GO Enrichment Analysis of Co-expressed Genes with
AT3G16000
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 2 | GO:0007172: signal complex assembly | 0.00E+00 |
| 3 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 4 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 5 | GO:1904526: regulation of microtubule binding | 0.00E+00 |
| 6 | GO:0015995: chlorophyll biosynthetic process | 9.38E-10 |
| 7 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.31E-08 |
| 8 | GO:0016122: xanthophyll metabolic process | 4.79E-07 |
| 9 | GO:0006783: heme biosynthetic process | 9.72E-07 |
| 10 | GO:0015979: photosynthesis | 4.74E-05 |
| 11 | GO:0010028: xanthophyll cycle | 9.50E-05 |
| 12 | GO:0034337: RNA folding | 9.50E-05 |
| 13 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 9.50E-05 |
| 14 | GO:0005980: glycogen catabolic process | 9.50E-05 |
| 15 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.00E-04 |
| 16 | GO:0010207: photosystem II assembly | 2.13E-04 |
| 17 | GO:1901679: nucleotide transmembrane transport | 2.24E-04 |
| 18 | GO:0080121: AMP transport | 3.73E-04 |
| 19 | GO:0090391: granum assembly | 3.73E-04 |
| 20 | GO:0010306: rhamnogalacturonan II biosynthetic process | 5.37E-04 |
| 21 | GO:0042938: dipeptide transport | 7.14E-04 |
| 22 | GO:0015994: chlorophyll metabolic process | 7.14E-04 |
| 23 | GO:0015867: ATP transport | 7.14E-04 |
| 24 | GO:0010438: cellular response to sulfur starvation | 9.02E-04 |
| 25 | GO:0010117: photoprotection | 9.02E-04 |
| 26 | GO:0009759: indole glucosinolate biosynthetic process | 1.10E-03 |
| 27 | GO:0015866: ADP transport | 1.10E-03 |
| 28 | GO:0035435: phosphate ion transmembrane transport | 1.10E-03 |
| 29 | GO:0009913: epidermal cell differentiation | 1.10E-03 |
| 30 | GO:0010190: cytochrome b6f complex assembly | 1.10E-03 |
| 31 | GO:0009735: response to cytokinin | 1.26E-03 |
| 32 | GO:1901259: chloroplast rRNA processing | 1.31E-03 |
| 33 | GO:0045926: negative regulation of growth | 1.31E-03 |
| 34 | GO:0009942: longitudinal axis specification | 1.31E-03 |
| 35 | GO:0098655: cation transmembrane transport | 1.31E-03 |
| 36 | GO:0050829: defense response to Gram-negative bacterium | 1.54E-03 |
| 37 | GO:0010444: guard mother cell differentiation | 1.54E-03 |
| 38 | GO:0010492: maintenance of shoot apical meristem identity | 1.78E-03 |
| 39 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.78E-03 |
| 40 | GO:0006353: DNA-templated transcription, termination | 1.78E-03 |
| 41 | GO:0007389: pattern specification process | 2.03E-03 |
| 42 | GO:0098656: anion transmembrane transport | 2.29E-03 |
| 43 | GO:0048507: meristem development | 2.29E-03 |
| 44 | GO:0010206: photosystem II repair | 2.29E-03 |
| 45 | GO:1900865: chloroplast RNA modification | 2.56E-03 |
| 46 | GO:0031425: chloroplast RNA processing | 2.56E-03 |
| 47 | GO:0009688: abscisic acid biosynthetic process | 2.85E-03 |
| 48 | GO:0009773: photosynthetic electron transport in photosystem I | 3.14E-03 |
| 49 | GO:0002213: defense response to insect | 3.44E-03 |
| 50 | GO:0015706: nitrate transport | 3.44E-03 |
| 51 | GO:0050826: response to freezing | 3.76E-03 |
| 52 | GO:0009266: response to temperature stimulus | 4.08E-03 |
| 53 | GO:0009934: regulation of meristem structural organization | 4.08E-03 |
| 54 | GO:0000162: tryptophan biosynthetic process | 4.75E-03 |
| 55 | GO:0005992: trehalose biosynthetic process | 5.10E-03 |
| 56 | GO:0007017: microtubule-based process | 5.46E-03 |
| 57 | GO:0016998: cell wall macromolecule catabolic process | 5.83E-03 |
| 58 | GO:0045490: pectin catabolic process | 7.06E-03 |
| 59 | GO:0048868: pollen tube development | 8.21E-03 |
| 60 | GO:0009741: response to brassinosteroid | 8.21E-03 |
| 61 | GO:0008380: RNA splicing | 8.42E-03 |
| 62 | GO:0007018: microtubule-based movement | 8.63E-03 |
| 63 | GO:0048825: cotyledon development | 9.06E-03 |
| 64 | GO:0010193: response to ozone | 9.51E-03 |
| 65 | GO:0000302: response to reactive oxygen species | 9.51E-03 |
| 66 | GO:0010583: response to cyclopentenone | 9.96E-03 |
| 67 | GO:0016032: viral process | 9.96E-03 |
| 68 | GO:0010252: auxin homeostasis | 1.09E-02 |
| 69 | GO:0010411: xyloglucan metabolic process | 1.38E-02 |
| 70 | GO:0000160: phosphorelay signal transduction system | 1.54E-02 |
| 71 | GO:0007568: aging | 1.65E-02 |
| 72 | GO:0009414: response to water deprivation | 1.75E-02 |
| 73 | GO:0016051: carbohydrate biosynthetic process | 1.76E-02 |
| 74 | GO:0034599: cellular response to oxidative stress | 1.81E-02 |
| 75 | GO:0006839: mitochondrial transport | 1.93E-02 |
| 76 | GO:0006631: fatty acid metabolic process | 1.99E-02 |
| 77 | GO:0009926: auxin polar transport | 2.10E-02 |
| 78 | GO:0006397: mRNA processing | 2.10E-02 |
| 79 | GO:0042546: cell wall biogenesis | 2.16E-02 |
| 80 | GO:0006508: proteolysis | 2.28E-02 |
| 81 | GO:0009736: cytokinin-activated signaling pathway | 2.60E-02 |
| 82 | GO:0010224: response to UV-B | 2.67E-02 |
| 83 | GO:0006857: oligopeptide transport | 2.73E-02 |
| 84 | GO:0042545: cell wall modification | 3.27E-02 |
| 85 | GO:0009624: response to nematode | 3.34E-02 |
| 86 | GO:0006396: RNA processing | 3.42E-02 |
| 87 | GO:0009742: brassinosteroid mediated signaling pathway | 3.49E-02 |
| 88 | GO:0045893: positive regulation of transcription, DNA-templated | 4.08E-02 |
| 89 | GO:0009845: seed germination | 4.15E-02 |
| 90 | GO:0042744: hydrogen peroxide catabolic process | 4.30E-02 |
| 91 | GO:0055085: transmembrane transport | 4.51E-02 |
| 92 | GO:0009737: response to abscisic acid | 4.62E-02 |
| 93 | GO:0007623: circadian rhythm | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 2 | GO:0004853: uroporphyrinogen decarboxylase activity | 0.00E+00 |
| 3 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 4 | GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity | 9.50E-05 |
| 5 | GO:0008184: glycogen phosphorylase activity | 9.50E-05 |
| 6 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 9.50E-05 |
| 7 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 9.50E-05 |
| 8 | GO:0004645: phosphorylase activity | 9.50E-05 |
| 9 | GO:0016868: intramolecular transferase activity, phosphotransferases | 2.24E-04 |
| 10 | GO:0019172: glyoxalase III activity | 2.24E-04 |
| 11 | GO:0016851: magnesium chelatase activity | 5.37E-04 |
| 12 | GO:0042936: dipeptide transporter activity | 7.14E-04 |
| 13 | GO:0080122: AMP transmembrane transporter activity | 9.02E-04 |
| 14 | GO:0004130: cytochrome-c peroxidase activity | 1.10E-03 |
| 15 | GO:0004462: lactoylglutathione lyase activity | 1.10E-03 |
| 16 | GO:0015217: ADP transmembrane transporter activity | 1.31E-03 |
| 17 | GO:0005347: ATP transmembrane transporter activity | 1.31E-03 |
| 18 | GO:0004525: ribonuclease III activity | 1.78E-03 |
| 19 | GO:0009672: auxin:proton symporter activity | 2.56E-03 |
| 20 | GO:0004805: trehalose-phosphatase activity | 2.85E-03 |
| 21 | GO:0015020: glucuronosyltransferase activity | 2.85E-03 |
| 22 | GO:0047372: acylglycerol lipase activity | 3.14E-03 |
| 23 | GO:0003777: microtubule motor activity | 3.20E-03 |
| 24 | GO:0031072: heat shock protein binding | 3.76E-03 |
| 25 | GO:0015114: phosphate ion transmembrane transporter activity | 3.76E-03 |
| 26 | GO:0010329: auxin efflux transmembrane transporter activity | 3.76E-03 |
| 27 | GO:0004519: endonuclease activity | 3.96E-03 |
| 28 | GO:0033612: receptor serine/threonine kinase binding | 5.83E-03 |
| 29 | GO:0030570: pectate lyase activity | 6.58E-03 |
| 30 | GO:0003756: protein disulfide isomerase activity | 6.98E-03 |
| 31 | GO:0019901: protein kinase binding | 9.06E-03 |
| 32 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 9.51E-03 |
| 33 | GO:0000156: phosphorelay response regulator activity | 1.04E-02 |
| 34 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.14E-02 |
| 35 | GO:0005200: structural constituent of cytoskeleton | 1.14E-02 |
| 36 | GO:0003723: RNA binding | 1.17E-02 |
| 37 | GO:0016597: amino acid binding | 1.18E-02 |
| 38 | GO:0008375: acetylglucosaminyltransferase activity | 1.33E-02 |
| 39 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.38E-02 |
| 40 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.43E-02 |
| 41 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 1.87E-02 |
| 42 | GO:0005515: protein binding | 2.08E-02 |
| 43 | GO:0043621: protein self-association | 2.23E-02 |
| 44 | GO:0045330: aspartyl esterase activity | 2.80E-02 |
| 45 | GO:0016874: ligase activity | 3.20E-02 |
| 46 | GO:0030599: pectinesterase activity | 3.20E-02 |
| 47 | GO:0051082: unfolded protein binding | 3.34E-02 |
| 48 | GO:0019843: rRNA binding | 3.92E-02 |
| 49 | GO:0016829: lyase activity | 4.15E-02 |
| 50 | GO:0004252: serine-type endopeptidase activity | 4.23E-02 |
| 51 | GO:0030170: pyridoxal phosphate binding | 4.23E-02 |
| 52 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.69E-02 |
| 53 | GO:0046910: pectinesterase inhibitor activity | 4.69E-02 |
| 54 | GO:0016301: kinase activity | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098572: stromal side of plastid thylakoid membrane | 0.00E+00 |
| 2 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.04E-17 |
| 4 | GO:0009534: chloroplast thylakoid | 3.60E-15 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.57E-12 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 7.43E-11 |
| 7 | GO:0009579: thylakoid | 5.35E-06 |
| 8 | GO:0009538: photosystem I reaction center | 5.25E-05 |
| 9 | GO:0031977: thylakoid lumen | 1.85E-04 |
| 10 | GO:0009508: plastid chromosome | 1.88E-04 |
| 11 | GO:0030095: chloroplast photosystem II | 2.13E-04 |
| 12 | GO:0030093: chloroplast photosystem I | 2.24E-04 |
| 13 | GO:0009570: chloroplast stroma | 2.44E-04 |
| 14 | GO:0009941: chloroplast envelope | 3.73E-04 |
| 15 | GO:0010007: magnesium chelatase complex | 3.73E-04 |
| 16 | GO:0009522: photosystem I | 6.38E-04 |
| 17 | GO:0009517: PSII associated light-harvesting complex II | 7.14E-04 |
| 18 | GO:0009295: nucleoid | 9.27E-04 |
| 19 | GO:0042644: chloroplast nucleoid | 2.29E-03 |
| 20 | GO:0045298: tubulin complex | 2.29E-03 |
| 21 | GO:0032040: small-subunit processome | 3.44E-03 |
| 22 | GO:0010287: plastoglobule | 4.85E-03 |
| 23 | GO:0005871: kinesin complex | 7.38E-03 |
| 24 | GO:0071944: cell periphery | 1.04E-02 |
| 25 | GO:0016020: membrane | 1.07E-02 |
| 26 | GO:0030529: intracellular ribonucleoprotein complex | 1.23E-02 |
| 27 | GO:0005874: microtubule | 1.31E-02 |
| 28 | GO:0031969: chloroplast membrane | 1.36E-02 |
| 29 | GO:0000325: plant-type vacuole | 1.65E-02 |
| 30 | GO:0009706: chloroplast inner membrane | 3.34E-02 |