Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G13610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043201: response to leucine0.00E+00
2GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
3GO:0080053: response to phenylalanine0.00E+00
4GO:0080052: response to histidine0.00E+00
5GO:0046680: response to DDT0.00E+00
6GO:0006983: ER overload response0.00E+00
7GO:0046865: terpenoid transport0.00E+00
8GO:0006793: phosphorus metabolic process0.00E+00
9GO:0033587: shikimate biosynthetic process0.00E+00
10GO:0051238: sequestering of metal ion0.00E+00
11GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
12GO:0010055: atrichoblast differentiation0.00E+00
13GO:0071456: cellular response to hypoxia8.72E-07
14GO:0006032: chitin catabolic process1.86E-06
15GO:0009636: response to toxic substance8.47E-06
16GO:0043066: negative regulation of apoptotic process8.68E-06
17GO:0042742: defense response to bacterium9.94E-06
18GO:0016998: cell wall macromolecule catabolic process2.04E-05
19GO:0055114: oxidation-reduction process2.89E-05
20GO:0010204: defense response signaling pathway, resistance gene-independent2.94E-05
21GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway2.99E-05
22GO:0006468: protein phosphorylation3.04E-05
23GO:0051707: response to other organism7.41E-05
24GO:0000272: polysaccharide catabolic process8.61E-05
25GO:0006855: drug transmembrane transport1.04E-04
26GO:0009407: toxin catabolic process3.04E-04
27GO:0060627: regulation of vesicle-mediated transport4.43E-04
28GO:0015760: glucose-6-phosphate transport4.43E-04
29GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.43E-04
30GO:0010726: positive regulation of hydrogen peroxide metabolic process4.43E-04
31GO:0033306: phytol metabolic process4.43E-04
32GO:0000032: cell wall mannoprotein biosynthetic process4.43E-04
33GO:0051775: response to redox state4.43E-04
34GO:0032491: detection of molecule of fungal origin4.43E-04
35GO:0032107: regulation of response to nutrient levels4.43E-04
36GO:0034975: protein folding in endoplasmic reticulum4.43E-04
37GO:0030091: protein repair5.37E-04
38GO:0002229: defense response to oomycetes8.08E-04
39GO:0048569: post-embryonic animal organ development9.56E-04
40GO:0090057: root radial pattern formation9.56E-04
41GO:0009866: induced systemic resistance, ethylene mediated signaling pathway9.56E-04
42GO:0080040: positive regulation of cellular response to phosphate starvation9.56E-04
43GO:0002240: response to molecule of oomycetes origin9.56E-04
44GO:0044419: interspecies interaction between organisms9.56E-04
45GO:0042939: tripeptide transport9.56E-04
46GO:0015712: hexose phosphate transport9.56E-04
47GO:0080026: response to indolebutyric acid9.56E-04
48GO:0060919: auxin influx9.56E-04
49GO:0051592: response to calcium ion9.56E-04
50GO:0009617: response to bacterium1.05E-03
51GO:0009626: plant-type hypersensitive response1.27E-03
52GO:0015692: lead ion transport1.56E-03
53GO:0033591: response to L-ascorbic acid1.56E-03
54GO:0015714: phosphoenolpyruvate transport1.56E-03
55GO:0080168: abscisic acid transport1.56E-03
56GO:0071367: cellular response to brassinosteroid stimulus1.56E-03
57GO:0034051: negative regulation of plant-type hypersensitive response1.56E-03
58GO:0010359: regulation of anion channel activity1.56E-03
59GO:0035436: triose phosphate transmembrane transport1.56E-03
60GO:0051176: positive regulation of sulfur metabolic process1.56E-03
61GO:0010351: lithium ion transport1.56E-03
62GO:0010476: gibberellin mediated signaling pathway1.56E-03
63GO:0010325: raffinose family oligosaccharide biosynthetic process1.56E-03
64GO:0009737: response to abscisic acid1.76E-03
65GO:0002237: response to molecule of bacterial origin1.81E-03
66GO:0070588: calcium ion transmembrane transport2.03E-03
67GO:0010104: regulation of ethylene-activated signaling pathway2.25E-03
68GO:0080024: indolebutyric acid metabolic process2.25E-03
69GO:0006882: cellular zinc ion homeostasis2.25E-03
70GO:0001676: long-chain fatty acid metabolic process2.25E-03
71GO:0046836: glycolipid transport2.25E-03
72GO:0045017: glycerolipid biosynthetic process2.25E-03
73GO:0010116: positive regulation of abscisic acid biosynthetic process2.25E-03
74GO:0009298: GDP-mannose biosynthetic process2.25E-03
75GO:0006874: cellular calcium ion homeostasis2.78E-03
76GO:0009939: positive regulation of gibberellic acid mediated signaling pathway3.03E-03
77GO:0006536: glutamate metabolic process3.03E-03
78GO:0015713: phosphoglycerate transport3.03E-03
79GO:0042938: dipeptide transport3.03E-03
80GO:0010109: regulation of photosynthesis3.03E-03
81GO:0042542: response to hydrogen peroxide3.20E-03
82GO:0009744: response to sucrose3.37E-03
83GO:0000304: response to singlet oxygen3.88E-03
84GO:0034052: positive regulation of plant-type hypersensitive response3.88E-03
85GO:0045487: gibberellin catabolic process3.88E-03
86GO:0007166: cell surface receptor signaling pathway4.33E-03
87GO:0009751: response to salicylic acid4.72E-03
88GO:0010256: endomembrane system organization4.80E-03
89GO:0060918: auxin transport4.80E-03
90GO:1902456: regulation of stomatal opening4.80E-03
91GO:0010315: auxin efflux4.80E-03
92GO:0009117: nucleotide metabolic process4.80E-03
93GO:0002238: response to molecule of fungal origin4.80E-03
94GO:0009643: photosynthetic acclimation4.80E-03
95GO:0050665: hydrogen peroxide biosynthetic process4.80E-03
96GO:0010942: positive regulation of cell death4.80E-03
97GO:0015691: cadmium ion transport4.80E-03
98GO:0009809: lignin biosynthetic process4.93E-03
99GO:0010154: fruit development5.01E-03
100GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response5.79E-03
101GO:0045926: negative regulation of growth5.79E-03
102GO:0009854: oxidative photosynthetic carbon pathway5.79E-03
103GO:0048444: floral organ morphogenesis5.79E-03
104GO:0006979: response to oxidative stress5.83E-03
105GO:0010193: response to ozone6.19E-03
106GO:0009395: phospholipid catabolic process6.85E-03
107GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c6.85E-03
108GO:0030026: cellular manganese ion homeostasis6.85E-03
109GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.85E-03
110GO:0050829: defense response to Gram-negative bacterium6.85E-03
111GO:1902074: response to salt6.85E-03
112GO:0009620: response to fungus6.89E-03
113GO:0019375: galactolipid biosynthetic process7.97E-03
114GO:2000070: regulation of response to water deprivation7.97E-03
115GO:0022900: electron transport chain9.15E-03
116GO:0001558: regulation of cell growth9.15E-03
117GO:0010262: somatic embryogenesis9.15E-03
118GO:0010120: camalexin biosynthetic process9.15E-03
119GO:0009808: lignin metabolic process9.15E-03
120GO:0010200: response to chitin1.00E-02
121GO:0009627: systemic acquired resistance1.00E-02
122GO:0006098: pentose-phosphate shunt1.04E-02
123GO:0019432: triglyceride biosynthetic process1.04E-02
124GO:0010112: regulation of systemic acquired resistance1.04E-02
125GO:0009056: catabolic process1.04E-02
126GO:0006952: defense response1.07E-02
127GO:0016311: dephosphorylation1.12E-02
128GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.17E-02
129GO:0009817: defense response to fungus, incompatible interaction1.18E-02
130GO:0048767: root hair elongation1.24E-02
131GO:0010162: seed dormancy process1.30E-02
132GO:0055062: phosphate ion homeostasis1.30E-02
133GO:0007064: mitotic sister chromatid cohesion1.30E-02
134GO:0006995: cellular response to nitrogen starvation1.30E-02
135GO:0009870: defense response signaling pathway, resistance gene-dependent1.30E-02
136GO:0009688: abscisic acid biosynthetic process1.30E-02
137GO:0043069: negative regulation of programmed cell death1.30E-02
138GO:0010043: response to zinc ion1.36E-02
139GO:0007568: aging1.36E-02
140GO:0016036: cellular response to phosphate starvation1.42E-02
141GO:0000038: very long-chain fatty acid metabolic process1.45E-02
142GO:0009682: induced systemic resistance1.45E-02
143GO:0009089: lysine biosynthetic process via diaminopimelate1.45E-02
144GO:0048229: gametophyte development1.45E-02
145GO:0046686: response to cadmium ion1.48E-02
146GO:0010150: leaf senescence1.56E-02
147GO:0006790: sulfur compound metabolic process1.59E-02
148GO:0002213: defense response to insect1.59E-02
149GO:0016024: CDP-diacylglycerol biosynthetic process1.59E-02
150GO:0055046: microgametogenesis1.74E-02
151GO:0006094: gluconeogenesis1.74E-02
152GO:0006631: fatty acid metabolic process1.78E-02
153GO:0010143: cutin biosynthetic process1.90E-02
154GO:0010540: basipetal auxin transport1.90E-02
155GO:0009753: response to jasmonic acid1.91E-02
156GO:0042343: indole glucosinolate metabolic process2.06E-02
157GO:0019853: L-ascorbic acid biosynthetic process2.06E-02
158GO:0046854: phosphatidylinositol phosphorylation2.06E-02
159GO:0031347: regulation of defense response2.34E-02
160GO:0006812: cation transport2.43E-02
161GO:0050832: defense response to fungus2.47E-02
162GO:0051302: regulation of cell division2.57E-02
163GO:0007165: signal transduction2.70E-02
164GO:0031408: oxylipin biosynthetic process2.75E-02
165GO:0098542: defense response to other organism2.75E-02
166GO:0010431: seed maturation2.75E-02
167GO:0016226: iron-sulfur cluster assembly2.93E-02
168GO:0071215: cellular response to abscisic acid stimulus3.12E-02
169GO:0009686: gibberellin biosynthetic process3.12E-02
170GO:0071369: cellular response to ethylene stimulus3.12E-02
171GO:0010227: floral organ abscission3.12E-02
172GO:0006012: galactose metabolic process3.12E-02
173GO:0006817: phosphate ion transport3.31E-02
174GO:0009561: megagametogenesis3.31E-02
175GO:0080167: response to karrikin3.53E-02
176GO:0009624: response to nematode3.71E-02
177GO:0016310: phosphorylation3.75E-02
178GO:0009958: positive gravitropism3.91E-02
179GO:0006885: regulation of pH3.91E-02
180GO:0009646: response to absence of light4.12E-02
181GO:0048544: recognition of pollen4.12E-02
182GO:0006814: sodium ion transport4.12E-02
183GO:0006623: protein targeting to vacuole4.33E-02
184GO:0009749: response to glucose4.33E-02
185GO:0000302: response to reactive oxygen species4.54E-02
186GO:0009630: gravitropism4.76E-02
187GO:1901657: glycosyl compound metabolic process4.98E-02
188GO:0009845: seed germination5.00E-02
RankGO TermAdjusted P value
1GO:1990837: sequence-specific double-stranded DNA binding0.00E+00
2GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
3GO:0008843: endochitinase activity0.00E+00
4GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
5GO:0035885: exochitinase activity0.00E+00
6GO:0016301: kinase activity5.99E-06
7GO:0008061: chitin binding8.39E-06
8GO:0004568: chitinase activity6.83E-05
9GO:0008559: xenobiotic-transporting ATPase activity8.61E-05
10GO:0004674: protein serine/threonine kinase activity2.40E-04
11GO:0015238: drug transmembrane transporter activity2.81E-04
12GO:0030145: manganese ion binding3.29E-04
13GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.33E-04
14GO:0004144: diacylglycerol O-acyltransferase activity3.33E-04
15GO:0005524: ATP binding3.99E-04
16GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.43E-04
17GO:0004476: mannose-6-phosphate isomerase activity4.43E-04
18GO:0010285: L,L-diaminopimelate aminotransferase activity4.43E-04
19GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.43E-04
20GO:0004364: glutathione transferase activity5.33E-04
21GO:0015297: antiporter activity7.14E-04
22GO:0030246: carbohydrate binding7.37E-04
23GO:0015152: glucose-6-phosphate transmembrane transporter activity9.56E-04
24GO:0050736: O-malonyltransferase activity9.56E-04
25GO:0015036: disulfide oxidoreductase activity9.56E-04
26GO:0042937: tripeptide transporter activity9.56E-04
27GO:0004385: guanylate kinase activity9.56E-04
28GO:0010331: gibberellin binding9.56E-04
29GO:0045543: gibberellin 2-beta-dioxygenase activity9.56E-04
30GO:0008171: O-methyltransferase activity1.07E-03
31GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.18E-03
32GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.56E-03
33GO:0016805: dipeptidase activity1.56E-03
34GO:0071917: triose-phosphate transmembrane transporter activity1.56E-03
35GO:0005388: calcium-transporting ATPase activity1.61E-03
36GO:0050660: flavin adenine dinucleotide binding2.16E-03
37GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.17E-03
38GO:0017089: glycolipid transporter activity2.25E-03
39GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.25E-03
40GO:0008276: protein methyltransferase activity2.25E-03
41GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity2.25E-03
42GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.25E-03
43GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity2.25E-03
44GO:0004351: glutamate decarboxylase activity2.25E-03
45GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.25E-03
46GO:0050661: NADP binding2.88E-03
47GO:0005516: calmodulin binding3.01E-03
48GO:0015369: calcium:proton antiporter activity3.03E-03
49GO:0010328: auxin influx transmembrane transporter activity3.03E-03
50GO:0010279: indole-3-acetic acid amido synthetase activity3.03E-03
51GO:0009916: alternative oxidase activity3.03E-03
52GO:0008891: glycolate oxidase activity3.03E-03
53GO:0015120: phosphoglycerate transmembrane transporter activity3.03E-03
54GO:0015368: calcium:cation antiporter activity3.03E-03
55GO:0004737: pyruvate decarboxylase activity3.03E-03
56GO:0042936: dipeptide transporter activity3.03E-03
57GO:0051861: glycolipid binding3.03E-03
58GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen3.88E-03
59GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity3.88E-03
60GO:0045431: flavonol synthase activity3.88E-03
61GO:0004499: N,N-dimethylaniline monooxygenase activity3.97E-03
62GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.80E-03
63GO:0004866: endopeptidase inhibitor activity4.80E-03
64GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.80E-03
65GO:0030976: thiamine pyrophosphate binding4.80E-03
66GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.79E-03
67GO:0003978: UDP-glucose 4-epimerase activity5.79E-03
68GO:0008113: peptide-methionine (S)-S-oxide reductase activity5.79E-03
69GO:0045735: nutrient reservoir activity6.11E-03
70GO:0016831: carboxy-lyase activity6.85E-03
71GO:0008235: metalloexopeptidase activity6.85E-03
72GO:0102425: myricetin 3-O-glucosyltransferase activity6.85E-03
73GO:0102360: daphnetin 3-O-glucosyltransferase activity6.85E-03
74GO:0008121: ubiquinol-cytochrome-c reductase activity6.85E-03
75GO:0047893: flavonol 3-O-glucosyltransferase activity7.97E-03
76GO:0052747: sinapyl alcohol dehydrogenase activity7.97E-03
77GO:0004033: aldo-keto reductase (NADP) activity7.97E-03
78GO:0015491: cation:cation antiporter activity7.97E-03
79GO:0051213: dioxygenase activity8.99E-03
80GO:0004630: phospholipase D activity9.15E-03
81GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity9.15E-03
82GO:0004683: calmodulin-dependent protein kinase activity1.06E-02
83GO:0008047: enzyme activator activity1.30E-02
84GO:0004129: cytochrome-c oxidase activity1.45E-02
85GO:0004177: aminopeptidase activity1.45E-02
86GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.49E-02
87GO:0045551: cinnamyl-alcohol dehydrogenase activity1.59E-02
88GO:0015114: phosphate ion transmembrane transporter activity1.74E-02
89GO:0010329: auxin efflux transmembrane transporter activity1.74E-02
90GO:0004022: alcohol dehydrogenase (NAD) activity1.74E-02
91GO:0005315: inorganic phosphate transmembrane transporter activity1.74E-02
92GO:0005262: calcium channel activity1.74E-02
93GO:0009055: electron carrier activity1.91E-02
94GO:0005215: transporter activity1.96E-02
95GO:0004970: ionotropic glutamate receptor activity2.06E-02
96GO:0005217: intracellular ligand-gated ion channel activity2.06E-02
97GO:0004190: aspartic-type endopeptidase activity2.06E-02
98GO:0008134: transcription factor binding2.40E-02
99GO:0001046: core promoter sequence-specific DNA binding2.40E-02
100GO:0004601: peroxidase activity2.70E-02
101GO:0016298: lipase activity2.70E-02
102GO:0016491: oxidoreductase activity2.72E-02
103GO:0035251: UDP-glucosyltransferase activity2.75E-02
104GO:0004298: threonine-type endopeptidase activity2.75E-02
105GO:0046872: metal ion binding2.84E-02
106GO:0003756: protein disulfide isomerase activity3.31E-02
107GO:0004672: protein kinase activity3.32E-02
108GO:0005451: monovalent cation:proton antiporter activity3.71E-02
109GO:0005509: calcium ion binding3.78E-02
110GO:0020037: heme binding3.79E-02
111GO:0052689: carboxylic ester hydrolase activity3.99E-02
112GO:0015299: solute:proton antiporter activity4.12E-02
113GO:0010181: FMN binding4.12E-02
114GO:0019901: protein kinase binding4.33E-02
115GO:0015385: sodium:proton antiporter activity4.98E-02
116GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.98E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane4.73E-06
2GO:0005886: plasma membrane2.67E-05
3GO:0031314: extrinsic component of mitochondrial inner membrane9.56E-04
4GO:0005751: mitochondrial respiratory chain complex IV1.56E-03
5GO:0000325: plant-type vacuole2.17E-03
6GO:0030660: Golgi-associated vesicle membrane3.03E-03
7GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane3.03E-03
8GO:0005770: late endosome5.01E-03
9GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane7.97E-03
10GO:0019773: proteasome core complex, alpha-subunit complex9.15E-03
11GO:0005783: endoplasmic reticulum9.64E-03
12GO:0005576: extracellular region1.14E-02
13GO:0005740: mitochondrial envelope1.30E-02
14GO:0005829: cytosol1.44E-02
15GO:0005765: lysosomal membrane1.45E-02
16GO:0005750: mitochondrial respiratory chain complex III1.90E-02
17GO:0031966: mitochondrial membrane2.43E-02
18GO:0070469: respiratory chain2.57E-02
19GO:0005839: proteasome core complex2.75E-02
20GO:0031225: anchored component of membrane2.80E-02
21GO:0005774: vacuolar membrane3.45E-02
22GO:0048046: apoplast3.83E-02
23GO:0071944: cell periphery4.98E-02
Gene type



Gene DE type