-04
16GO:0010017: red or far-red light signaling pathway1.99E-04
17GO:0010136: ureide catabolic process2.34E-04
18GO:0048575: short-day photoperiodism, flowering2.34E-04
19GO:1902448: positive regulation of shade avoidance2.34E-04
20GO:0006355: regulation of transcription, DNA-templated3.00E-04
21GO:0006145: purine nucleobase catabolic process3.41E-04
22GO:0015846: polyamine transport4.56E-04
23GO:2000306: positive regulation of photomorphogenesis4.56E-04
24GO:0009651: response to salt stress5.53E-04
25GO:0016123: xanthophyll biosynthetic process5.78E-04
26GO:0009658: chloroplast organization7.02E-04
27GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway7.07E-04
28GO:0045962: positive regulation of development, heterochronic7.07E-04
29GO:0055114: oxidation-reduction process7.38E-04
30GO:0000245: spliceosomal complex assembly8.44E-04
31GO:0009637: response to blue light8.69E-04
32GO:0080167: response to karrikin9.16E-04
33GO:0010114: response to red light1.10E-03
34GO:0009640: photomorphogenesis1.10E-03
35GO:0010100: negative regulation of photomorphogenesis1.29E-03
36GO:0010099: regulation of photomorphogenesis1.29E-03
37GO:0048574: long-day photoperiodism, flowering1.29E-03
38GO:0008356: asymmetric cell division1.62E-03
39GO:0009688: abscisic acid biosynthetic process1.79E-03
40GO:0009641: shade avoidance1.79E-03
41GO:0030148: sphingolipid biosynthetic process1.97E-03
42GO:0046856: phosphatidylinositol dephosphorylation1.97E-03
43GO:2000028: regulation of photoperiodism, flowering2.36E-03
44GO:0018107: peptidyl-threonine phosphorylation2.36E-03
45GO:0009718: anthocyanin-containing compound biosynthetic process2.36E-03
46GO:0009266: response to temperature stimulus2.56E-03
47GO:0090351: seedling development2.76E-03
48GO:0009416: response to light stimulus3.05E-03
49GO:0003333: amino acid transmembrane transport3.63E-03
50GO:0048511: rhythmic process3.63E-03
51GO:0006012: galactose metabolic process4.10E-03
52GO:0045492: xylan biosynthetic process4.34E-03
53GO:0070417: cellular response to cold4.58E-03
54GO:0010182: sugar mediated signaling pathway5.09E-03
55GO:0006814: sodium ion transport5.35E-03
56GO:0048366: leaf development6.43E-03
57GO:0009414: response to water deprivation7.23E-03
58GO:0044550: secondary metabolite biosynthetic process7.37E-03
59GO:0015979: photosynthesis7.73E-03
60GO:0045892: negative regulation of transcription, DNA-templated8.24E-03
61GO:0048573: photoperiodism, flowering8.50E-03
62GO:0000160: phosphorelay signal transduction system9.45E-03
63GO:0010311: lateral root formation9.45E-03
64GO:0032259: methylation9.58E-03
65GO:0010218: response to far red light9.78E-03
66GO:0006629: lipid metabolic process1.00E-02
67GO:0009408: response to heat1.00E-02
68GO:0048527: lateral root development1.01E-02
69GO:0006865: amino acid transport1.04E-02
70GO:0016051: carbohydrate biosynthetic process1.08E-02
71GO:0009409: response to cold1.10E-02
72GO:0042542: response to hydrogen peroxide1.25E-02
73GO:0051707: response to other organism1.29E-02
74GO:0009644: response to high light intensity1.36E-02
75GO:0009965: leaf morphogenesis1.40E-02
76GO:0009809: lignin biosynthetic process1.59E-02
77GO:0009585: red, far-red light phototransduction1.59E-02
78GO:0009909: regulation of flower development1.71E-02
79GO:0035556: intracellular signal transduction1.88E-02
80GO:0009737: response to abscisic acid1.95E-02
81GO:0009624: response to nematode2.04E-02
82GO:0018105: peptidyl-serine phosphorylation2.09E-02
83GO:0009790: embryo development2.68E-02
84GO:0010150: leaf senescence3.02E-02
85GO:0010228: vegetative to reproductive phase transition of meristem3.12E-02
86GO:0009739: response to gibberellin3.27E-02
87GO:0010468: regulation of gene expression3.42E-02
88GO:0006979: response to oxidative stress3.63E-02
89GO:0009733: response to auxin4.04E-02
90GO:0006970: response to osmotic stress4.34E-02
91GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.91E-02
RankGO TermAdjusted P value
1GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity0.00E+00
2GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
3GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
4GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
5GO:0052631: sphingolipid delta-8 desaturase activity5.64E-05
6GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity5.64E-05
7GO:0008728: GTP diphosphokinase activity1.37E-04
8GO:0047216: inositol 3-alpha-galactosyltransferase activity1.37E-04
9GO:0010277: chlorophyllide a oxygenase [overall] activity2.34E-04
10GO:0004848: ureidoglycolate hydrolase activity2.34E-04
11GO:0015203: polyamine transmembrane transporter activity3.41E-04
12GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen5.78E-04
13GO:0051538: 3 iron, 4 sulfur cluster binding5.78E-04
14GO:0003677: DNA binding8.42E-04
15GO:0016621: cinnamoyl-CoA reductase activity9.85E-04
16GO:0046872: metal ion binding1.20E-03
17GO:0015293: symporter activity1.23E-03
18GO:0003700: transcription factor activity, sequence-specific DNA binding1.38E-03
19GO:0000989: transcription factor activity, transcription factor binding1.45E-03
20GO:0071949: FAD binding1.45E-03
21GO:0015174: basic amino acid transmembrane transporter activity1.62E-03
22GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity1.79E-03
23GO:0019904: protein domain specific binding1.97E-03
24GO:0047372: acylglycerol lipase activity1.97E-03
25GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.16E-03
26GO:0004022: alcohol dehydrogenase (NAD) activity2.36E-03
27GO:0005315: inorganic phosphate transmembrane transporter activity2.36E-03
28GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.65E-03
29GO:0003712: transcription cofactor activity2.76E-03
30GO:0004190: aspartic-type endopeptidase activity2.76E-03
31GO:0008270: zinc ion binding3.78E-03
32GO:0008514: organic anion transmembrane transporter activity4.34E-03
33GO:0008168: methyltransferase activity5.27E-03
34GO:0050662: coenzyme binding5.35E-03
35GO:0000156: phosphorelay response regulator activity6.43E-03
36GO:0008237: metallopeptidase activity7.00E-03
37GO:0005515: protein binding1.09E-02
38GO:0004672: protein kinase activity1.22E-02
39GO:0051537: 2 iron, 2 sulfur cluster binding1.36E-02
40GO:0015171: amino acid transmembrane transporter activity1.71E-02
41GO:0016874: ligase activity1.96E-02
42GO:0016758: transferase activity, transferring hexosyl groups2.35E-02
43GO:0015144: carbohydrate transmembrane transporter activity2.73E-02
44GO:0015297: antiporter activity2.92E-02
45GO:0005351: sugar:proton symporter activity2.97E-02
46GO:0005506: iron ion binding3.55E-02
47GO:0042802: identical protein binding3.58E-02
48GO:0016491: oxidoreductase activity4.73E-02
49GO:0008233: peptidase activity4.74E-02
50GO:0004497: monooxygenase activity4.80E-02
RankGO TermAdjusted P value
1GO:0009706: chloroplast inner membrane1.96E-04
2GO:0016605: PML body2.34E-04
3GO:0030660: Golgi-associated vesicle membrane4.56E-04
4GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane4.56E-04
5GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane1.13E-03
6GO:0009535: chloroplast thylakoid membrane1.13E-03
7GO:0016604: nuclear body1.62E-03
8GO:0016607: nuclear speck1.78E-03
9GO:0005765: lysosomal membrane1.97E-03
10GO:0042651: thylakoid membrane3.40E-03
11GO:0009941: chloroplast envelope4.12E-03
12GO:0009507: chloroplast4.26E-03
13GO:0010008: endosome membrane1.83E-02
14GO:0005634: nucleus1.85E-02
15GO:0005834: heterotrimeric G-protein complex1.88E-02
16GO:0009534: chloroplast thylakoid2.15E-02
17GO:0010287: plastoglobule2.31E-02
18GO:0005768: endosome3.25E-02
19GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.40E-02
20GO:0031969: chloroplast membrane4.80E-02
Gene type



Gene DE type