Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G15570

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016553: base conversion or substitution editing0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0015805: S-adenosyl-L-methionine transport0.00E+00
4GO:0090470: shoot organ boundary specification0.00E+00
5GO:0042493: response to drug0.00E+00
6GO:0006399: tRNA metabolic process0.00E+00
7GO:0045176: apical protein localization0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I1.67E-08
9GO:0015979: photosynthesis7.25E-08
10GO:0010207: photosystem II assembly9.14E-05
11GO:0006833: water transport1.28E-04
12GO:0042549: photosystem II stabilization1.70E-04
13GO:0010196: nonphotochemical quenching2.99E-04
14GO:0070509: calcium ion import3.47E-04
15GO:0007263: nitric oxide mediated signal transduction3.47E-04
16GO:0043489: RNA stabilization3.47E-04
17GO:1904966: positive regulation of vitamin E biosynthetic process3.47E-04
18GO:1902025: nitrate import3.47E-04
19GO:0000481: maturation of 5S rRNA3.47E-04
20GO:1904964: positive regulation of phytol biosynthetic process3.47E-04
21GO:0033481: galacturonate biosynthetic process3.47E-04
22GO:0042371: vitamin K biosynthetic process3.47E-04
23GO:0006106: fumarate metabolic process3.47E-04
24GO:0090548: response to nitrate starvation3.47E-04
25GO:0034337: RNA folding3.47E-04
26GO:0071588: hydrogen peroxide mediated signaling pathway3.47E-04
27GO:0042335: cuticle development3.53E-04
28GO:0034220: ion transmembrane transport3.53E-04
29GO:0046620: regulation of organ growth3.76E-04
30GO:0009735: response to cytokinin4.47E-04
31GO:0032544: plastid translation4.61E-04
32GO:0009416: response to light stimulus5.48E-04
33GO:0010206: photosystem II repair5.52E-04
34GO:0016042: lipid catabolic process6.01E-04
35GO:0010205: photoinhibition6.53E-04
36GO:0009638: phototropism6.53E-04
37GO:0043255: regulation of carbohydrate biosynthetic process7.56E-04
38GO:0010115: regulation of abscisic acid biosynthetic process7.56E-04
39GO:1902326: positive regulation of chlorophyll biosynthetic process7.56E-04
40GO:0006898: receptor-mediated endocytosis7.56E-04
41GO:0034755: iron ion transmembrane transport7.56E-04
42GO:0001736: establishment of planar polarity7.56E-04
43GO:0010024: phytochromobilin biosynthetic process7.56E-04
44GO:0048829: root cap development7.61E-04
45GO:0010027: thylakoid membrane organization8.20E-04
46GO:0009658: chloroplast organization8.82E-04
47GO:0042254: ribosome biogenesis9.10E-04
48GO:0015995: chlorophyll biosynthetic process1.00E-03
49GO:0016024: CDP-diacylglycerol biosynthetic process1.00E-03
50GO:0006006: glucose metabolic process1.13E-03
51GO:0009725: response to hormone1.13E-03
52GO:0018298: protein-chromophore linkage1.14E-03
53GO:0090391: granum assembly1.22E-03
54GO:0006518: peptide metabolic process1.22E-03
55GO:0016045: detection of bacterium1.22E-03
56GO:0010359: regulation of anion channel activity1.22E-03
57GO:0006788: heme oxidation1.22E-03
58GO:0015840: urea transport1.22E-03
59GO:0015714: phosphoenolpyruvate transport1.22E-03
60GO:0010143: cutin biosynthetic process1.27E-03
61GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.36E-03
62GO:0009631: cold acclimation1.37E-03
63GO:0006636: unsaturated fatty acid biosynthetic process1.59E-03
64GO:0009650: UV protection1.76E-03
65GO:0080170: hydrogen peroxide transmembrane transport1.76E-03
66GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.76E-03
67GO:1901332: negative regulation of lateral root development1.76E-03
68GO:2001141: regulation of RNA biosynthetic process1.76E-03
69GO:0010371: regulation of gibberellin biosynthetic process1.76E-03
70GO:0071484: cellular response to light intensity1.76E-03
71GO:0009152: purine ribonucleotide biosynthetic process1.76E-03
72GO:0046653: tetrahydrofolate metabolic process1.76E-03
73GO:0009800: cinnamic acid biosynthetic process1.76E-03
74GO:0030001: metal ion transport1.81E-03
75GO:0006810: transport2.04E-03
76GO:0009926: auxin polar transport2.12E-03
77GO:0031408: oxylipin biosynthetic process2.13E-03
78GO:0003333: amino acid transmembrane transport2.13E-03
79GO:0045727: positive regulation of translation2.37E-03
80GO:0030104: water homeostasis2.37E-03
81GO:0015713: phosphoglycerate transport2.37E-03
82GO:0010109: regulation of photosynthesis2.37E-03
83GO:0006183: GTP biosynthetic process2.37E-03
84GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.54E-03
85GO:0071369: cellular response to ethylene stimulus2.54E-03
86GO:0006564: L-serine biosynthetic process3.03E-03
87GO:0006461: protein complex assembly3.03E-03
88GO:0000413: protein peptidyl-prolyl isomerization3.24E-03
89GO:0009826: unidimensional cell growth3.72E-03
90GO:0010190: cytochrome b6f complex assembly3.74E-03
91GO:0010337: regulation of salicylic acid metabolic process3.74E-03
92GO:0006596: polyamine biosynthetic process3.74E-03
93GO:0006559: L-phenylalanine catabolic process3.74E-03
94GO:0006561: proline biosynthetic process3.74E-03
95GO:0048759: xylem vessel member cell differentiation3.74E-03
96GO:0006751: glutathione catabolic process3.74E-03
97GO:0048827: phyllome development3.74E-03
98GO:0000470: maturation of LSU-rRNA3.74E-03
99GO:0009913: epidermal cell differentiation3.74E-03
100GO:0006655: phosphatidylglycerol biosynthetic process3.74E-03
101GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.50E-03
102GO:0006694: steroid biosynthetic process4.50E-03
103GO:0010019: chloroplast-nucleus signaling pathway4.50E-03
104GO:0009734: auxin-activated signaling pathway4.65E-03
105GO:0009409: response to cold4.99E-03
106GO:0009828: plant-type cell wall loosening5.22E-03
107GO:1900057: positive regulation of leaf senescence5.32E-03
108GO:0010444: guard mother cell differentiation5.32E-03
109GO:0006400: tRNA modification5.32E-03
110GO:0050829: defense response to Gram-negative bacterium5.32E-03
111GO:0009610: response to symbiotic fungus5.32E-03
112GO:0009395: phospholipid catabolic process5.32E-03
113GO:0009772: photosynthetic electron transport in photosystem II5.32E-03
114GO:1900056: negative regulation of leaf senescence5.32E-03
115GO:0030091: protein repair6.17E-03
116GO:0008610: lipid biosynthetic process6.17E-03
117GO:0006605: protein targeting6.17E-03
118GO:0032508: DNA duplex unwinding6.17E-03
119GO:0005975: carbohydrate metabolic process6.39E-03
120GO:0042128: nitrate assimilation6.96E-03
121GO:0009657: plastid organization7.08E-03
122GO:0009808: lignin metabolic process7.08E-03
123GO:0071482: cellular response to light stimulus7.08E-03
124GO:0006412: translation7.38E-03
125GO:0009414: response to water deprivation7.59E-03
126GO:0009051: pentose-phosphate shunt, oxidative branch8.04E-03
127GO:0006869: lipid transport8.28E-03
128GO:0010311: lateral root formation8.56E-03
129GO:0006865: amino acid transport9.88E-03
130GO:0009733: response to auxin9.96E-03
131GO:0006032: chitin catabolic process1.01E-02
132GO:0009688: abscisic acid biosynthetic process1.01E-02
133GO:0009637: response to blue light1.03E-02
134GO:0055085: transmembrane transport1.06E-02
135GO:0052544: defense response by callose deposition in cell wall1.12E-02
136GO:0008285: negative regulation of cell proliferation1.12E-02
137GO:0006879: cellular iron ion homeostasis1.12E-02
138GO:0006352: DNA-templated transcription, initiation1.12E-02
139GO:0009750: response to fructose1.12E-02
140GO:0048765: root hair cell differentiation1.12E-02
141GO:0000038: very long-chain fatty acid metabolic process1.12E-02
142GO:0008152: metabolic process1.15E-02
143GO:0010628: positive regulation of gene expression1.34E-02
144GO:0009785: blue light signaling pathway1.34E-02
145GO:0006108: malate metabolic process1.34E-02
146GO:0010114: response to red light1.34E-02
147GO:0010229: inflorescence development1.34E-02
148GO:0009718: anthocyanin-containing compound biosynthetic process1.34E-02
149GO:0019253: reductive pentose-phosphate cycle1.46E-02
150GO:0010540: basipetal auxin transport1.46E-02
151GO:0006855: drug transmembrane transport1.56E-02
152GO:0009825: multidimensional cell growth1.59E-02
153GO:0010167: response to nitrate1.59E-02
154GO:0071732: cellular response to nitric oxide1.59E-02
155GO:0010030: positive regulation of seed germination1.59E-02
156GO:0010053: root epidermal cell differentiation1.59E-02
157GO:0009225: nucleotide-sugar metabolic process1.59E-02
158GO:0009664: plant-type cell wall organization1.68E-02
159GO:0019762: glucosinolate catabolic process1.71E-02
160GO:0006364: rRNA processing1.81E-02
161GO:0000027: ribosomal large subunit assembly1.85E-02
162GO:0006487: protein N-linked glycosylation1.85E-02
163GO:0009695: jasmonic acid biosynthetic process1.98E-02
164GO:0009768: photosynthesis, light harvesting in photosystem I1.98E-02
165GO:0007017: microtubule-based process1.98E-02
166GO:0010073: meristem maintenance1.98E-02
167GO:0006825: copper ion transport1.98E-02
168GO:0016998: cell wall macromolecule catabolic process2.12E-02
169GO:0048511: rhythmic process2.12E-02
170GO:0009411: response to UV2.40E-02
171GO:0010227: floral organ abscission2.40E-02
172GO:0042127: regulation of cell proliferation2.55E-02
173GO:0009306: protein secretion2.55E-02
174GO:0009624: response to nematode2.57E-02
175GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.70E-02
176GO:0080022: primary root development2.85E-02
177GO:0042391: regulation of membrane potential2.85E-02
178GO:0010087: phloem or xylem histogenesis2.85E-02
179GO:0042631: cellular response to water deprivation2.85E-02
180GO:0010182: sugar mediated signaling pathway3.01E-02
181GO:0009958: positive gravitropism3.01E-02
182GO:0015986: ATP synthesis coupled proton transport3.17E-02
183GO:0042752: regulation of circadian rhythm3.17E-02
184GO:0007165: signal transduction3.22E-02
185GO:0048825: cotyledon development3.33E-02
186GO:0009651: response to salt stress3.36E-02
187GO:0032259: methylation3.44E-02
188GO:0000302: response to reactive oxygen species3.50E-02
189GO:0071554: cell wall organization or biogenesis3.50E-02
190GO:0016132: brassinosteroid biosynthetic process3.50E-02
191GO:0016032: viral process3.67E-02
192GO:0009630: gravitropism3.67E-02
193GO:0030163: protein catabolic process3.84E-02
194GO:0071281: cellular response to iron ion3.84E-02
195GO:0006633: fatty acid biosynthetic process4.04E-02
196GO:0040008: regulation of growth4.23E-02
197GO:0007623: circadian rhythm4.43E-02
198GO:0045490: pectin catabolic process4.43E-02
199GO:0009911: positive regulation of flower development4.55E-02
RankGO TermAdjusted P value
1GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
2GO:0010301: xanthoxin dehydrogenase activity0.00E+00
3GO:0010487: thermospermine synthase activity0.00E+00
4GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
5GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
6GO:0050614: delta24-sterol reductase activity0.00E+00
7GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
8GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
9GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
10GO:0019843: rRNA binding6.77E-09
11GO:0005528: FK506 binding1.45E-07
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.64E-07
13GO:0016788: hydrolase activity, acting on ester bonds2.62E-05
14GO:0052689: carboxylic ester hydrolase activity6.22E-05
15GO:0010328: auxin influx transmembrane transporter activity7.53E-05
16GO:0015250: water channel activity8.60E-05
17GO:0015121: phosphoenolpyruvate:phosphate antiporter activity3.47E-04
18GO:0004321: fatty-acyl-CoA synthase activity3.47E-04
19GO:0015200: methylammonium transmembrane transporter activity3.47E-04
20GO:0016768: spermine synthase activity3.47E-04
21GO:0045485: omega-6 fatty acid desaturase activity3.47E-04
22GO:0005221: intracellular cyclic nucleotide activated cation channel activity3.47E-04
23GO:0004333: fumarate hydratase activity3.47E-04
24GO:0030794: (S)-coclaurine-N-methyltransferase activity3.47E-04
25GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.56E-04
26GO:0003839: gamma-glutamylcyclotransferase activity7.56E-04
27GO:0004617: phosphoglycerate dehydrogenase activity7.56E-04
28GO:0003938: IMP dehydrogenase activity7.56E-04
29GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.56E-04
30GO:0016168: chlorophyll binding8.78E-04
31GO:0004565: beta-galactosidase activity1.13E-03
32GO:0090729: toxin activity1.22E-03
33GO:0050734: hydroxycinnamoyltransferase activity1.22E-03
34GO:0045548: phenylalanine ammonia-lyase activity1.22E-03
35GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.22E-03
36GO:0008864: formyltetrahydrofolate deformylase activity1.22E-03
37GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.22E-03
38GO:0008266: poly(U) RNA binding1.27E-03
39GO:0003735: structural constituent of ribosome1.50E-03
40GO:0003993: acid phosphatase activity1.62E-03
41GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.76E-03
42GO:0016851: magnesium chelatase activity1.76E-03
43GO:0001872: (1->3)-beta-D-glucan binding1.76E-03
44GO:0004871: signal transducer activity1.91E-03
45GO:0016987: sigma factor activity2.37E-03
46GO:0052793: pectin acetylesterase activity2.37E-03
47GO:0050378: UDP-glucuronate 4-epimerase activity2.37E-03
48GO:0043495: protein anchor2.37E-03
49GO:0042277: peptide binding2.37E-03
50GO:0004392: heme oxygenase (decyclizing) activity2.37E-03
51GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.37E-03
52GO:0015204: urea transmembrane transporter activity2.37E-03
53GO:0015120: phosphoglycerate transmembrane transporter activity2.37E-03
54GO:0001053: plastid sigma factor activity2.37E-03
55GO:0010011: auxin binding2.37E-03
56GO:0004345: glucose-6-phosphate dehydrogenase activity2.37E-03
57GO:0015293: symporter activity2.46E-03
58GO:0030570: pectate lyase activity2.54E-03
59GO:0022891: substrate-specific transmembrane transporter activity2.54E-03
60GO:0005215: transporter activity3.22E-03
61GO:0004629: phospholipase C activity3.74E-03
62GO:0004130: cytochrome-c peroxidase activity3.74E-03
63GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.74E-03
64GO:0016688: L-ascorbate peroxidase activity3.74E-03
65GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.74E-03
66GO:0008519: ammonium transmembrane transporter activity3.74E-03
67GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.50E-03
68GO:0004435: phosphatidylinositol phospholipase C activity4.50E-03
69GO:0005261: cation channel activity4.50E-03
70GO:0005242: inward rectifier potassium channel activity4.50E-03
71GO:0016746: transferase activity, transferring acyl groups5.05E-03
72GO:0016791: phosphatase activity5.22E-03
73GO:0019899: enzyme binding5.32E-03
74GO:0043022: ribosome binding6.17E-03
75GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.08E-03
76GO:0016829: lyase activity7.17E-03
77GO:0030247: polysaccharide binding7.35E-03
78GO:0016207: 4-coumarate-CoA ligase activity8.04E-03
79GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.93E-03
80GO:0005381: iron ion transmembrane transporter activity9.03E-03
81GO:0004568: chitinase activity1.01E-02
82GO:0050661: NADP binding1.18E-02
83GO:0008081: phosphoric diester hydrolase activity1.34E-02
84GO:0004022: alcohol dehydrogenase (NAD) activity1.34E-02
85GO:0005262: calcium channel activity1.34E-02
86GO:0016491: oxidoreductase activity1.36E-02
87GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.46E-02
88GO:0030552: cAMP binding1.59E-02
89GO:0030553: cGMP binding1.59E-02
90GO:0051287: NAD binding1.62E-02
91GO:0008289: lipid binding1.63E-02
92GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.71E-02
93GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.71E-02
94GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.71E-02
95GO:0031409: pigment binding1.71E-02
96GO:0005216: ion channel activity1.98E-02
97GO:0015171: amino acid transmembrane transporter activity2.00E-02
98GO:0030551: cyclic nucleotide binding2.85E-02
99GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.01E-02
100GO:0004722: protein serine/threonine phosphatase activity3.14E-02
101GO:0050662: coenzyme binding3.17E-02
102GO:0004872: receptor activity3.33E-02
103GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.52E-02
104GO:0004518: nuclease activity3.67E-02
105GO:0000156: phosphorelay response regulator activity3.84E-02
106GO:0005200: structural constituent of cytoskeleton4.19E-02
107GO:0015297: antiporter activity4.23E-02
108GO:0016597: amino acid binding4.36E-02
109GO:0016413: O-acetyltransferase activity4.36E-02
110GO:0008375: acetylglucosaminyltransferase activity4.91E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0009507: chloroplast3.92E-22
3GO:0009941: chloroplast envelope1.61E-17
4GO:0009535: chloroplast thylakoid membrane2.14E-17
5GO:0009579: thylakoid1.26E-16
6GO:0009543: chloroplast thylakoid lumen4.78E-16
7GO:0009534: chloroplast thylakoid5.03E-13
8GO:0031977: thylakoid lumen2.09E-12
9GO:0009570: chloroplast stroma3.76E-12
10GO:0005840: ribosome6.66E-05
11GO:0005886: plasma membrane7.70E-05
12GO:0009654: photosystem II oxygen evolving complex1.73E-04
13GO:0016020: membrane2.19E-04
14GO:0042807: central vacuole2.99E-04
15GO:0009533: chloroplast stromal thylakoid2.99E-04
16GO:0043674: columella3.47E-04
17GO:0009515: granal stacked thylakoid3.47E-04
18GO:0045239: tricarboxylic acid cycle enzyme complex3.47E-04
19GO:0009523: photosystem II4.70E-04
20GO:0019898: extrinsic component of membrane4.70E-04
21GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.52E-04
22GO:0008180: COP9 signalosome5.52E-04
23GO:0030093: chloroplast photosystem I7.56E-04
24GO:0010007: magnesium chelatase complex1.22E-03
25GO:0030095: chloroplast photosystem II1.27E-03
26GO:0031969: chloroplast membrane1.28E-03
27GO:0031225: anchored component of membrane1.45E-03
28GO:0015630: microtubule cytoskeleton1.76E-03
29GO:0042651: thylakoid membrane1.94E-03
30GO:0048046: apoplast2.79E-03
31GO:0046658: anchored component of plasma membrane3.11E-03
32GO:0005618: cell wall3.53E-03
33GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.74E-03
34GO:0005887: integral component of plasma membrane4.36E-03
35GO:0009986: cell surface5.32E-03
36GO:0010287: plastoglobule6.05E-03
37GO:0000326: protein storage vacuole7.08E-03
38GO:0019005: SCF ubiquitin ligase complex8.14E-03
39GO:0005576: extracellular region9.43E-03
40GO:0055028: cortical microtubule1.01E-02
41GO:0032040: small-subunit processome1.23E-02
42GO:0009505: plant-type cell wall1.23E-02
43GO:0009508: plastid chromosome1.34E-02
44GO:0000312: plastid small ribosomal subunit1.46E-02
45GO:0030076: light-harvesting complex1.59E-02
46GO:0000502: proteasome complex1.81E-02
47GO:0016021: integral component of membrane1.94E-02
48GO:0005770: late endosome3.01E-02
49GO:0009522: photosystem I3.17E-02
50GO:0032580: Golgi cisterna membrane4.01E-02
51GO:0009295: nucleoid4.19E-02
52GO:0010319: stromule4.19E-02
53GO:0009705: plant-type vacuole membrane4.43E-02
54GO:0030529: intracellular ribonucleoprotein complex4.55E-02
Gene type



Gene DE type