GO Enrichment Analysis of Co-expressed Genes with
AT3G15900
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 2 | GO:0090393: sepal giant cell development | 0.00E+00 |
| 3 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 4 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 5 | GO:2001294: malonyl-CoA catabolic process | 0.00E+00 |
| 6 | GO:0019253: reductive pentose-phosphate cycle | 5.33E-10 |
| 7 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.00E-08 |
| 8 | GO:0006094: gluconeogenesis | 5.13E-08 |
| 9 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 5.86E-07 |
| 10 | GO:0006000: fructose metabolic process | 2.22E-06 |
| 11 | GO:0046686: response to cadmium ion | 2.71E-06 |
| 12 | GO:0009773: photosynthetic electron transport in photosystem I | 3.07E-06 |
| 13 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.07E-06 |
| 14 | GO:0019464: glycine decarboxylation via glycine cleavage system | 9.95E-06 |
| 15 | GO:0006546: glycine catabolic process | 9.95E-06 |
| 16 | GO:0006021: inositol biosynthetic process | 9.95E-06 |
| 17 | GO:0009658: chloroplast organization | 3.03E-05 |
| 18 | GO:0006096: glycolytic process | 3.75E-05 |
| 19 | GO:0080167: response to karrikin | 4.94E-05 |
| 20 | GO:0006002: fructose 6-phosphate metabolic process | 7.89E-05 |
| 21 | GO:0006098: pentose-phosphate shunt | 9.74E-05 |
| 22 | GO:1901349: glucosinolate transport | 1.06E-04 |
| 23 | GO:0090449: phloem glucosinolate loading | 1.06E-04 |
| 24 | GO:0051775: response to redox state | 1.06E-04 |
| 25 | GO:0006659: phosphatidylserine biosynthetic process | 1.06E-04 |
| 26 | GO:0006810: transport | 1.24E-04 |
| 27 | GO:0009853: photorespiration | 1.78E-04 |
| 28 | GO:0005986: sucrose biosynthetic process | 2.19E-04 |
| 29 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 2.48E-04 |
| 30 | GO:0015786: UDP-glucose transport | 2.48E-04 |
| 31 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.14E-04 |
| 32 | GO:0006011: UDP-glucose metabolic process | 4.12E-04 |
| 33 | GO:0006753: nucleoside phosphate metabolic process | 4.12E-04 |
| 34 | GO:0071492: cellular response to UV-A | 4.12E-04 |
| 35 | GO:0006696: ergosterol biosynthetic process | 4.12E-04 |
| 36 | GO:0005977: glycogen metabolic process | 4.12E-04 |
| 37 | GO:0015783: GDP-fucose transport | 4.12E-04 |
| 38 | GO:0015979: photosynthesis | 5.20E-04 |
| 39 | GO:0006166: purine ribonucleoside salvage | 5.92E-04 |
| 40 | GO:0006020: inositol metabolic process | 5.92E-04 |
| 41 | GO:0006107: oxaloacetate metabolic process | 5.92E-04 |
| 42 | GO:0072334: UDP-galactose transmembrane transport | 5.92E-04 |
| 43 | GO:0006168: adenine salvage | 5.92E-04 |
| 44 | GO:0032877: positive regulation of DNA endoreduplication | 5.92E-04 |
| 45 | GO:0042631: cellular response to water deprivation | 6.38E-04 |
| 46 | GO:0007059: chromosome segregation | 7.35E-04 |
| 47 | GO:0019676: ammonia assimilation cycle | 7.86E-04 |
| 48 | GO:0015976: carbon utilization | 7.86E-04 |
| 49 | GO:0071486: cellular response to high light intensity | 7.86E-04 |
| 50 | GO:0009765: photosynthesis, light harvesting | 7.86E-04 |
| 51 | GO:0045727: positive regulation of translation | 7.86E-04 |
| 52 | GO:2000122: negative regulation of stomatal complex development | 7.86E-04 |
| 53 | GO:0006734: NADH metabolic process | 7.86E-04 |
| 54 | GO:0009902: chloroplast relocation | 7.86E-04 |
| 55 | GO:0010037: response to carbon dioxide | 7.86E-04 |
| 56 | GO:0006542: glutamine biosynthetic process | 7.86E-04 |
| 57 | GO:0009791: post-embryonic development | 7.87E-04 |
| 58 | GO:0044209: AMP salvage | 9.92E-04 |
| 59 | GO:0006656: phosphatidylcholine biosynthetic process | 9.92E-04 |
| 60 | GO:0043097: pyrimidine nucleoside salvage | 9.92E-04 |
| 61 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 1.21E-03 |
| 62 | GO:0016554: cytidine to uridine editing | 1.21E-03 |
| 63 | GO:0006206: pyrimidine nucleobase metabolic process | 1.21E-03 |
| 64 | GO:0046855: inositol phosphate dephosphorylation | 1.21E-03 |
| 65 | GO:0010942: positive regulation of cell death | 1.21E-03 |
| 66 | GO:0009854: oxidative photosynthetic carbon pathway | 1.45E-03 |
| 67 | GO:0010196: nonphotochemical quenching | 1.70E-03 |
| 68 | GO:0015937: coenzyme A biosynthetic process | 1.70E-03 |
| 69 | GO:0052543: callose deposition in cell wall | 1.97E-03 |
| 70 | GO:0048564: photosystem I assembly | 1.97E-03 |
| 71 | GO:0009409: response to cold | 2.09E-03 |
| 72 | GO:0071482: cellular response to light stimulus | 2.24E-03 |
| 73 | GO:0022900: electron transport chain | 2.24E-03 |
| 74 | GO:0032544: plastid translation | 2.24E-03 |
| 75 | GO:1900865: chloroplast RNA modification | 2.84E-03 |
| 76 | GO:0006259: DNA metabolic process | 3.15E-03 |
| 77 | GO:0006265: DNA topological change | 3.47E-03 |
| 78 | GO:0043085: positive regulation of catalytic activity | 3.47E-03 |
| 79 | GO:0000272: polysaccharide catabolic process | 3.47E-03 |
| 80 | GO:0006790: sulfur compound metabolic process | 3.81E-03 |
| 81 | GO:0009725: response to hormone | 4.16E-03 |
| 82 | GO:0009767: photosynthetic electron transport chain | 4.16E-03 |
| 83 | GO:0006108: malate metabolic process | 4.16E-03 |
| 84 | GO:0009887: animal organ morphogenesis | 4.52E-03 |
| 85 | GO:0042343: indole glucosinolate metabolic process | 4.88E-03 |
| 86 | GO:0005985: sucrose metabolic process | 4.88E-03 |
| 87 | GO:0046854: phosphatidylinositol phosphorylation | 4.88E-03 |
| 88 | GO:0009833: plant-type primary cell wall biogenesis | 5.26E-03 |
| 89 | GO:0042742: defense response to bacterium | 5.29E-03 |
| 90 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.05E-03 |
| 91 | GO:0098542: defense response to other organism | 6.46E-03 |
| 92 | GO:0061077: chaperone-mediated protein folding | 6.46E-03 |
| 93 | GO:0016226: iron-sulfur cluster assembly | 6.87E-03 |
| 94 | GO:0030433: ubiquitin-dependent ERAD pathway | 6.87E-03 |
| 95 | GO:0019722: calcium-mediated signaling | 7.74E-03 |
| 96 | GO:0009735: response to cytokinin | 7.96E-03 |
| 97 | GO:0016117: carotenoid biosynthetic process | 8.19E-03 |
| 98 | GO:0055114: oxidation-reduction process | 8.28E-03 |
| 99 | GO:0006662: glycerol ether metabolic process | 9.10E-03 |
| 100 | GO:0005975: carbohydrate metabolic process | 9.95E-03 |
| 101 | GO:0019252: starch biosynthetic process | 1.01E-02 |
| 102 | GO:0008654: phospholipid biosynthetic process | 1.01E-02 |
| 103 | GO:0007264: small GTPase mediated signal transduction | 1.11E-02 |
| 104 | GO:1901657: glycosyl compound metabolic process | 1.16E-02 |
| 105 | GO:0055085: transmembrane transport | 1.21E-02 |
| 106 | GO:0007267: cell-cell signaling | 1.26E-02 |
| 107 | GO:0051607: defense response to virus | 1.31E-02 |
| 108 | GO:0010027: thylakoid membrane organization | 1.37E-02 |
| 109 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.42E-02 |
| 110 | GO:0009817: defense response to fungus, incompatible interaction | 1.65E-02 |
| 111 | GO:0018298: protein-chromophore linkage | 1.65E-02 |
| 112 | GO:0010218: response to far red light | 1.77E-02 |
| 113 | GO:0010119: regulation of stomatal movement | 1.83E-02 |
| 114 | GO:0007568: aging | 1.83E-02 |
| 115 | GO:0045454: cell redox homeostasis | 1.89E-02 |
| 116 | GO:0016051: carbohydrate biosynthetic process | 1.95E-02 |
| 117 | GO:0009637: response to blue light | 1.95E-02 |
| 118 | GO:0006099: tricarboxylic acid cycle | 2.02E-02 |
| 119 | GO:0034599: cellular response to oxidative stress | 2.02E-02 |
| 120 | GO:0032259: methylation | 2.23E-02 |
| 121 | GO:0008283: cell proliferation | 2.34E-02 |
| 122 | GO:0010114: response to red light | 2.34E-02 |
| 123 | GO:0009744: response to sucrose | 2.34E-02 |
| 124 | GO:0000209: protein polyubiquitination | 2.41E-02 |
| 125 | GO:0009644: response to high light intensity | 2.47E-02 |
| 126 | GO:0008152: metabolic process | 2.57E-02 |
| 127 | GO:0006364: rRNA processing | 2.89E-02 |
| 128 | GO:0006857: oligopeptide transport | 3.04E-02 |
| 129 | GO:0042545: cell wall modification | 3.64E-02 |
| 130 | GO:0009624: response to nematode | 3.72E-02 |
| 131 | GO:0009611: response to wounding | 4.22E-02 |
| 132 | GO:0009058: biosynthetic process | 4.53E-02 |
| 133 | GO:0009845: seed germination | 4.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051738: xanthophyll binding | 0.00E+00 |
| 2 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 3 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 4 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 5 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 6 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 7 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 8 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 9 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 10 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 11 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 12 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.96E-08 |
| 13 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 5.86E-07 |
| 14 | GO:0004618: phosphoglycerate kinase activity | 5.86E-07 |
| 15 | GO:0048038: quinone binding | 1.26E-06 |
| 16 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 5.26E-06 |
| 17 | GO:0004332: fructose-bisphosphate aldolase activity | 2.49E-05 |
| 18 | GO:0016168: chlorophyll binding | 9.36E-05 |
| 19 | GO:0051996: squalene synthase activity | 1.06E-04 |
| 20 | GO:0010945: CoA pyrophosphatase activity | 1.06E-04 |
| 21 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.06E-04 |
| 22 | GO:0090448: glucosinolate:proton symporter activity | 1.06E-04 |
| 23 | GO:0004047: aminomethyltransferase activity | 2.48E-04 |
| 24 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.48E-04 |
| 25 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.48E-04 |
| 26 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.48E-04 |
| 27 | GO:0004512: inositol-3-phosphate synthase activity | 2.48E-04 |
| 28 | GO:0008967: phosphoglycolate phosphatase activity | 2.48E-04 |
| 29 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 2.48E-04 |
| 30 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 2.48E-04 |
| 31 | GO:0042389: omega-3 fatty acid desaturase activity | 2.48E-04 |
| 32 | GO:0010297: heteropolysaccharide binding | 2.48E-04 |
| 33 | GO:0032947: protein complex scaffold | 4.12E-04 |
| 34 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.12E-04 |
| 35 | GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity | 4.12E-04 |
| 36 | GO:0005457: GDP-fucose transmembrane transporter activity | 4.12E-04 |
| 37 | GO:0022891: substrate-specific transmembrane transporter activity | 5.04E-04 |
| 38 | GO:0003999: adenine phosphoribosyltransferase activity | 5.92E-04 |
| 39 | GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | 5.92E-04 |
| 40 | GO:0005460: UDP-glucose transmembrane transporter activity | 5.92E-04 |
| 41 | GO:0008453: alanine-glyoxylate transaminase activity | 7.86E-04 |
| 42 | GO:0005459: UDP-galactose transmembrane transporter activity | 9.92E-04 |
| 43 | GO:0004356: glutamate-ammonia ligase activity | 9.92E-04 |
| 44 | GO:0080030: methyl indole-3-acetate esterase activity | 1.21E-03 |
| 45 | GO:0042578: phosphoric ester hydrolase activity | 1.21E-03 |
| 46 | GO:0000210: NAD+ diphosphatase activity | 1.21E-03 |
| 47 | GO:0016615: malate dehydrogenase activity | 1.21E-03 |
| 48 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 1.45E-03 |
| 49 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.45E-03 |
| 50 | GO:0030060: L-malate dehydrogenase activity | 1.45E-03 |
| 51 | GO:0004849: uridine kinase activity | 1.45E-03 |
| 52 | GO:0008135: translation factor activity, RNA binding | 2.24E-03 |
| 53 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.24E-03 |
| 54 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 2.24E-03 |
| 55 | GO:0008047: enzyme activator activity | 3.15E-03 |
| 56 | GO:0004860: protein kinase inhibitor activity | 3.47E-03 |
| 57 | GO:0004089: carbonate dehydratase activity | 4.16E-03 |
| 58 | GO:0008083: growth factor activity | 4.52E-03 |
| 59 | GO:0008266: poly(U) RNA binding | 4.52E-03 |
| 60 | GO:0016787: hydrolase activity | 4.66E-03 |
| 61 | GO:0031409: pigment binding | 5.26E-03 |
| 62 | GO:0005528: FK506 binding | 5.65E-03 |
| 63 | GO:0051536: iron-sulfur cluster binding | 5.65E-03 |
| 64 | GO:0047134: protein-disulfide reductase activity | 8.19E-03 |
| 65 | GO:0008080: N-acetyltransferase activity | 9.10E-03 |
| 66 | GO:0004791: thioredoxin-disulfide reductase activity | 9.58E-03 |
| 67 | GO:0050662: coenzyme binding | 9.58E-03 |
| 68 | GO:0004872: receptor activity | 1.01E-02 |
| 69 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.16E-02 |
| 70 | GO:0008483: transaminase activity | 1.26E-02 |
| 71 | GO:0102483: scopolin beta-glucosidase activity | 1.54E-02 |
| 72 | GO:0004222: metalloendopeptidase activity | 1.77E-02 |
| 73 | GO:0050897: cobalt ion binding | 1.83E-02 |
| 74 | GO:0003746: translation elongation factor activity | 1.95E-02 |
| 75 | GO:0004871: signal transducer activity | 1.98E-02 |
| 76 | GO:0008422: beta-glucosidase activity | 2.08E-02 |
| 77 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.47E-02 |
| 78 | GO:0009055: electron carrier activity | 2.50E-02 |
| 79 | GO:0005198: structural molecule activity | 2.54E-02 |
| 80 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.61E-02 |
| 81 | GO:0051287: NAD binding | 2.68E-02 |
| 82 | GO:0031625: ubiquitin protein ligase binding | 3.11E-02 |
| 83 | GO:0045330: aspartyl esterase activity | 3.11E-02 |
| 84 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.33E-02 |
| 85 | GO:0030599: pectinesterase activity | 3.56E-02 |
| 86 | GO:0022857: transmembrane transporter activity | 3.56E-02 |
| 87 | GO:0015035: protein disulfide oxidoreductase activity | 3.80E-02 |
| 88 | GO:0016746: transferase activity, transferring acyl groups | 3.80E-02 |
| 89 | GO:0016758: transferase activity, transferring hexosyl groups | 4.28E-02 |
| 90 | GO:0019843: rRNA binding | 4.36E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.53E-26 |
| 2 | GO:0009570: chloroplast stroma | 4.42E-14 |
| 3 | GO:0009579: thylakoid | 6.13E-12 |
| 4 | GO:0048046: apoplast | 1.07E-11 |
| 5 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.49E-11 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 7.07E-11 |
| 7 | GO:0009941: chloroplast envelope | 7.63E-10 |
| 8 | GO:0010319: stromule | 2.24E-06 |
| 9 | GO:0010287: plastoglobule | 4.13E-06 |
| 10 | GO:0005960: glycine cleavage complex | 5.26E-06 |
| 11 | GO:0009534: chloroplast thylakoid | 8.99E-06 |
| 12 | GO:0009523: photosystem II | 4.38E-05 |
| 13 | GO:0009344: nitrite reductase complex [NAD(P)H] | 1.06E-04 |
| 14 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.48E-04 |
| 15 | GO:0042170: plastid membrane | 2.48E-04 |
| 16 | GO:0016020: membrane | 2.50E-04 |
| 17 | GO:0009706: chloroplast inner membrane | 5.89E-04 |
| 18 | GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing) | 7.86E-04 |
| 19 | GO:0009517: PSII associated light-harvesting complex II | 7.86E-04 |
| 20 | GO:0031969: chloroplast membrane | 2.63E-03 |
| 21 | GO:0005765: lysosomal membrane | 3.47E-03 |
| 22 | GO:0031012: extracellular matrix | 4.16E-03 |
| 23 | GO:0019013: viral nucleocapsid | 4.16E-03 |
| 24 | GO:0030095: chloroplast photosystem II | 4.52E-03 |
| 25 | GO:0030076: light-harvesting complex | 4.88E-03 |
| 26 | GO:0009543: chloroplast thylakoid lumen | 5.94E-03 |
| 27 | GO:0009654: photosystem II oxygen evolving complex | 6.05E-03 |
| 28 | GO:0042651: thylakoid membrane | 6.05E-03 |
| 29 | GO:0022626: cytosolic ribosome | 8.42E-03 |
| 30 | GO:0009522: photosystem I | 9.58E-03 |
| 31 | GO:0019898: extrinsic component of membrane | 1.01E-02 |
| 32 | GO:0005777: peroxisome | 1.06E-02 |
| 33 | GO:0009295: nucleoid | 1.26E-02 |
| 34 | GO:0005778: peroxisomal membrane | 1.26E-02 |
| 35 | GO:0009707: chloroplast outer membrane | 1.65E-02 |
| 36 | GO:0005819: spindle | 2.08E-02 |
| 37 | GO:0031902: late endosome membrane | 2.21E-02 |
| 38 | GO:0031977: thylakoid lumen | 2.21E-02 |
| 39 | GO:0016021: integral component of membrane | 3.04E-02 |
| 40 | GO:0005747: mitochondrial respiratory chain complex I | 3.33E-02 |
| 41 | GO:0005623: cell | 4.45E-02 |