Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G15850

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042493: response to drug0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0042820: vitamin B6 catabolic process0.00E+00
5GO:0009773: photosynthetic electron transport in photosystem I9.10E-13
6GO:0015979: photosynthesis2.92E-09
7GO:0010027: thylakoid membrane organization1.30E-07
8GO:0090391: granum assembly1.67E-05
9GO:0080170: hydrogen peroxide transmembrane transport3.71E-05
10GO:0010207: photosystem II assembly7.75E-05
11GO:0016120: carotene biosynthetic process1.04E-04
12GO:0010196: nonphotochemical quenching2.67E-04
13GO:0000481: maturation of 5S rRNA3.22E-04
14GO:1904964: positive regulation of phytol biosynthetic process3.22E-04
15GO:0033481: galacturonate biosynthetic process3.22E-04
16GO:0042371: vitamin K biosynthetic process3.22E-04
17GO:1902458: positive regulation of stomatal opening3.22E-04
18GO:0034337: RNA folding3.22E-04
19GO:0071588: hydrogen peroxide mediated signaling pathway3.22E-04
20GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.22E-04
21GO:0009443: pyridoxal 5'-phosphate salvage3.22E-04
22GO:0046520: sphingoid biosynthetic process3.22E-04
23GO:1904966: positive regulation of vitamin E biosynthetic process3.22E-04
24GO:0071277: cellular response to calcium ion3.22E-04
25GO:0006810: transport5.06E-04
26GO:0001736: establishment of planar polarity7.02E-04
27GO:1903426: regulation of reactive oxygen species biosynthetic process7.02E-04
28GO:0010024: phytochromobilin biosynthetic process7.02E-04
29GO:0043255: regulation of carbohydrate biosynthetic process7.02E-04
30GO:1902326: positive regulation of chlorophyll biosynthetic process7.02E-04
31GO:0010115: regulation of abscisic acid biosynthetic process7.02E-04
32GO:0009658: chloroplast organization7.23E-04
33GO:0042254: ribosome biogenesis7.47E-04
34GO:0000038: very long-chain fatty acid metabolic process7.88E-04
35GO:0018298: protein-chromophore linkage9.92E-04
36GO:0010143: cutin biosynthetic process1.14E-03
37GO:0015714: phosphoenolpyruvate transport1.14E-03
38GO:0006954: inflammatory response1.14E-03
39GO:0006788: heme oxidation1.14E-03
40GO:0006518: peptide metabolic process1.14E-03
41GO:0009735: response to cytokinin1.32E-03
42GO:0010025: wax biosynthetic process1.42E-03
43GO:0006633: fatty acid biosynthetic process1.47E-03
44GO:0009416: response to light stimulus1.58E-03
45GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.63E-03
46GO:0071484: cellular response to light intensity1.63E-03
47GO:0009800: cinnamic acid biosynthetic process1.63E-03
48GO:0009650: UV protection1.63E-03
49GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.63E-03
50GO:0009926: auxin polar transport1.84E-03
51GO:0016998: cell wall macromolecule catabolic process1.91E-03
52GO:0010037: response to carbon dioxide2.19E-03
53GO:0015976: carbon utilization2.19E-03
54GO:0045727: positive regulation of translation2.19E-03
55GO:0015994: chlorophyll metabolic process2.19E-03
56GO:2000122: negative regulation of stomatal complex development2.19E-03
57GO:0030104: water homeostasis2.19E-03
58GO:0031122: cytoplasmic microtubule organization2.19E-03
59GO:0015713: phosphoglycerate transport2.19E-03
60GO:0009306: protein secretion2.47E-03
61GO:0006564: L-serine biosynthetic process2.80E-03
62GO:0010236: plastoquinone biosynthetic process2.80E-03
63GO:0045038: protein import into chloroplast thylakoid membrane2.80E-03
64GO:0006461: protein complex assembly2.80E-03
65GO:0080110: sporopollenin biosynthetic process2.80E-03
66GO:0034220: ion transmembrane transport2.89E-03
67GO:0042335: cuticle development2.89E-03
68GO:0010182: sugar mediated signaling pathway3.12E-03
69GO:0006561: proline biosynthetic process3.46E-03
70GO:0048759: xylem vessel member cell differentiation3.46E-03
71GO:0010405: arabinogalactan protein metabolic process3.46E-03
72GO:0006751: glutathione catabolic process3.46E-03
73GO:0042549: photosystem II stabilization3.46E-03
74GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.46E-03
75GO:0009913: epidermal cell differentiation3.46E-03
76GO:0006559: L-phenylalanine catabolic process3.46E-03
77GO:0006086: acetyl-CoA biosynthetic process from pyruvate3.46E-03
78GO:0010337: regulation of salicylic acid metabolic process3.46E-03
79GO:0006596: polyamine biosynthetic process3.46E-03
80GO:0018258: protein O-linked glycosylation via hydroxyproline3.46E-03
81GO:0009409: response to cold3.90E-03
82GO:0055114: oxidation-reduction process4.06E-03
83GO:0010189: vitamin E biosynthetic process4.17E-03
84GO:0010019: chloroplast-nucleus signaling pathway4.17E-03
85GO:0042372: phylloquinone biosynthetic process4.17E-03
86GO:0006694: steroid biosynthetic process4.17E-03
87GO:0006400: tRNA modification4.92E-03
88GO:0009395: phospholipid catabolic process4.92E-03
89GO:0009772: photosynthetic electron transport in photosystem II4.92E-03
90GO:0030497: fatty acid elongation4.92E-03
91GO:1900057: positive regulation of leaf senescence4.92E-03
92GO:0010444: guard mother cell differentiation4.92E-03
93GO:0050829: defense response to Gram-negative bacterium4.92E-03
94GO:0009704: de-etiolation5.71E-03
95GO:0032508: DNA duplex unwinding5.71E-03
96GO:2000070: regulation of response to water deprivation5.71E-03
97GO:0008610: lipid biosynthetic process5.71E-03
98GO:0030091: protein repair5.71E-03
99GO:0042255: ribosome assembly5.71E-03
100GO:0046620: regulation of organ growth5.71E-03
101GO:0006605: protein targeting5.71E-03
102GO:0071555: cell wall organization6.37E-03
103GO:0032544: plastid translation6.55E-03
104GO:0009808: lignin metabolic process6.55E-03
105GO:0015996: chlorophyll catabolic process6.55E-03
106GO:0007186: G-protein coupled receptor signaling pathway6.55E-03
107GO:0009657: plastid organization6.55E-03
108GO:0015995: chlorophyll biosynthetic process6.56E-03
109GO:0010411: xyloglucan metabolic process6.56E-03
110GO:0010206: photosystem II repair7.42E-03
111GO:0090333: regulation of stomatal closure7.42E-03
112GO:0010205: photoinhibition8.34E-03
113GO:0009638: phototropism8.34E-03
114GO:0009688: abscisic acid biosynthetic process9.30E-03
115GO:0048829: root cap development9.30E-03
116GO:0019538: protein metabolic process9.30E-03
117GO:0006032: chitin catabolic process9.30E-03
118GO:0009750: response to fructose1.03E-02
119GO:0018119: peptidyl-cysteine S-nitrosylation1.03E-02
120GO:0048765: root hair cell differentiation1.03E-02
121GO:0009073: aromatic amino acid family biosynthetic process1.03E-02
122GO:0016024: CDP-diacylglycerol biosynthetic process1.13E-02
123GO:0045037: protein import into chloroplast stroma1.13E-02
124GO:0006006: glucose metabolic process1.24E-02
125GO:0042546: cell wall biogenesis1.24E-02
126GO:0009718: anthocyanin-containing compound biosynthetic process1.24E-02
127GO:0009725: response to hormone1.24E-02
128GO:0010628: positive regulation of gene expression1.24E-02
129GO:0019253: reductive pentose-phosphate cycle1.35E-02
130GO:0010053: root epidermal cell differentiation1.46E-02
131GO:0009225: nucleotide-sugar metabolic process1.46E-02
132GO:0009825: multidimensional cell growth1.46E-02
133GO:0010167: response to nitrate1.46E-02
134GO:0071732: cellular response to nitric oxide1.46E-02
135GO:0006833: water transport1.58E-02
136GO:0006636: unsaturated fatty acid biosynthetic process1.58E-02
137GO:0006487: protein N-linked glycosylation1.70E-02
138GO:0000027: ribosomal large subunit assembly1.70E-02
139GO:0007017: microtubule-based process1.83E-02
140GO:0009768: photosynthesis, light harvesting in photosystem I1.83E-02
141GO:0006096: glycolytic process1.91E-02
142GO:0080167: response to karrikin1.94E-02
143GO:0003333: amino acid transmembrane transport1.95E-02
144GO:0048511: rhythmic process1.95E-02
145GO:0061077: chaperone-mediated protein folding1.95E-02
146GO:0030245: cellulose catabolic process2.08E-02
147GO:0009411: response to UV2.22E-02
148GO:0071369: cellular response to ethylene stimulus2.22E-02
149GO:0010584: pollen exine formation2.35E-02
150GO:0042127: regulation of cell proliferation2.35E-02
151GO:0045454: cell redox homeostasis2.43E-02
152GO:0016117: carotenoid biosynthetic process2.49E-02
153GO:0010087: phloem or xylem histogenesis2.63E-02
154GO:0006869: lipid transport2.73E-02
155GO:0009958: positive gravitropism2.78E-02
156GO:0055085: transmembrane transport2.82E-02
157GO:0015986: ATP synthesis coupled proton transport2.92E-02
158GO:0042752: regulation of circadian rhythm2.92E-02
159GO:0032259: methylation2.99E-02
160GO:0016042: lipid catabolic process3.05E-02
161GO:0016132: brassinosteroid biosynthetic process3.23E-02
162GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.23E-02
163GO:0071554: cell wall organization or biogenesis3.23E-02
164GO:0002229: defense response to oomycetes3.23E-02
165GO:0000302: response to reactive oxygen species3.23E-02
166GO:0032502: developmental process3.38E-02
167GO:1901657: glycosyl compound metabolic process3.54E-02
168GO:0071281: cellular response to iron ion3.54E-02
169GO:0019760: glucosinolate metabolic process3.70E-02
170GO:0016126: sterol biosynthetic process4.19E-02
171GO:0042128: nitrate assimilation4.53E-02
172GO:0016311: dephosphorylation4.88E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
3GO:1990534: thermospermine oxidase activity0.00E+00
4GO:0050614: delta24-sterol reductase activity0.00E+00
5GO:0045436: lycopene beta cyclase activity0.00E+00
6GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
7GO:0010301: xanthoxin dehydrogenase activity0.00E+00
8GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
9GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
10GO:0010487: thermospermine synthase activity0.00E+00
11GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
12GO:0005528: FK506 binding1.06E-07
13GO:0019843: rRNA binding1.44E-06
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.64E-05
15GO:0016768: spermine synthase activity3.22E-04
16GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.22E-04
17GO:0000170: sphingosine hydroxylase activity3.22E-04
18GO:0030794: (S)-coclaurine-N-methyltransferase activity3.22E-04
19GO:0015121: phosphoenolpyruvate:phosphate antiporter activity3.22E-04
20GO:0008568: microtubule-severing ATPase activity3.22E-04
21GO:0045485: omega-6 fatty acid desaturase activity3.22E-04
22GO:0047746: chlorophyllase activity7.02E-04
23GO:0003839: gamma-glutamylcyclotransferase activity7.02E-04
24GO:0004617: phosphoglycerate dehydrogenase activity7.02E-04
25GO:0042284: sphingolipid delta-4 desaturase activity7.02E-04
26GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.02E-04
27GO:0016788: hydrolase activity, acting on ester bonds7.47E-04
28GO:0016168: chlorophyll binding7.64E-04
29GO:0008794: arsenate reductase (glutaredoxin) activity7.88E-04
30GO:0070402: NADPH binding1.14E-03
31GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.14E-03
32GO:0050734: hydroxycinnamoyltransferase activity1.14E-03
33GO:0045548: phenylalanine ammonia-lyase activity1.14E-03
34GO:0052689: carboxylic ester hydrolase activity1.25E-03
35GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.42E-03
36GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.42E-03
37GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.42E-03
38GO:0001872: (1->3)-beta-D-glucan binding1.63E-03
39GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.63E-03
40GO:0016851: magnesium chelatase activity1.63E-03
41GO:0004392: heme oxygenase (decyclizing) activity2.19E-03
42GO:0015120: phosphoglycerate transmembrane transporter activity2.19E-03
43GO:0010011: auxin binding2.19E-03
44GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.19E-03
45GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.19E-03
46GO:0010328: auxin influx transmembrane transporter activity2.19E-03
47GO:0052793: pectin acetylesterase activity2.19E-03
48GO:0004506: squalene monooxygenase activity2.19E-03
49GO:0050378: UDP-glucuronate 4-epimerase activity2.19E-03
50GO:0043495: protein anchor2.19E-03
51GO:0022891: substrate-specific transmembrane transporter activity2.28E-03
52GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.74E-03
53GO:0009922: fatty acid elongase activity2.80E-03
54GO:0050662: coenzyme binding3.35E-03
55GO:0016688: L-ascorbate peroxidase activity3.46E-03
56GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.46E-03
57GO:1990714: hydroxyproline O-galactosyltransferase activity3.46E-03
58GO:0004130: cytochrome-c peroxidase activity3.46E-03
59GO:0016208: AMP binding3.46E-03
60GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.46E-03
61GO:0016491: oxidoreductase activity3.67E-03
62GO:0016762: xyloglucan:xyloglucosyl transferase activity3.85E-03
63GO:0051920: peroxiredoxin activity4.17E-03
64GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.17E-03
65GO:0051753: mannan synthase activity4.17E-03
66GO:0016746: transferase activity, transferring acyl groups4.37E-03
67GO:0019899: enzyme binding4.92E-03
68GO:0015250: water channel activity5.57E-03
69GO:0016209: antioxidant activity5.71E-03
70GO:0004033: aldo-keto reductase (NADP) activity5.71E-03
71GO:0016798: hydrolase activity, acting on glycosyl bonds6.56E-03
72GO:0030247: polysaccharide binding6.56E-03
73GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity7.27E-03
74GO:0003824: catalytic activity7.64E-03
75GO:0004568: chitinase activity9.30E-03
76GO:0003993: acid phosphatase activity9.65E-03
77GO:0004089: carbonate dehydratase activity1.24E-02
78GO:0031072: heat shock protein binding1.24E-02
79GO:0004565: beta-galactosidase activity1.24E-02
80GO:0008081: phosphoric diester hydrolase activity1.24E-02
81GO:0004022: alcohol dehydrogenase (NAD) activity1.24E-02
82GO:0051537: 2 iron, 2 sulfur cluster binding1.29E-02
83GO:0015293: symporter activity1.34E-02
84GO:0008131: primary amine oxidase activity1.35E-02
85GO:0008266: poly(U) RNA binding1.35E-02
86GO:0008168: methyltransferase activity1.41E-02
87GO:0051287: NAD binding1.45E-02
88GO:0008146: sulfotransferase activity1.46E-02
89GO:0031409: pigment binding1.58E-02
90GO:0003690: double-stranded DNA binding1.67E-02
91GO:0043424: protein histidine kinase binding1.83E-02
92GO:0030570: pectate lyase activity2.22E-02
93GO:0008810: cellulase activity2.22E-02
94GO:0003727: single-stranded RNA binding2.35E-02
95GO:0008514: organic anion transmembrane transporter activity2.35E-02
96GO:0015035: protein disulfide oxidoreductase activity2.37E-02
97GO:0003735: structural constituent of ribosome2.39E-02
98GO:0004871: signal transducer activity2.58E-02
99GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.78E-02
100GO:0004872: receptor activity3.07E-02
101GO:0048038: quinone binding3.23E-02
102GO:0009055: electron carrier activity3.44E-02
103GO:0016791: phosphatase activity3.70E-02
104GO:0015297: antiporter activity3.78E-02
105GO:0005200: structural constituent of cytoskeleton3.86E-02
106GO:0016722: oxidoreductase activity, oxidizing metal ions3.86E-02
107GO:0016413: O-acetyltransferase activity4.03E-02
108GO:0016597: amino acid binding4.03E-02
109GO:0008375: acetylglucosaminyltransferase activity4.53E-02
110GO:0102483: scopolin beta-glucosidase activity4.71E-02
111GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.88E-02
RankGO TermAdjusted P value
1GO:0010240: plastid pyruvate dehydrogenase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009515: granal stacked thylakoid0.00E+00
4GO:0009507: chloroplast5.66E-27
5GO:0009535: chloroplast thylakoid membrane1.56E-22
6GO:0009579: thylakoid1.21E-14
7GO:0009534: chloroplast thylakoid2.03E-13
8GO:0009543: chloroplast thylakoid lumen2.39E-13
9GO:0009941: chloroplast envelope1.81E-12
10GO:0009570: chloroplast stroma1.22E-08
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.86E-07
12GO:0031977: thylakoid lumen1.14E-06
13GO:0030095: chloroplast photosystem II2.32E-06
14GO:0048046: apoplast4.75E-06
15GO:0016021: integral component of membrane3.26E-05
16GO:0010319: stromule5.60E-05
17GO:0009654: photosystem II oxygen evolving complex1.47E-04
18GO:0043674: columella3.22E-04
19GO:0009523: photosystem II4.06E-04
20GO:0019898: extrinsic component of membrane4.06E-04
21GO:0030093: chloroplast photosystem I7.02E-04
22GO:0009528: plastid inner membrane1.14E-03
23GO:0010007: magnesium chelatase complex1.14E-03
24GO:0015630: microtubule cytoskeleton1.63E-03
25GO:0042651: thylakoid membrane1.74E-03
26GO:0009527: plastid outer membrane2.19E-03
27GO:0005840: ribosome2.23E-03
28GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.46E-03
29GO:0009706: chloroplast inner membrane4.21E-03
30GO:0031969: chloroplast membrane4.60E-03
31GO:0009986: cell surface4.92E-03
32GO:0009533: chloroplast stromal thylakoid4.92E-03
33GO:0042807: central vacuole4.92E-03
34GO:0010287: plastoglobule5.24E-03
35GO:0016020: membrane5.80E-03
36GO:0005886: plasma membrane6.07E-03
37GO:0005618: cell wall6.51E-03
38GO:0008180: COP9 signalosome7.42E-03
39GO:0032040: small-subunit processome1.13E-02
40GO:0046658: anchored component of plasma membrane1.21E-02
41GO:0031225: anchored component of membrane1.24E-02
42GO:0009508: plastid chromosome1.24E-02
43GO:0030076: light-harvesting complex1.46E-02
44GO:0009532: plastid stroma1.95E-02
45GO:0009522: photosystem I2.92E-02
46GO:0032580: Golgi cisterna membrane3.70E-02
47GO:0005778: peroxisomal membrane3.86E-02
48GO:0009295: nucleoid3.86E-02
Gene type



Gene DE type