co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G16270

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080056: petal vascular tissue pattern formation	0.00E+00
2	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
3	GO:0002191: cap-dependent translational initiation	0.00E+00
4	GO:0000390: spliceosomal complex disassembly	0.00E+00
5	GO:0070478: nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	0.00E+00
6	GO:0048867: stem cell fate determination	0.00E+00
7	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
8	GO:0032012: regulation of ARF protein signal transduction	3.39E-07
9	GO:0006875: cellular metal ion homeostasis	1.15E-05
10	GO:0019673: GDP-mannose metabolic process	3.64E-05
11	GO:0031338: regulation of vesicle fusion	3.64E-05
12	GO:0009846: pollen germination	4.60E-05
13	GO:0007584: response to nutrient	9.09E-05
14	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	9.09E-05
15	GO:0034398: telomere tethering at nuclear periphery	9.09E-05
16	GO:0001736: establishment of planar polarity	9.09E-05
17	GO:0032509: endosome transport via multivesicular body sorting pathway	9.09E-05
18	GO:0060149: negative regulation of posttranscriptional gene silencing	9.09E-05
19	GO:0017006: protein-tetrapyrrole linkage	1.58E-04
20	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	1.58E-04
21	GO:0090630: activation of GTPase activity	1.58E-04
22	GO:0009584: detection of visible light	2.33E-04
23	GO:0051601: exocyst localization	2.33E-04
24	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	2.33E-04
25	GO:2001289: lipid X metabolic process	2.33E-04
26	GO:0016579: protein deubiquitination	2.91E-04
27	GO:0042273: ribosomal large subunit biogenesis	3.14E-04
28	GO:0010107: potassium ion import	3.14E-04
29	GO:0034052: positive regulation of plant-type hypersensitive response	4.01E-04
30	GO:0001731: formation of translation preinitiation complex	4.92E-04
31	GO:0006751: glutathione catabolic process	4.92E-04
32	GO:0016070: RNA metabolic process	4.92E-04
33	GO:0000911: cytokinesis by cell plate formation	5.88E-04
34	GO:0009423: chorismate biosynthetic process	5.88E-04
35	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.88E-04
36	GO:0009942: longitudinal axis specification	5.88E-04
37	GO:0007155: cell adhesion	7.90E-04
38	GO:0006102: isocitrate metabolic process	7.90E-04
39	GO:0009880: embryonic pattern specification	8.97E-04
40	GO:0060321: acceptance of pollen	8.97E-04
41	GO:0010093: specification of floral organ identity	8.97E-04
42	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.24E-03
43	GO:0006913: nucleocytoplasmic transport	1.36E-03
44	GO:0006415: translational termination	1.36E-03
45	GO:0009073: aromatic amino acid family biosynthetic process	1.36E-03
46	GO:0048765: root hair cell differentiation	1.36E-03
47	GO:0000398: mRNA splicing, via spliceosome	1.38E-03
48	GO:0010152: pollen maturation	1.49E-03
49	GO:0010588: cotyledon vascular tissue pattern formation	1.62E-03
50	GO:0006446: regulation of translational initiation	1.76E-03
51	GO:0010540: basipetal auxin transport	1.76E-03
52	GO:0000162: tryptophan biosynthetic process	2.04E-03
53	GO:0006406: mRNA export from nucleus	2.18E-03
54	GO:0006874: cellular calcium ion homeostasis	2.33E-03
55	GO:0010073: meristem maintenance	2.33E-03
56	GO:0010017: red or far-red light signaling pathway	2.64E-03
57	GO:0009826: unidimensional cell growth	3.01E-03
58	GO:0051028: mRNA transport	3.13E-03
59	GO:0010087: phloem or xylem histogenesis	3.30E-03
60	GO:0010118: stomatal movement	3.30E-03
61	GO:0006606: protein import into nucleus	3.30E-03
62	GO:0010305: leaf vascular tissue pattern formation	3.47E-03
63	GO:0042752: regulation of circadian rhythm	3.64E-03
64	GO:0032502: developmental process	4.19E-03
65	GO:0006886: intracellular protein transport	4.77E-03
66	GO:0051607: defense response to virus	4.95E-03
67	GO:0001666: response to hypoxia	5.15E-03
68	GO:0006810: transport	5.90E-03
69	GO:0048481: plant ovule development	6.18E-03
70	GO:0018298: protein-chromophore linkage	6.18E-03
71	GO:0010311: lateral root formation	6.39E-03
72	GO:0009910: negative regulation of flower development	6.83E-03
73	GO:0006099: tricarboxylic acid cycle	7.51E-03
74	GO:0006839: mitochondrial transport	7.97E-03
75	GO:0006887: exocytosis	8.21E-03
76	GO:0006897: endocytosis	8.21E-03
77	GO:0000209: protein polyubiquitination	8.93E-03
78	GO:0008643: carbohydrate transport	9.17E-03
79	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.93E-03
80	GO:0006364: rRNA processing	1.07E-02
81	GO:0009585: red, far-red light phototransduction	1.07E-02
82	GO:0006417: regulation of translation	1.15E-02
83	GO:0048367: shoot system development	1.23E-02
84	GO:0009626: plant-type hypersensitive response	1.26E-02
85	GO:0006511: ubiquitin-dependent protein catabolic process	1.37E-02
86	GO:0006413: translational initiation	1.92E-02
87	GO:0016036: cellular response to phosphate starvation	1.92E-02
88	GO:0040008: regulation of growth	1.96E-02
89	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.19E-02
90	GO:0009617: response to bacterium	2.29E-02
91	GO:0015031: protein transport	2.61E-02
92	GO:0042254: ribosome biogenesis	2.80E-02
93	GO:0009860: pollen tube growth	2.91E-02
94	GO:0048366: leaf development	3.10E-02
95	GO:0016192: vesicle-mediated transport	3.34E-02
96	GO:0006869: lipid transport	3.91E-02
97	GO:0048364: root development	4.38E-02
98	GO:0006397: mRNA processing	4.38E-02
99	GO:0009793: embryo development ending in seed dormancy	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0010292: GTP:GDP antiporter activity	0.00E+00
2	GO:0098808: mRNA cap binding	0.00E+00
3	GO:1990446: U1 snRNP binding	0.00E+00
4	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
5	GO:0003729: mRNA binding	1.54E-06
6	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.60E-06
7	GO:0008446: GDP-mannose 4,6-dehydratase activity	3.64E-05
8	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	9.09E-05
9	GO:0009883: red or far-red light photoreceptor activity	9.09E-05
10	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	9.79E-05
11	GO:0019829: cation-transporting ATPase activity	1.58E-04
12	GO:0070181: small ribosomal subunit rRNA binding	1.58E-04
13	GO:0008020: G-protein coupled photoreceptor activity	1.58E-04
14	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.11E-04
15	GO:0003723: RNA binding	2.14E-04
16	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.33E-04
17	GO:0016149: translation release factor activity, codon specific	2.33E-04
18	GO:0004834: tryptophan synthase activity	3.14E-04
19	GO:0004737: pyruvate decarboxylase activity	3.14E-04
20	GO:0017137: Rab GTPase binding	4.01E-04
21	GO:0030976: thiamine pyrophosphate binding	4.92E-04
22	GO:0016831: carboxy-lyase activity	6.87E-04
23	GO:0009881: photoreceptor activity	6.87E-04
24	GO:0005085: guanyl-nucleotide exchange factor activity	6.87E-04
25	GO:0017056: structural constituent of nuclear pore	7.90E-04
26	GO:0015288: porin activity	7.90E-04
27	GO:0003724: RNA helicase activity	8.97E-04
28	GO:0005267: potassium channel activity	8.97E-04
29	GO:0003747: translation release factor activity	1.01E-03
30	GO:0005487: nucleocytoplasmic transporter activity	1.12E-03
31	GO:0003676: nucleic acid binding	1.19E-03
32	GO:0005388: calcium-transporting ATPase activity	1.62E-03
33	GO:0008139: nuclear localization sequence binding	1.62E-03
34	GO:0000155: phosphorelay sensor kinase activity	1.62E-03
35	GO:0005515: protein binding	1.87E-03
36	GO:0004176: ATP-dependent peptidase activity	2.48E-03
37	GO:0042802: identical protein binding	2.58E-03
38	GO:0008514: organic anion transmembrane transporter activity	2.96E-03
39	GO:0030276: clathrin binding	3.47E-03
40	GO:0008237: metallopeptidase activity	4.75E-03
41	GO:0042803: protein homodimerization activity	4.84E-03
42	GO:0004004: ATP-dependent RNA helicase activity	5.76E-03
43	GO:0005096: GTPase activator activity	6.39E-03
44	GO:0004222: metalloendopeptidase activity	6.61E-03
45	GO:0000149: SNARE binding	7.74E-03
46	GO:0016887: ATPase activity	8.81E-03
47	GO:0005198: structural molecule activity	9.42E-03
48	GO:0000166: nucleotide binding	1.01E-02
49	GO:0015171: amino acid transmembrane transporter activity	1.15E-02
50	GO:0008026: ATP-dependent helicase activity	1.43E-02
51	GO:0015144: carbohydrate transmembrane transporter activity	1.83E-02
52	GO:0005351: sugar:proton symporter activity	1.99E-02
53	GO:0003743: translation initiation factor activity	2.26E-02
54	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.40E-02
55	GO:0000287: magnesium ion binding	2.72E-02
56	GO:0061630: ubiquitin protein ligase activity	3.34E-02
57	GO:0004871: signal transducer activity	3.78E-02

Rank	GO Term	Adjusted P value
1	GO:0031981: nuclear lumen	0.00E+00
2	GO:0055087: Ski complex	0.00E+00
3	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
4	GO:0005829: cytosol	1.52E-05
5	GO:0044614: nuclear pore cytoplasmic filaments	1.58E-04
6	GO:0016282: eukaryotic 43S preinitiation complex	4.92E-04
7	GO:0033290: eukaryotic 48S preinitiation complex	5.88E-04
8	GO:0030687: preribosome, large subunit precursor	6.87E-04
9	GO:0032040: small-subunit processome	1.49E-03
10	GO:0005622: intracellular	3.07E-03
11	GO:0031965: nuclear membrane	3.82E-03
12	GO:0000145: exocyst	4.19E-03
13	GO:0005789: endoplasmic reticulum membrane	6.20E-03
14	GO:0031902: late endosome membrane	8.21E-03
15	GO:0005856: cytoskeleton	9.42E-03
16	GO:0005635: nuclear envelope	1.12E-02
17	GO:0005783: endoplasmic reticulum	1.16E-02
18	GO:0016607: nuclear speck	1.23E-02
19	GO:0010008: endosome membrane	1.23E-02
20	GO:0012505: endomembrane system	1.34E-02
21	GO:0005794: Golgi apparatus	1.54E-02
22	GO:0005654: nucleoplasm	1.58E-02
23	GO:0005802: trans-Golgi network	1.62E-02
24	GO:0009524: phragmoplast	1.67E-02
25	GO:0005768: endosome	1.85E-02
26	GO:0000139: Golgi membrane	2.78E-02
27	GO:0009506: plasmodesma	3.01E-02
28	GO:0022625: cytosolic large ribosomal subunit	3.34E-02
29	GO:0005730: nucleolus	3.47E-02
30	GO:0005743: mitochondrial inner membrane	4.03E-02