co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G13690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0046677: response to antibiotic	0.00E+00
4	GO:0007172: signal complex assembly	0.00E+00
5	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
6	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
7	GO:0070584: mitochondrion morphogenesis	0.00E+00
8	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
9	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
10	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
11	GO:0015995: chlorophyll biosynthetic process	2.29E-11
12	GO:0015979: photosynthesis	1.45E-08
13	GO:0006824: cobalt ion transport	1.08E-04
14	GO:0000476: maturation of 4.5S rRNA	1.08E-04
15	GO:0000967: rRNA 5'-end processing	1.08E-04
16	GO:0015671: oxygen transport	1.08E-04
17	GO:0043007: maintenance of rDNA	1.08E-04
18	GO:0010028: xanthophyll cycle	1.08E-04
19	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.08E-04
20	GO:0006782: protoporphyrinogen IX biosynthetic process	1.44E-04
21	GO:0034755: iron ion transmembrane transport	2.52E-04
22	GO:0018026: peptidyl-lysine monomethylation	2.52E-04
23	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.52E-04
24	GO:0016122: xanthophyll metabolic process	2.52E-04
25	GO:0006521: regulation of cellular amino acid metabolic process	2.52E-04
26	GO:0034470: ncRNA processing	2.52E-04
27	GO:0006636: unsaturated fatty acid biosynthetic process	3.21E-04
28	GO:0001578: microtubule bundle formation	4.19E-04
29	GO:0010306: rhamnogalacturonan II biosynthetic process	6.01E-04
30	GO:0051639: actin filament network formation	6.01E-04
31	GO:0009741: response to brassinosteroid	7.01E-04
32	GO:0007020: microtubule nucleation	7.98E-04
33	GO:0042938: dipeptide transport	7.98E-04
34	GO:0051764: actin crosslink formation	7.98E-04
35	GO:0051322: anaphase	7.98E-04
36	GO:0009765: photosynthesis, light harvesting	7.98E-04
37	GO:0015994: chlorophyll metabolic process	7.98E-04
38	GO:0034052: positive regulation of plant-type hypersensitive response	1.01E-03
39	GO:0046785: microtubule polymerization	1.01E-03
40	GO:0032973: amino acid export	1.23E-03
41	GO:0006655: phosphatidylglycerol biosynthetic process	1.23E-03
42	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.23E-03
43	GO:0009734: auxin-activated signaling pathway	1.32E-03
44	GO:0009942: longitudinal axis specification	1.47E-03
45	GO:0010189: vitamin E biosynthetic process	1.47E-03
46	GO:0009769: photosynthesis, light harvesting in photosystem II	1.73E-03
47	GO:0050829: defense response to Gram-negative bacterium	1.73E-03
48	GO:0009645: response to low light intensity stimulus	1.73E-03
49	GO:0051510: regulation of unidimensional cell growth	1.73E-03
50	GO:0048528: post-embryonic root development	1.73E-03
51	GO:0043090: amino acid import	1.73E-03
52	GO:0080186: developmental vegetative growth	1.73E-03
53	GO:0009642: response to light intensity	2.00E-03
54	GO:0046620: regulation of organ growth	2.00E-03
55	GO:0043068: positive regulation of programmed cell death	2.00E-03
56	GO:0007186: G-protein coupled receptor signaling pathway	2.28E-03
57	GO:0009657: plastid organization	2.28E-03
58	GO:0007389: pattern specification process	2.28E-03
59	GO:0006631: fatty acid metabolic process	2.36E-03
60	GO:0009640: photomorphogenesis	2.56E-03
61	GO:0010114: response to red light	2.56E-03
62	GO:0009926: auxin polar transport	2.56E-03
63	GO:0019432: triglyceride biosynthetic process	2.57E-03
64	GO:0048507: meristem development	2.57E-03
65	GO:0080144: amino acid homeostasis	2.57E-03
66	GO:0006783: heme biosynthetic process	2.57E-03
67	GO:0042761: very long-chain fatty acid biosynthetic process	2.88E-03
68	GO:0008202: steroid metabolic process	2.88E-03
69	GO:0006779: porphyrin-containing compound biosynthetic process	2.88E-03
70	GO:0009664: plant-type cell wall organization	3.20E-03
71	GO:0006949: syncytium formation	3.20E-03
72	GO:0043085: positive regulation of catalytic activity	3.53E-03
73	GO:0009750: response to fructose	3.53E-03
74	GO:0030148: sphingolipid biosynthetic process	3.53E-03
75	GO:0009698: phenylpropanoid metabolic process	3.53E-03
76	GO:0016024: CDP-diacylglycerol biosynthetic process	3.87E-03
77	GO:0015706: nitrate transport	3.87E-03
78	GO:0007275: multicellular organism development	4.19E-03
79	GO:0030048: actin filament-based movement	4.23E-03
80	GO:0009740: gibberellic acid mediated signaling pathway	4.58E-03
81	GO:0010207: photosystem II assembly	4.59E-03
82	GO:0009887: animal organ morphogenesis	4.59E-03
83	GO:0009934: regulation of meristem structural organization	4.59E-03
84	GO:0051017: actin filament bundle assembly	5.75E-03
85	GO:0006289: nucleotide-excision repair	5.75E-03
86	GO:0006874: cellular calcium ion homeostasis	6.15E-03
87	GO:0043622: cortical microtubule organization	6.15E-03
88	GO:0007017: microtubule-based process	6.15E-03
89	GO:0009768: photosynthesis, light harvesting in photosystem I	6.15E-03
90	GO:0009269: response to desiccation	6.56E-03
91	GO:0009814: defense response, incompatible interaction	6.99E-03
92	GO:0009686: gibberellin biosynthetic process	7.42E-03
93	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.42E-03
94	GO:0009735: response to cytokinin	8.20E-03
95	GO:0070417: cellular response to cold	8.32E-03
96	GO:0007623: circadian rhythm	8.39E-03
97	GO:0055114: oxidation-reduction process	8.84E-03
98	GO:0010305: leaf vascular tissue pattern formation	9.26E-03
99	GO:0006662: glycerol ether metabolic process	9.26E-03
100	GO:0048868: pollen tube development	9.26E-03
101	GO:0007018: microtubule-based movement	9.74E-03
102	GO:0009791: post-embryonic development	1.02E-02
103	GO:0009749: response to glucose	1.02E-02
104	GO:0008654: phospholipid biosynthetic process	1.02E-02
105	GO:0010193: response to ozone	1.07E-02
106	GO:0010583: response to cyclopentenone	1.12E-02
107	GO:1901657: glycosyl compound metabolic process	1.18E-02
108	GO:0010252: auxin homeostasis	1.23E-02
109	GO:0009828: plant-type cell wall loosening	1.23E-02
110	GO:0009826: unidimensional cell growth	1.25E-02
111	GO:0000910: cytokinesis	1.34E-02
112	GO:0009723: response to ethylene	1.51E-02
113	GO:0018298: protein-chromophore linkage	1.68E-02
114	GO:0006811: ion transport	1.80E-02
115	GO:0010218: response to far red light	1.80E-02
116	GO:0009631: cold acclimation	1.86E-02
117	GO:0007568: aging	1.86E-02
118	GO:0009910: negative regulation of flower development	1.86E-02
119	GO:0006865: amino acid transport	1.92E-02
120	GO:0009637: response to blue light	1.99E-02
121	GO:0034599: cellular response to oxidative stress	2.05E-02
122	GO:0006839: mitochondrial transport	2.18E-02
123	GO:0008283: cell proliferation	2.38E-02
124	GO:0009744: response to sucrose	2.38E-02
125	GO:0006629: lipid metabolic process	2.39E-02
126	GO:0048364: root development	2.49E-02
127	GO:0009644: response to high light intensity	2.52E-02
128	GO:0006364: rRNA processing	2.94E-02
129	GO:0006508: proteolysis	2.95E-02
130	GO:0010224: response to UV-B	3.02E-02
131	GO:0006857: oligopeptide transport	3.09E-02
132	GO:0006417: regulation of translation	3.17E-02
133	GO:0043086: negative regulation of catalytic activity	3.32E-02
134	GO:0009626: plant-type hypersensitive response	3.47E-02
135	GO:0042545: cell wall modification	3.70E-02
136	GO:0005975: carbohydrate metabolic process	3.77E-02
137	GO:0006396: RNA processing	3.86E-02
138	GO:0009742: brassinosteroid mediated signaling pathway	3.94E-02
139	GO:0009416: response to light stimulus	4.23E-02
140	GO:0009845: seed germination	4.69E-02
141	GO:0009790: embryo development	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
6	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
7	GO:0034639: L-amino acid efflux transmembrane transporter activity	0.00E+00
8	GO:0004462: lactoylglutathione lyase activity	2.57E-05
9	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.08E-04
10	GO:0004853: uroporphyrinogen decarboxylase activity	1.08E-04
11	GO:0052631: sphingolipid delta-8 desaturase activity	1.08E-04
12	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.08E-04
13	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.08E-04
14	GO:0005344: oxygen transporter activity	1.08E-04
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.08E-04
16	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.08E-04
17	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.52E-04
18	GO:0016630: protochlorophyllide reductase activity	2.52E-04
19	GO:0019172: glyoxalase III activity	2.52E-04
20	GO:0008728: GTP diphosphokinase activity	2.52E-04
21	GO:0016868: intramolecular transferase activity, phosphotransferases	2.52E-04
22	GO:0004312: fatty acid synthase activity	2.52E-04
23	GO:0016805: dipeptidase activity	4.19E-04
24	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	4.19E-04
25	GO:0004180: carboxypeptidase activity	4.19E-04
26	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.01E-04
27	GO:0016851: magnesium chelatase activity	6.01E-04
28	GO:0019201: nucleotide kinase activity	6.01E-04
29	GO:0070628: proteasome binding	7.98E-04
30	GO:0004930: G-protein coupled receptor activity	7.98E-04
31	GO:0009011: starch synthase activity	7.98E-04
32	GO:0016279: protein-lysine N-methyltransferase activity	7.98E-04
33	GO:0042936: dipeptide transporter activity	7.98E-04
34	GO:0051538: 3 iron, 4 sulfur cluster binding	1.01E-03
35	GO:0031593: polyubiquitin binding	1.23E-03
36	GO:0004605: phosphatidate cytidylyltransferase activity	1.23E-03
37	GO:0004017: adenylate kinase activity	1.47E-03
38	GO:0004602: glutathione peroxidase activity	1.47E-03
39	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.28E-03
40	GO:0008142: oxysterol binding	2.28E-03
41	GO:0043621: protein self-association	2.76E-03
42	GO:0009672: auxin:proton symporter activity	2.88E-03
43	GO:0005381: iron ion transmembrane transporter activity	2.88E-03
44	GO:0008047: enzyme activator activity	3.20E-03
45	GO:0010329: auxin efflux transmembrane transporter activity	4.23E-03
46	GO:0003774: motor activity	4.59E-03
47	GO:0005217: intracellular ligand-gated ion channel activity	4.96E-03
48	GO:0004970: ionotropic glutamate receptor activity	4.96E-03
49	GO:0004190: aspartic-type endopeptidase activity	4.96E-03
50	GO:0031409: pigment binding	5.35E-03
51	GO:0043130: ubiquitin binding	5.75E-03
52	GO:0005216: ion channel activity	6.15E-03
53	GO:0033612: receptor serine/threonine kinase binding	6.56E-03
54	GO:0046910: pectinesterase inhibitor activity	7.82E-03
55	GO:0003727: single-stranded RNA binding	7.87E-03
56	GO:0047134: protein-disulfide reductase activity	8.32E-03
57	GO:0008017: microtubule binding	8.79E-03
58	GO:0008536: Ran GTPase binding	9.26E-03
59	GO:0004791: thioredoxin-disulfide reductase activity	9.74E-03
60	GO:0019901: protein kinase binding	1.02E-02
61	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.18E-02
62	GO:0051015: actin filament binding	1.18E-02
63	GO:0003684: damaged DNA binding	1.23E-02
64	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.28E-02
65	GO:0005200: structural constituent of cytoskeleton	1.28E-02
66	GO:0016597: amino acid binding	1.34E-02
67	GO:0016168: chlorophyll binding	1.45E-02
68	GO:0102483: scopolin beta-glucosidase activity	1.56E-02
69	GO:0005096: GTPase activator activity	1.74E-02
70	GO:0008422: beta-glucosidase activity	2.12E-02
71	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.12E-02
72	GO:0004185: serine-type carboxypeptidase activity	2.38E-02
73	GO:0035091: phosphatidylinositol binding	2.52E-02
74	GO:0005215: transporter activity	2.55E-02
75	GO:0016298: lipase activity	3.02E-02
76	GO:0015171: amino acid transmembrane transporter activity	3.17E-02
77	GO:0045330: aspartyl esterase activity	3.17E-02
78	GO:0016491: oxidoreductase activity	3.17E-02
79	GO:0003777: microtubule motor activity	3.17E-02
80	GO:0008289: lipid binding	3.32E-02
81	GO:0005515: protein binding	3.55E-02
82	GO:0004672: protein kinase activity	3.62E-02
83	GO:0030599: pectinesterase activity	3.63E-02
84	GO:0003779: actin binding	3.70E-02
85	GO:0015035: protein disulfide oxidoreductase activity	3.86E-02
86	GO:0016829: lyase activity	4.69E-02
87	GO:0004252: serine-type endopeptidase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009534: chloroplast thylakoid	3.20E-13
3	GO:0009507: chloroplast	2.43E-11
4	GO:0009535: chloroplast thylakoid membrane	1.12E-09
5	GO:0009570: chloroplast stroma	7.05E-08
6	GO:0009543: chloroplast thylakoid lumen	5.05E-06
7	GO:0009941: chloroplast envelope	3.22E-05
8	GO:0030095: chloroplast photosystem II	2.55E-04
9	GO:0010007: magnesium chelatase complex	4.19E-04
10	GO:0032432: actin filament bundle	6.01E-04
11	GO:0009531: secondary cell wall	6.01E-04
12	GO:0009522: photosystem I	7.52E-04
13	GO:0009517: PSII associated light-harvesting complex II	7.98E-04
14	GO:0030660: Golgi-associated vesicle membrane	7.98E-04
15	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	7.98E-04
16	GO:0072686: mitotic spindle	1.01E-03
17	GO:0010005: cortical microtubule, transverse to long axis	1.47E-03
18	GO:0009538: photosystem I reaction center	2.00E-03
19	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.00E-03
20	GO:0031977: thylakoid lumen	2.36E-03
21	GO:0045298: tubulin complex	2.57E-03
22	GO:0005874: microtubule	2.60E-03
23	GO:0031969: chloroplast membrane	2.71E-03
24	GO:0016459: myosin complex	3.20E-03
25	GO:0055028: cortical microtubule	3.20E-03
26	GO:0005765: lysosomal membrane	3.53E-03
27	GO:0005884: actin filament	3.53E-03
28	GO:0005938: cell cortex	4.23E-03
29	GO:0016602: CCAAT-binding factor complex	4.23E-03
30	GO:0009574: preprophase band	4.23E-03
31	GO:0009706: chloroplast inner membrane	4.86E-03
32	GO:0030076: light-harvesting complex	4.96E-03
33	GO:0010287: plastoglobule	5.76E-03
34	GO:0005871: kinesin complex	8.32E-03
35	GO:0009523: photosystem II	1.02E-02
36	GO:0005789: endoplasmic reticulum membrane	1.04E-02
37	GO:0009579: thylakoid	1.15E-02
38	GO:0016021: integral component of membrane	1.16E-02
39	GO:0071944: cell periphery	1.18E-02
40	GO:0009707: chloroplast outer membrane	1.68E-02
41	GO:0000325: plant-type vacuole	1.86E-02
42	GO:0005819: spindle	2.12E-02
43	GO:0010008: endosome membrane	3.39E-02
44	GO:0016020: membrane	3.67E-02
45	GO:0005618: cell wall	4.27E-02
46	GO:0005623: cell	4.52E-02
47	GO:0009524: phragmoplast	4.61E-02