co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G13810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043201: response to leucine	0.00E+00
2	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
3	GO:0080052: response to histidine	0.00E+00
4	GO:0046865: terpenoid transport	0.00E+00
5	GO:0080053: response to phenylalanine	0.00E+00
6	GO:0006983: ER overload response	0.00E+00
7	GO:0051238: sequestering of metal ion	0.00E+00
8	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
9	GO:0042908: xenobiotic transport	0.00E+00
10	GO:0006592: ornithine biosynthetic process	0.00E+00
11	GO:0010055: atrichoblast differentiation	0.00E+00
12	GO:0048194: Golgi vesicle budding	1.24E-05
13	GO:0071456: cellular response to hypoxia	5.23E-05
14	GO:0030091: protein repair	1.32E-04
15	GO:0010204: defense response signaling pathway, resistance gene-independent	1.65E-04
16	GO:0060627: regulation of vesicle-mediated transport	1.73E-04
17	GO:1990641: response to iron ion starvation	1.73E-04
18	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.73E-04
19	GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport	1.73E-04
20	GO:0042759: long-chain fatty acid biosynthetic process	1.73E-04
21	GO:0032107: regulation of response to nutrient levels	1.73E-04
22	GO:1903648: positive regulation of chlorophyll catabolic process	1.73E-04
23	GO:0043069: negative regulation of programmed cell death	2.85E-04
24	GO:0006212: uracil catabolic process	3.92E-04
25	GO:0006101: citrate metabolic process	3.92E-04
26	GO:0043066: negative regulation of apoptotic process	3.92E-04
27	GO:0019483: beta-alanine biosynthetic process	3.92E-04
28	GO:0042939: tripeptide transport	3.92E-04
29	GO:0042325: regulation of phosphorylation	3.92E-04
30	GO:0019441: tryptophan catabolic process to kynurenine	3.92E-04
31	GO:0031648: protein destabilization	3.92E-04
32	GO:0070588: calcium ion transmembrane transport	5.46E-04
33	GO:0015692: lead ion transport	6.40E-04
34	GO:0048281: inflorescence morphogenesis	6.40E-04
35	GO:0080168: abscisic acid transport	6.40E-04
36	GO:0010359: regulation of anion channel activity	6.40E-04
37	GO:0061158: 3'-UTR-mediated mRNA destabilization	6.40E-04
38	GO:0006855: drug transmembrane transport	7.35E-04
39	GO:0015700: arsenite transport	9.13E-04
40	GO:0001676: long-chain fatty acid metabolic process	9.13E-04
41	GO:0046513: ceramide biosynthetic process	9.13E-04
42	GO:0080142: regulation of salicylic acid biosynthetic process	1.21E-03
43	GO:0042938: dipeptide transport	1.21E-03
44	GO:0000304: response to singlet oxygen	1.54E-03
45	GO:0009697: salicylic acid biosynthetic process	1.54E-03
46	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.54E-03
47	GO:0006097: glyoxylate cycle	1.54E-03
48	GO:0010193: response to ozone	1.60E-03
49	GO:1902456: regulation of stomatal opening	1.89E-03
50	GO:1900425: negative regulation of defense response to bacterium	1.89E-03
51	GO:0002238: response to molecule of fungal origin	1.89E-03
52	GO:0050665: hydrogen peroxide biosynthetic process	1.89E-03
53	GO:0015691: cadmium ion transport	1.89E-03
54	GO:0009751: response to salicylic acid	2.08E-03
55	GO:0009854: oxidative photosynthetic carbon pathway	2.27E-03
56	GO:0050829: defense response to Gram-negative bacterium	2.67E-03
57	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	2.67E-03
58	GO:1900057: positive regulation of leaf senescence	2.67E-03
59	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	2.67E-03
60	GO:0050790: regulation of catalytic activity	2.67E-03
61	GO:0009395: phospholipid catabolic process	2.67E-03
62	GO:0009819: drought recovery	3.09E-03
63	GO:1900150: regulation of defense response to fungus	3.09E-03
64	GO:0019375: galactolipid biosynthetic process	3.09E-03
65	GO:0006102: isocitrate metabolic process	3.09E-03
66	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	3.54E-03
67	GO:0006526: arginine biosynthetic process	3.54E-03
68	GO:0043562: cellular response to nitrogen levels	3.54E-03
69	GO:0009808: lignin metabolic process	3.54E-03
70	GO:0007338: single fertilization	4.00E-03
71	GO:0046685: response to arsenic-containing substance	4.00E-03
72	GO:0009821: alkaloid biosynthetic process	4.00E-03
73	GO:0010112: regulation of systemic acquired resistance	4.00E-03
74	GO:0042742: defense response to bacterium	4.06E-03
75	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.49E-03
76	GO:0008202: steroid metabolic process	4.49E-03
77	GO:0051707: response to other organism	4.86E-03
78	GO:0006995: cellular response to nitrogen starvation	4.99E-03
79	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.99E-03
80	GO:0000038: very long-chain fatty acid metabolic process	5.52E-03
81	GO:0009089: lysine biosynthetic process via diaminopimelate	5.52E-03
82	GO:0006879: cellular iron ion homeostasis	5.52E-03
83	GO:0006790: sulfur compound metabolic process	6.06E-03
84	GO:0002213: defense response to insect	6.06E-03
85	GO:0000266: mitochondrial fission	6.06E-03
86	GO:0009846: pollen germination	6.10E-03
87	GO:0010200: response to chitin	6.48E-03
88	GO:0006807: nitrogen compound metabolic process	6.61E-03
89	GO:0055046: microgametogenesis	6.61E-03
90	GO:0046777: protein autophosphorylation	6.76E-03
91	GO:0002237: response to molecule of bacterial origin	7.20E-03
92	GO:0046854: phosphatidylinositol phosphorylation	7.79E-03
93	GO:0009620: response to fungus	8.51E-03
94	GO:0032259: methylation	9.64E-03
95	GO:0006874: cellular calcium ion homeostasis	9.69E-03
96	GO:0006508: proteolysis	9.75E-03
97	GO:0016998: cell wall macromolecule catabolic process	1.03E-02
98	GO:0016226: iron-sulfur cluster assembly	1.10E-02
99	GO:0031348: negative regulation of defense response	1.10E-02
100	GO:0009753: response to jasmonic acid	1.11E-02
101	GO:0006952: defense response	1.15E-02
102	GO:0071369: cellular response to ethylene stimulus	1.17E-02
103	GO:0010584: pollen exine formation	1.24E-02
104	GO:0009561: megagametogenesis	1.24E-02
105	GO:0042391: regulation of membrane potential	1.39E-02
106	GO:0007165: signal transduction	1.46E-02
107	GO:0071472: cellular response to salt stress	1.47E-02
108	GO:0008360: regulation of cell shape	1.47E-02
109	GO:0006979: response to oxidative stress	1.50E-02
110	GO:0010150: leaf senescence	1.62E-02
111	GO:0002229: defense response to oomycetes	1.70E-02
112	GO:0000302: response to reactive oxygen species	1.70E-02
113	GO:0006635: fatty acid beta-oxidation	1.70E-02
114	GO:0007166: cell surface receptor signaling pathway	1.85E-02
115	GO:0030163: protein catabolic process	1.87E-02
116	GO:0009617: response to bacterium	1.93E-02
117	GO:0010252: auxin homeostasis	1.95E-02
118	GO:0009567: double fertilization forming a zygote and endosperm	1.95E-02
119	GO:0051607: defense response to virus	2.12E-02
120	GO:0009615: response to virus	2.21E-02
121	GO:0009816: defense response to bacterium, incompatible interaction	2.30E-02
122	GO:0009607: response to biotic stimulus	2.30E-02
123	GO:0009627: systemic acquired resistance	2.39E-02
124	GO:0006950: response to stress	2.48E-02
125	GO:0045893: positive regulation of transcription, DNA-templated	2.51E-02
126	GO:0016311: dephosphorylation	2.58E-02
127	GO:0009817: defense response to fungus, incompatible interaction	2.67E-02
128	GO:0008219: cell death	2.67E-02
129	GO:0016567: protein ubiquitination	2.76E-02
130	GO:0007049: cell cycle	2.80E-02
131	GO:0046686: response to cadmium ion	2.86E-02
132	GO:0006499: N-terminal protein myristoylation	2.87E-02
133	GO:0009723: response to ethylene	2.90E-02
134	GO:0048527: lateral root development	2.96E-02
135	GO:0010119: regulation of stomatal movement	2.96E-02
136	GO:0007568: aging	2.96E-02
137	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.22E-02
138	GO:0016192: vesicle-mediated transport	3.27E-02
139	GO:0006099: tricarboxylic acid cycle	3.27E-02
140	GO:0042542: response to hydrogen peroxide	3.68E-02
141	GO:0010114: response to red light	3.79E-02
142	GO:0006869: lipid transport	4.07E-02
143	GO:0031347: regulation of defense response	4.34E-02
144	GO:0042538: hyperosmotic salinity response	4.45E-02
145	GO:0009809: lignin biosynthetic process	4.68E-02
146	GO:0048364: root development	4.76E-02
147	GO:0051603: proteolysis involved in cellular protein catabolic process	4.80E-02
148	GO:0010224: response to UV-B	4.80E-02
149	GO:0006857: oligopeptide transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:1990837: sequence-specific double-stranded DNA binding	0.00E+00
2	GO:0003837: beta-ureidopropionase activity	0.00E+00
3	GO:0070577: lysine-acetylated histone binding	0.00E+00
4	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
5	GO:0008777: acetylornithine deacetylase activity	0.00E+00
6	GO:0016504: peptidase activator activity	0.00E+00
7	GO:0005516: calmodulin binding	2.09E-07
8	GO:0004012: phospholipid-translocating ATPase activity	8.03E-07
9	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.56E-05
10	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	7.74E-05
11	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	1.73E-04
12	GO:0071992: phytochelatin transmembrane transporter activity	1.73E-04
13	GO:0010285: L,L-diaminopimelate aminotransferase activity	1.73E-04
14	GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity	1.73E-04
15	GO:0008559: xenobiotic-transporting ATPase activity	3.31E-04
16	GO:0032934: sterol binding	3.92E-04
17	GO:0004061: arylformamidase activity	3.92E-04
18	GO:0042937: tripeptide transporter activity	3.92E-04
19	GO:0036455: iron-sulfur transferase activity	3.92E-04
20	GO:0050291: sphingosine N-acyltransferase activity	3.92E-04
21	GO:0003994: aconitate hydratase activity	3.92E-04
22	GO:0005388: calcium-transporting ATPase activity	4.32E-04
23	GO:0004190: aspartic-type endopeptidase activity	5.46E-04
24	GO:0000975: regulatory region DNA binding	6.40E-04
25	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.40E-04
26	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	9.13E-04
27	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	9.13E-04
28	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	9.13E-04
29	GO:0070628: proteasome binding	1.21E-03
30	GO:0003995: acyl-CoA dehydrogenase activity	1.21E-03
31	GO:0010279: indole-3-acetic acid amido synthetase activity	1.21E-03
32	GO:0008891: glycolate oxidase activity	1.21E-03
33	GO:0042936: dipeptide transporter activity	1.21E-03
34	GO:0008198: ferrous iron binding	1.54E-03
35	GO:0003997: acyl-CoA oxidase activity	1.54E-03
36	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.27E-03
37	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.27E-03
38	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.27E-03
39	GO:0051920: peroxiredoxin activity	2.27E-03
40	GO:0004143: diacylglycerol kinase activity	2.67E-03
41	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.84E-03
42	GO:0016209: antioxidant activity	3.09E-03
43	GO:0004674: protein serine/threonine kinase activity	3.19E-03
44	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	3.54E-03
45	GO:0008142: oxysterol binding	3.54E-03
46	GO:0003843: 1,3-beta-D-glucan synthase activity	3.54E-03
47	GO:0004630: phospholipase D activity	3.54E-03
48	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.68E-03
49	GO:0051539: 4 iron, 4 sulfur cluster binding	4.30E-03
50	GO:0016844: strictosidine synthase activity	4.49E-03
51	GO:0000287: magnesium ion binding	4.61E-03
52	GO:0008171: O-methyltransferase activity	4.99E-03
53	GO:0005524: ATP binding	5.27E-03
54	GO:0003680: AT DNA binding	5.52E-03
55	GO:0050660: flavin adenine dinucleotide binding	5.68E-03
56	GO:0004022: alcohol dehydrogenase (NAD) activity	6.61E-03
57	GO:0019888: protein phosphatase regulator activity	6.61E-03
58	GO:0004842: ubiquitin-protein transferase activity	7.15E-03
59	GO:0004175: endopeptidase activity	7.20E-03
60	GO:0008234: cysteine-type peptidase activity	7.25E-03
61	GO:0030553: cGMP binding	7.79E-03
62	GO:0005217: intracellular ligand-gated ion channel activity	7.79E-03
63	GO:0004970: ionotropic glutamate receptor activity	7.79E-03
64	GO:0030552: cAMP binding	7.79E-03
65	GO:0001046: core promoter sequence-specific DNA binding	9.03E-03
66	GO:0003954: NADH dehydrogenase activity	9.03E-03
67	GO:0005216: ion channel activity	9.69E-03
68	GO:0016301: kinase activity	1.07E-02
69	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.24E-02
70	GO:0003727: single-stranded RNA binding	1.24E-02
71	GO:0004252: serine-type endopeptidase activity	1.30E-02
72	GO:0005509: calcium ion binding	1.31E-02
73	GO:0030551: cyclic nucleotide binding	1.39E-02
74	GO:0005249: voltage-gated potassium channel activity	1.39E-02
75	GO:0010181: FMN binding	1.54E-02
76	GO:0004197: cysteine-type endopeptidase activity	1.78E-02
77	GO:0008483: transaminase activity	2.04E-02
78	GO:0008237: metallopeptidase activity	2.04E-02
79	GO:0051213: dioxygenase activity	2.21E-02
80	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.39E-02
81	GO:0008168: methyltransferase activity	2.41E-02
82	GO:0030247: polysaccharide binding	2.48E-02
83	GO:0004683: calmodulin-dependent protein kinase activity	2.48E-02
84	GO:0004601: peroxidase activity	2.51E-02
85	GO:0043565: sequence-specific DNA binding	2.58E-02
86	GO:0015238: drug transmembrane transporter activity	2.77E-02
87	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.96E-02
88	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.16E-02
89	GO:0050661: NADP binding	3.47E-02
90	GO:0046872: metal ion binding	3.91E-02
91	GO:0035091: phosphatidylinositol binding	4.01E-02
92	GO:0051537: 2 iron, 2 sulfur cluster binding	4.01E-02
93	GO:0005198: structural molecule activity	4.12E-02
94	GO:0009055: electron carrier activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0098687: chromosomal region	0.00E+00
2	GO:0005886: plasma membrane	1.07E-04
3	GO:0031304: intrinsic component of mitochondrial inner membrane	3.92E-04
4	GO:0000325: plant-type vacuole	3.45E-03
5	GO:0000148: 1,3-beta-D-glucan synthase complex	3.54E-03
6	GO:0005635: nuclear envelope	7.01E-03
7	GO:0005764: lysosome	7.20E-03
8	GO:0005839: proteasome core complex	1.03E-02
9	GO:0005773: vacuole	1.05E-02
10	GO:0005829: cytosol	1.11E-02
11	GO:0009524: phragmoplast	1.23E-02
12	GO:0005770: late endosome	1.47E-02
13	GO:0005887: integral component of plasma membrane	1.50E-02
14	GO:0009504: cell plate	1.62E-02
15	GO:0071944: cell periphery	1.87E-02
16	GO:0005777: peroxisome	2.51E-02
17	GO:0000151: ubiquitin ligase complex	2.67E-02
18	GO:0005789: endoplasmic reticulum membrane	2.78E-02
19	GO:0005819: spindle	3.37E-02
20	GO:0031225: anchored component of membrane	3.67E-02
21	GO:0005618: cell wall	4.27E-02
22	GO:0031966: mitochondrial membrane	4.45E-02
23	GO:0005783: endoplasmic reticulum	4.55E-02