GO Enrichment Analysis of Co-expressed Genes with
AT3G13740
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 3 | GO:0007172: signal complex assembly | 0.00E+00 |
| 4 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 5 | GO:0033206: meiotic cytokinesis | 3.00E-05 |
| 6 | GO:0043007: maintenance of rDNA | 3.00E-05 |
| 7 | GO:0010207: photosystem II assembly | 4.04E-05 |
| 8 | GO:0035304: regulation of protein dephosphorylation | 7.58E-05 |
| 9 | GO:0018026: peptidyl-lysine monomethylation | 7.58E-05 |
| 10 | GO:0090391: granum assembly | 1.32E-04 |
| 11 | GO:0010218: response to far red light | 3.49E-04 |
| 12 | GO:0015979: photosynthesis | 3.91E-04 |
| 13 | GO:0042549: photosystem II stabilization | 4.20E-04 |
| 14 | GO:0042176: regulation of protein catabolic process | 4.20E-04 |
| 15 | GO:2000033: regulation of seed dormancy process | 5.02E-04 |
| 16 | GO:0009942: longitudinal axis specification | 5.02E-04 |
| 17 | GO:0010114: response to red light | 5.12E-04 |
| 18 | GO:0050829: defense response to Gram-negative bacterium | 5.88E-04 |
| 19 | GO:0009642: response to light intensity | 6.76E-04 |
| 20 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 6.76E-04 |
| 21 | GO:0007389: pattern specification process | 7.68E-04 |
| 22 | GO:0009657: plastid organization | 7.68E-04 |
| 23 | GO:0010206: photosystem II repair | 8.63E-04 |
| 24 | GO:0010205: photoinhibition | 9.61E-04 |
| 25 | GO:0019684: photosynthesis, light reaction | 1.16E-03 |
| 26 | GO:0043085: positive regulation of catalytic activity | 1.16E-03 |
| 27 | GO:1903507: negative regulation of nucleic acid-templated transcription | 1.16E-03 |
| 28 | GO:0006094: gluconeogenesis | 1.38E-03 |
| 29 | GO:0009934: regulation of meristem structural organization | 1.50E-03 |
| 30 | GO:0006289: nucleotide-excision repair | 1.86E-03 |
| 31 | GO:2000377: regulation of reactive oxygen species metabolic process | 1.86E-03 |
| 32 | GO:0009863: salicylic acid mediated signaling pathway | 1.86E-03 |
| 33 | GO:0010187: negative regulation of seed germination | 1.86E-03 |
| 34 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.98E-03 |
| 35 | GO:0007017: microtubule-based process | 1.98E-03 |
| 36 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 2.25E-03 |
| 37 | GO:0006662: glycerol ether metabolic process | 2.94E-03 |
| 38 | GO:0010583: response to cyclopentenone | 3.55E-03 |
| 39 | GO:0010252: auxin homeostasis | 3.87E-03 |
| 40 | GO:0010029: regulation of seed germination | 4.53E-03 |
| 41 | GO:0018298: protein-chromophore linkage | 5.23E-03 |
| 42 | GO:0007568: aging | 5.78E-03 |
| 43 | GO:0009637: response to blue light | 6.16E-03 |
| 44 | GO:0009867: jasmonic acid mediated signaling pathway | 6.16E-03 |
| 45 | GO:0007275: multicellular organism development | 6.25E-03 |
| 46 | GO:0009734: auxin-activated signaling pathway | 6.28E-03 |
| 47 | GO:0034599: cellular response to oxidative stress | 6.35E-03 |
| 48 | GO:0009926: auxin polar transport | 7.34E-03 |
| 49 | GO:0009640: photomorphogenesis | 7.34E-03 |
| 50 | GO:0031347: regulation of defense response | 8.38E-03 |
| 51 | GO:0009664: plant-type cell wall organization | 8.60E-03 |
| 52 | GO:0042538: hyperosmotic salinity response | 8.60E-03 |
| 53 | GO:0006364: rRNA processing | 9.03E-03 |
| 54 | GO:0006417: regulation of translation | 9.70E-03 |
| 55 | GO:0006096: glycolytic process | 1.02E-02 |
| 56 | GO:0009740: gibberellic acid mediated signaling pathway | 1.11E-02 |
| 57 | GO:0042545: cell wall modification | 1.13E-02 |
| 58 | GO:0006396: RNA processing | 1.18E-02 |
| 59 | GO:0040008: regulation of growth | 1.65E-02 |
| 60 | GO:0045490: pectin catabolic process | 1.70E-02 |
| 61 | GO:0009733: response to auxin | 1.81E-02 |
| 62 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 1.85E-02 |
| 63 | GO:0042254: ribosome biogenesis | 2.36E-02 |
| 64 | GO:0009723: response to ethylene | 2.58E-02 |
| 65 | GO:0080167: response to karrikin | 2.71E-02 |
| 66 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.78E-02 |
| 67 | GO:0046777: protein autophosphorylation | 2.84E-02 |
| 68 | GO:0045454: cell redox homeostasis | 3.08E-02 |
| 69 | GO:0045892: negative regulation of transcription, DNA-templated | 3.11E-02 |
| 70 | GO:0006281: DNA repair | 3.58E-02 |
| 71 | GO:0006629: lipid metabolic process | 3.58E-02 |
| 72 | GO:0006397: mRNA processing | 3.69E-02 |
| 73 | GO:0048364: root development | 3.69E-02 |
| 74 | GO:0008152: metabolic process | 3.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 3.00E-05 |
| 2 | GO:0010242: oxygen evolving activity | 3.00E-05 |
| 3 | GO:0016868: intramolecular transferase activity, phosphotransferases | 7.58E-05 |
| 4 | GO:0019172: glyoxalase III activity | 7.58E-05 |
| 5 | GO:0016279: protein-lysine N-methyltransferase activity | 2.67E-04 |
| 6 | GO:0070628: proteasome binding | 2.67E-04 |
| 7 | GO:0016846: carbon-sulfur lyase activity | 3.42E-04 |
| 8 | GO:0004332: fructose-bisphosphate aldolase activity | 4.20E-04 |
| 9 | GO:0031593: polyubiquitin binding | 4.20E-04 |
| 10 | GO:0004462: lactoylglutathione lyase activity | 4.20E-04 |
| 11 | GO:0043621: protein self-association | 5.52E-04 |
| 12 | GO:0000989: transcription factor activity, transcription factor binding | 8.63E-04 |
| 13 | GO:0009672: auxin:proton symporter activity | 9.61E-04 |
| 14 | GO:0008047: enzyme activator activity | 1.06E-03 |
| 15 | GO:0031072: heat shock protein binding | 1.38E-03 |
| 16 | GO:0010329: auxin efflux transmembrane transporter activity | 1.38E-03 |
| 17 | GO:0008081: phosphoric diester hydrolase activity | 1.38E-03 |
| 18 | GO:0008266: poly(U) RNA binding | 1.50E-03 |
| 19 | GO:0031409: pigment binding | 1.73E-03 |
| 20 | GO:0043130: ubiquitin binding | 1.86E-03 |
| 21 | GO:0003714: transcription corepressor activity | 1.86E-03 |
| 22 | GO:0033612: receptor serine/threonine kinase binding | 2.11E-03 |
| 23 | GO:0003727: single-stranded RNA binding | 2.52E-03 |
| 24 | GO:0003756: protein disulfide isomerase activity | 2.52E-03 |
| 25 | GO:0047134: protein-disulfide reductase activity | 2.66E-03 |
| 26 | GO:0004791: thioredoxin-disulfide reductase activity | 3.09E-03 |
| 27 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.71E-03 |
| 28 | GO:0003684: damaged DNA binding | 3.87E-03 |
| 29 | GO:0005200: structural constituent of cytoskeleton | 4.03E-03 |
| 30 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 4.03E-03 |
| 31 | GO:0016168: chlorophyll binding | 4.53E-03 |
| 32 | GO:0005096: GTPase activator activity | 5.41E-03 |
| 33 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 6.54E-03 |
| 34 | GO:0045330: aspartyl esterase activity | 9.70E-03 |
| 35 | GO:0030599: pectinesterase activity | 1.11E-02 |
| 36 | GO:0051082: unfolded protein binding | 1.16E-02 |
| 37 | GO:0015035: protein disulfide oxidoreductase activity | 1.18E-02 |
| 38 | GO:0046910: pectinesterase inhibitor activity | 1.62E-02 |
| 39 | GO:0005515: protein binding | 1.64E-02 |
| 40 | GO:0046982: protein heterodimerization activity | 2.29E-02 |
| 41 | GO:0004871: signal transducer activity | 3.18E-02 |
| 42 | GO:0003924: GTPase activity | 3.58E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0009534: chloroplast thylakoid | 8.06E-10 |
| 3 | GO:0009570: chloroplast stroma | 5.87E-08 |
| 4 | GO:0009507: chloroplast | 1.49E-07 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 3.16E-05 |
| 6 | GO:0010287: plastoglobule | 7.83E-05 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 8.48E-05 |
| 8 | GO:0009522: photosystem I | 1.41E-04 |
| 9 | GO:0009579: thylakoid | 1.80E-04 |
| 10 | GO:0009531: secondary cell wall | 1.97E-04 |
| 11 | GO:0055035: plastid thylakoid membrane | 3.42E-04 |
| 12 | GO:0031977: thylakoid lumen | 4.74E-04 |
| 13 | GO:0009538: photosystem I reaction center | 6.76E-04 |
| 14 | GO:0045298: tubulin complex | 8.63E-04 |
| 15 | GO:0009941: chloroplast envelope | 9.67E-04 |
| 16 | GO:0016602: CCAAT-binding factor complex | 1.38E-03 |
| 17 | GO:0030095: chloroplast photosystem II | 1.50E-03 |
| 18 | GO:0030076: light-harvesting complex | 1.61E-03 |
| 19 | GO:0009654: photosystem II oxygen evolving complex | 1.98E-03 |
| 20 | GO:0009523: photosystem II | 3.24E-03 |
| 21 | GO:0019898: extrinsic component of membrane | 3.24E-03 |
| 22 | GO:0071944: cell periphery | 3.71E-03 |
| 23 | GO:0000325: plant-type vacuole | 5.78E-03 |
| 24 | GO:0005623: cell | 1.38E-02 |
| 25 | GO:0005874: microtubule | 2.64E-02 |
| 26 | GO:0031969: chloroplast membrane | 2.71E-02 |