GO Enrichment Analysis of Co-expressed Genes with
AT3G16290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0000373: Group II intron splicing | 5.03E-06 |
| 3 | GO:0018026: peptidyl-lysine monomethylation | 4.12E-05 |
| 4 | GO:0006568: tryptophan metabolic process | 4.12E-05 |
| 5 | GO:0046168: glycerol-3-phosphate catabolic process | 7.34E-05 |
| 6 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 7.34E-05 |
| 7 | GO:0009658: chloroplast organization | 7.88E-05 |
| 8 | GO:2001141: regulation of RNA biosynthetic process | 1.11E-04 |
| 9 | GO:0009413: response to flooding | 1.11E-04 |
| 10 | GO:0006072: glycerol-3-phosphate metabolic process | 1.11E-04 |
| 11 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.98E-04 |
| 12 | GO:0007094: mitotic spindle assembly checkpoint | 1.98E-04 |
| 13 | GO:0042793: transcription from plastid promoter | 2.47E-04 |
| 14 | GO:1904668: positive regulation of ubiquitin protein ligase activity | 2.47E-04 |
| 15 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.49E-04 |
| 16 | GO:0048564: photosystem I assembly | 4.04E-04 |
| 17 | GO:0045292: mRNA cis splicing, via spliceosome | 4.04E-04 |
| 18 | GO:0042255: ribosome assembly | 4.04E-04 |
| 19 | GO:0006353: DNA-templated transcription, termination | 4.04E-04 |
| 20 | GO:0032544: plastid translation | 4.60E-04 |
| 21 | GO:0071482: cellular response to light stimulus | 4.60E-04 |
| 22 | GO:0010206: photosystem II repair | 5.18E-04 |
| 23 | GO:1900865: chloroplast RNA modification | 5.76E-04 |
| 24 | GO:0006352: DNA-templated transcription, initiation | 7.00E-04 |
| 25 | GO:0009451: RNA modification | 7.67E-04 |
| 26 | GO:0051321: meiotic cell cycle | 1.25E-03 |
| 27 | GO:0006012: galactose metabolic process | 1.40E-03 |
| 28 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.44E-03 |
| 29 | GO:0015979: photosynthesis | 1.58E-03 |
| 30 | GO:0007018: microtubule-based movement | 1.82E-03 |
| 31 | GO:0007059: chromosome segregation | 1.82E-03 |
| 32 | GO:0080156: mitochondrial mRNA modification | 1.99E-03 |
| 33 | GO:0032502: developmental process | 2.08E-03 |
| 34 | GO:0010027: thylakoid membrane organization | 2.55E-03 |
| 35 | GO:0015995: chlorophyll biosynthetic process | 2.84E-03 |
| 36 | GO:0009637: response to blue light | 3.58E-03 |
| 37 | GO:0051301: cell division | 3.88E-03 |
| 38 | GO:0010114: response to red light | 4.25E-03 |
| 39 | GO:0006364: rRNA processing | 5.21E-03 |
| 40 | GO:0048316: seed development | 5.98E-03 |
| 41 | GO:0009790: embryo development | 8.65E-03 |
| 42 | GO:0005975: carbohydrate metabolic process | 1.09E-02 |
| 43 | GO:0008380: RNA splicing | 1.10E-02 |
| 44 | GO:0006468: protein phosphorylation | 1.27E-02 |
| 45 | GO:0032259: methylation | 1.97E-02 |
| 46 | GO:0006629: lipid metabolic process | 2.03E-02 |
| 47 | GO:0006508: proteolysis | 2.22E-02 |
| 48 | GO:0009735: response to cytokinin | 2.87E-02 |
| 49 | GO:0009416: response to light stimulus | 3.06E-02 |
| 50 | GO:0006457: protein folding | 3.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.57E-05 |
| 3 | GO:0003867: 4-aminobutyrate transaminase activity | 1.57E-05 |
| 4 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 7.34E-05 |
| 5 | GO:0016851: magnesium chelatase activity | 1.11E-04 |
| 6 | GO:0016279: protein-lysine N-methyltransferase activity | 1.53E-04 |
| 7 | GO:0001053: plastid sigma factor activity | 1.53E-04 |
| 8 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.53E-04 |
| 9 | GO:0016987: sigma factor activity | 1.53E-04 |
| 10 | GO:0004519: endonuclease activity | 2.10E-04 |
| 11 | GO:0097027: ubiquitin-protein transferase activator activity | 2.47E-04 |
| 12 | GO:0019900: kinase binding | 2.97E-04 |
| 13 | GO:0010997: anaphase-promoting complex binding | 2.97E-04 |
| 14 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 4.04E-04 |
| 15 | GO:0008312: 7S RNA binding | 4.04E-04 |
| 16 | GO:0004034: aldose 1-epimerase activity | 4.04E-04 |
| 17 | GO:0019843: rRNA binding | 5.51E-04 |
| 18 | GO:0008081: phosphoric diester hydrolase activity | 8.30E-04 |
| 19 | GO:0004176: ATP-dependent peptidase activity | 1.25E-03 |
| 20 | GO:0003727: single-stranded RNA binding | 1.48E-03 |
| 21 | GO:0016853: isomerase activity | 1.82E-03 |
| 22 | GO:0008237: metallopeptidase activity | 2.36E-03 |
| 23 | GO:0008236: serine-type peptidase activity | 2.94E-03 |
| 24 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 3.80E-03 |
| 25 | GO:0043621: protein self-association | 4.48E-03 |
| 26 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.72E-03 |
| 27 | GO:0051287: NAD binding | 4.84E-03 |
| 28 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.21E-03 |
| 29 | GO:0003690: double-stranded DNA binding | 5.34E-03 |
| 30 | GO:0003777: microtubule motor activity | 5.59E-03 |
| 31 | GO:0004674: protein serine/threonine kinase activity | 7.15E-03 |
| 32 | GO:0004252: serine-type endopeptidase activity | 8.35E-03 |
| 33 | GO:0008017: microtubule binding | 1.00E-02 |
| 34 | GO:0005524: ATP binding | 1.12E-02 |
| 35 | GO:0003723: RNA binding | 1.29E-02 |
| 36 | GO:0008168: methyltransferase activity | 1.29E-02 |
| 37 | GO:0008233: peptidase activity | 1.52E-02 |
| 38 | GO:0004871: signal transducer activity | 1.81E-02 |
| 39 | GO:0003924: GTPase activity | 2.03E-02 |
| 40 | GO:0016887: ATPase activity | 2.78E-02 |
| 41 | GO:0000166: nucleotide binding | 3.06E-02 |
| 42 | GO:0030246: carbohydrate binding | 3.78E-02 |
| 43 | GO:0005525: GTP binding | 4.36E-02 |
| 44 | GO:0005509: calcium ion binding | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.13E-09 |
| 2 | GO:0009570: chloroplast stroma | 5.13E-06 |
| 3 | GO:0009508: plastid chromosome | 1.31E-05 |
| 4 | GO:0033597: mitotic checkpoint complex | 1.57E-05 |
| 5 | GO:0080085: signal recognition particle, chloroplast targeting | 4.12E-05 |
| 6 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 4.12E-05 |
| 7 | GO:0009534: chloroplast thylakoid | 4.16E-05 |
| 8 | GO:0010007: magnesium chelatase complex | 7.34E-05 |
| 9 | GO:0009295: nucleoid | 9.01E-05 |
| 10 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 1.11E-04 |
| 11 | GO:0005828: kinetochore microtubule | 1.53E-04 |
| 12 | GO:0000776: kinetochore | 1.98E-04 |
| 13 | GO:0031977: thylakoid lumen | 2.12E-04 |
| 14 | GO:0000777: condensed chromosome kinetochore | 2.97E-04 |
| 15 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.60E-04 |
| 16 | GO:0009579: thylakoid | 5.03E-04 |
| 17 | GO:0009543: chloroplast thylakoid lumen | 5.51E-04 |
| 18 | GO:0005876: spindle microtubule | 5.76E-04 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 1.18E-03 |
| 20 | GO:0009536: plastid | 1.24E-03 |
| 21 | GO:0005871: kinesin complex | 1.56E-03 |
| 22 | GO:0019898: extrinsic component of membrane | 1.90E-03 |
| 23 | GO:0043231: intracellular membrane-bounded organelle | 2.24E-03 |
| 24 | GO:0005834: heterotrimeric G-protein complex | 6.11E-03 |
| 25 | GO:0009941: chloroplast envelope | 6.74E-03 |
| 26 | GO:0010287: plastoglobule | 7.48E-03 |
| 27 | GO:0009524: phragmoplast | 8.06E-03 |
| 28 | GO:0046658: anchored component of plasma membrane | 1.18E-02 |
| 29 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.41E-02 |
| 30 | GO:0005874: microtubule | 1.50E-02 |