Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G13510

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042407: cristae formation0.00E+00
2GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
3GO:0006573: valine metabolic process0.00E+00
4GO:0009946: proximal/distal axis specification0.00E+00
5GO:0015822: ornithine transport0.00E+00
6GO:0016048: detection of temperature stimulus0.00E+00
7GO:0010430: fatty acid omega-oxidation0.00E+00
8GO:0080094: response to trehalose-6-phosphate0.00E+00
9GO:0019253: reductive pentose-phosphate cycle3.64E-08
10GO:0016117: carotenoid biosynthetic process1.49E-05
11GO:0046686: response to cadmium ion3.65E-05
12GO:0019464: glycine decarboxylation via glycine cleavage system6.35E-05
13GO:0009765: photosynthesis, light harvesting6.35E-05
14GO:0006546: glycine catabolic process6.35E-05
15GO:0016123: xanthophyll biosynthetic process1.00E-04
16GO:0042026: protein refolding1.97E-04
17GO:0006458: 'de novo' protein folding1.97E-04
18GO:0080167: response to karrikin2.04E-04
19GO:0006438: valyl-tRNA aminoacylation3.14E-04
20GO:0071370: cellular response to gibberellin stimulus3.14E-04
21GO:0090449: phloem glucosinolate loading3.14E-04
22GO:0006659: phosphatidylserine biosynthetic process3.14E-04
23GO:0006551: leucine metabolic process3.14E-04
24GO:0000066: mitochondrial ornithine transport3.14E-04
25GO:0019510: S-adenosylhomocysteine catabolic process3.14E-04
26GO:0006169: adenosine salvage3.14E-04
27GO:0010597: green leaf volatile biosynthetic process3.14E-04
28GO:1901349: glucosinolate transport3.14E-04
29GO:0045489: pectin biosynthetic process3.22E-04
30GO:0008610: lipid biosynthetic process3.24E-04
31GO:0071555: cell wall organization5.68E-04
32GO:0015712: hexose phosphate transport6.87E-04
33GO:0006423: cysteinyl-tRNA aminoacylation6.87E-04
34GO:1904143: positive regulation of carotenoid biosynthetic process6.87E-04
35GO:0080183: response to photooxidative stress6.87E-04
36GO:0030388: fructose 1,6-bisphosphate metabolic process6.87E-04
37GO:2000123: positive regulation of stomatal complex development6.87E-04
38GO:0010424: DNA methylation on cytosine within a CG sequence6.87E-04
39GO:0010275: NAD(P)H dehydrogenase complex assembly6.87E-04
40GO:0006152: purine nucleoside catabolic process6.87E-04
41GO:0019388: galactose catabolic process6.87E-04
42GO:0033353: S-adenosylmethionine cycle6.87E-04
43GO:1902326: positive regulation of chlorophyll biosynthetic process6.87E-04
44GO:0010069: zygote asymmetric cytokinesis in embryo sac6.87E-04
45GO:0006006: glucose metabolic process9.84E-04
46GO:0009767: photosynthetic electron transport chain9.84E-04
47GO:0035436: triose phosphate transmembrane transport1.11E-03
48GO:0006696: ergosterol biosynthetic process1.11E-03
49GO:0015840: urea transport1.11E-03
50GO:0010338: leaf formation1.11E-03
51GO:2000082: regulation of L-ascorbic acid biosynthetic process1.11E-03
52GO:0006000: fructose metabolic process1.11E-03
53GO:0016051: carbohydrate biosynthetic process1.28E-03
54GO:0006810: transport1.42E-03
55GO:0005975: carbohydrate metabolic process1.54E-03
56GO:0051016: barbed-end actin filament capping1.60E-03
57GO:0009590: detection of gravity1.60E-03
58GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.60E-03
59GO:0010239: chloroplast mRNA processing1.60E-03
60GO:0009052: pentose-phosphate shunt, non-oxidative branch1.60E-03
61GO:0080170: hydrogen peroxide transmembrane transport1.60E-03
62GO:0009695: jasmonic acid biosynthetic process1.68E-03
63GO:0061077: chaperone-mediated protein folding1.84E-03
64GO:0031408: oxylipin biosynthetic process1.84E-03
65GO:0007005: mitochondrion organization2.02E-03
66GO:0009902: chloroplast relocation2.14E-03
67GO:0015713: phosphoglycerate transport2.14E-03
68GO:0006749: glutathione metabolic process2.14E-03
69GO:0034440: lipid oxidation2.14E-03
70GO:0009694: jasmonic acid metabolic process2.14E-03
71GO:0006542: glutamine biosynthetic process2.14E-03
72GO:0019676: ammonia assimilation cycle2.14E-03
73GO:0045088: regulation of innate immune response2.14E-03
74GO:2000038: regulation of stomatal complex development2.14E-03
75GO:0006021: inositol biosynthetic process2.14E-03
76GO:0009294: DNA mediated transformation2.20E-03
77GO:0016120: carotene biosynthetic process2.74E-03
78GO:0010236: plastoquinone biosynthetic process2.74E-03
79GO:0044209: AMP salvage2.74E-03
80GO:0010375: stomatal complex patterning2.74E-03
81GO:0000271: polysaccharide biosynthetic process2.80E-03
82GO:0006342: chromatin silencing3.01E-03
83GO:0006096: glycolytic process3.18E-03
84GO:0009117: nucleotide metabolic process3.38E-03
85GO:0009643: photosynthetic acclimation3.38E-03
86GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.38E-03
87GO:0070814: hydrogen sulfide biosynthetic process3.38E-03
88GO:0006796: phosphate-containing compound metabolic process3.38E-03
89GO:0019252: starch biosynthetic process3.47E-03
90GO:0071554: cell wall organization or biogenesis3.72E-03
91GO:0010583: response to cyclopentenone3.97E-03
92GO:0017148: negative regulation of translation4.06E-03
93GO:0009094: L-phenylalanine biosynthetic process4.06E-03
94GO:1901259: chloroplast rRNA processing4.06E-03
95GO:0009099: valine biosynthetic process4.06E-03
96GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.06E-03
97GO:0009082: branched-chain amino acid biosynthetic process4.06E-03
98GO:0009735: response to cytokinin4.59E-03
99GO:0007267: cell-cell signaling4.79E-03
100GO:0006826: iron ion transport4.80E-03
101GO:0006880: intracellular sequestering of iron ion4.80E-03
102GO:0080027: response to herbivore4.80E-03
103GO:0009416: response to light stimulus5.37E-03
104GO:0045010: actin nucleation5.57E-03
105GO:0000105: histidine biosynthetic process5.57E-03
106GO:0052543: callose deposition in cell wall5.57E-03
107GO:0007155: cell adhesion5.57E-03
108GO:0048564: photosystem I assembly5.57E-03
109GO:0005978: glycogen biosynthetic process5.57E-03
110GO:0048193: Golgi vesicle transport6.39E-03
111GO:0009097: isoleucine biosynthetic process6.39E-03
112GO:0044030: regulation of DNA methylation6.39E-03
113GO:0006002: fructose 6-phosphate metabolic process6.39E-03
114GO:0022900: electron transport chain6.39E-03
115GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.39E-03
116GO:0018298: protein-chromophore linkage7.02E-03
117GO:0006754: ATP biosynthetic process7.24E-03
118GO:0048589: developmental growth7.24E-03
119GO:0009813: flavonoid biosynthetic process7.37E-03
120GO:0010218: response to far red light7.74E-03
121GO:0009407: toxin catabolic process7.74E-03
122GO:0008356: asymmetric cell division8.14E-03
123GO:0043067: regulation of programmed cell death8.14E-03
124GO:0006349: regulation of gene expression by genetic imprinting8.14E-03
125GO:0000103: sulfate assimilation9.07E-03
126GO:0010192: mucilage biosynthetic process9.07E-03
127GO:0051555: flavonol biosynthetic process9.07E-03
128GO:0009970: cellular response to sulfate starvation9.07E-03
129GO:0008152: metabolic process9.16E-03
130GO:0006879: cellular iron ion homeostasis1.00E-02
131GO:0000272: polysaccharide catabolic process1.00E-02
132GO:0018119: peptidyl-cysteine S-nitrosylation1.00E-02
133GO:0048229: gametophyte development1.00E-02
134GO:0010216: maintenance of DNA methylation1.00E-02
135GO:0019684: photosynthesis, light reaction1.00E-02
136GO:0009773: photosynthetic electron transport in photosystem I1.00E-02
137GO:0009617: response to bacterium1.01E-02
138GO:0010114: response to red light1.15E-02
139GO:0009744: response to sucrose1.15E-02
140GO:0051707: response to other organism1.15E-02
141GO:0030036: actin cytoskeleton organization1.21E-02
142GO:0050826: response to freezing1.21E-02
143GO:0006094: gluconeogenesis1.21E-02
144GO:0005986: sucrose biosynthetic process1.21E-02
145GO:0009636: response to toxic substance1.29E-02
146GO:0010207: photosystem II assembly1.32E-02
147GO:0009658: chloroplast organization1.41E-02
148GO:0010039: response to iron ion1.43E-02
149GO:0005985: sucrose metabolic process1.43E-02
150GO:0009833: plant-type primary cell wall biogenesis1.54E-02
151GO:0006833: water transport1.54E-02
152GO:0007010: cytoskeleton organization1.66E-02
153GO:0009944: polarity specification of adaxial/abaxial axis1.66E-02
154GO:0009768: photosynthesis, light harvesting in photosystem I1.78E-02
155GO:0007017: microtubule-based process1.78E-02
156GO:0006418: tRNA aminoacylation for protein translation1.78E-02
157GO:0042742: defense response to bacterium1.82E-02
158GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.93E-02
159GO:0006730: one-carbon metabolic process2.03E-02
160GO:0080092: regulation of pollen tube growth2.03E-02
161GO:0040007: growth2.16E-02
162GO:0015979: photosynthesis2.19E-02
163GO:0006284: base-excision repair2.29E-02
164GO:0009742: brassinosteroid mediated signaling pathway2.35E-02
165GO:0055114: oxidation-reduction process2.42E-02
166GO:0080022: primary root development2.57E-02
167GO:0034220: ion transmembrane transport2.57E-02
168GO:0010197: polar nucleus fusion2.71E-02
169GO:0009741: response to brassinosteroid2.71E-02
170GO:0008360: regulation of cell shape2.71E-02
171GO:0007059: chromosome segregation2.85E-02
172GO:0009646: response to absence of light2.85E-02
173GO:0016042: lipid catabolic process2.92E-02
174GO:0008654: phospholipid biosynthetic process3.00E-02
175GO:0055072: iron ion homeostasis3.00E-02
176GO:0009791: post-embryonic development3.00E-02
177GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.15E-02
178GO:0000302: response to reactive oxygen species3.15E-02
179GO:0032502: developmental process3.30E-02
180GO:0007264: small GTPase mediated signal transduction3.30E-02
181GO:0016032: viral process3.30E-02
182GO:1901657: glycosyl compound metabolic process3.45E-02
183GO:0016125: sterol metabolic process3.61E-02
184GO:0010286: heat acclimation3.77E-02
185GO:0009615: response to virus4.09E-02
186GO:0016126: sterol biosynthetic process4.09E-02
187GO:0009817: defense response to fungus, incompatible interaction4.93E-02
188GO:0030244: cellulose biosynthetic process4.93E-02
RankGO TermAdjusted P value
1GO:0045435: lycopene epsilon cyclase activity0.00E+00
2GO:0047974: guanosine deaminase activity0.00E+00
3GO:0030795: jasmonate O-methyltransferase activity0.00E+00
4GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
5GO:0046905: phytoene synthase activity0.00E+00
6GO:0102078: methyl jasmonate methylesterase activity0.00E+00
7GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
8GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
9GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
10GO:0050613: delta14-sterol reductase activity0.00E+00
11GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
12GO:0004618: phosphoglycerate kinase activity4.48E-06
13GO:0004375: glycine dehydrogenase (decarboxylating) activity3.55E-05
14GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.97E-04
15GO:0004832: valine-tRNA ligase activity3.14E-04
16GO:0051996: squalene synthase activity3.14E-04
17GO:0010313: phytochrome binding3.14E-04
18GO:0090448: glucosinolate:proton symporter activity3.14E-04
19GO:0004001: adenosine kinase activity3.14E-04
20GO:0045486: naringenin 3-dioxygenase activity3.14E-04
21GO:0004400: histidinol-phosphate transaminase activity3.14E-04
22GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.14E-04
23GO:0004013: adenosylhomocysteinase activity3.14E-04
24GO:0003984: acetolactate synthase activity3.14E-04
25GO:0016757: transferase activity, transferring glycosyl groups5.67E-04
26GO:0016597: amino acid binding6.33E-04
27GO:0000064: L-ornithine transmembrane transporter activity6.87E-04
28GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.87E-04
29GO:0004512: inositol-3-phosphate synthase activity6.87E-04
30GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.87E-04
31GO:0010291: carotene beta-ring hydroxylase activity6.87E-04
32GO:0016868: intramolecular transferase activity, phosphotransferases6.87E-04
33GO:0004047: aminomethyltransferase activity6.87E-04
34GO:0004817: cysteine-tRNA ligase activity6.87E-04
35GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.87E-04
36GO:0004614: phosphoglucomutase activity6.87E-04
37GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity6.87E-04
38GO:0046593: mandelonitrile lyase activity6.87E-04
39GO:0044183: protein binding involved in protein folding7.62E-04
40GO:0004148: dihydrolipoyl dehydrogenase activity1.11E-03
41GO:0004751: ribose-5-phosphate isomerase activity1.11E-03
42GO:0004781: sulfate adenylyltransferase (ATP) activity1.11E-03
43GO:0016165: linoleate 13S-lipoxygenase activity1.11E-03
44GO:0071917: triose-phosphate transmembrane transporter activity1.11E-03
45GO:0003913: DNA photolyase activity1.11E-03
46GO:0016787: hydrolase activity1.23E-03
47GO:0008199: ferric iron binding1.60E-03
48GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.60E-03
49GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.60E-03
50GO:0001872: (1->3)-beta-D-glucan binding1.60E-03
51GO:0004322: ferroxidase activity1.60E-03
52GO:0035529: NADH pyrophosphatase activity1.60E-03
53GO:0048027: mRNA 5'-UTR binding1.60E-03
54GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.02E-03
55GO:0015204: urea transmembrane transporter activity2.14E-03
56GO:0015120: phosphoglycerate transmembrane transporter activity2.14E-03
57GO:0047769: arogenate dehydratase activity2.14E-03
58GO:0004664: prephenate dehydratase activity2.14E-03
59GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.14E-03
60GO:0045430: chalcone isomerase activity2.14E-03
61GO:0052793: pectin acetylesterase activity2.14E-03
62GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.74E-03
63GO:0004356: glutamate-ammonia ligase activity2.74E-03
64GO:0045431: flavonol synthase activity2.74E-03
65GO:0008725: DNA-3-methyladenine glycosylase activity2.74E-03
66GO:0005507: copper ion binding2.97E-03
67GO:0016462: pyrophosphatase activity3.38E-03
68GO:0102229: amylopectin maltohydrolase activity3.38E-03
69GO:0042578: phosphoric ester hydrolase activity3.38E-03
70GO:0080030: methyl indole-3-acetate esterase activity3.38E-03
71GO:0019901: protein kinase binding3.47E-03
72GO:0016161: beta-amylase activity4.06E-03
73GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.06E-03
74GO:0051753: mannan synthase activity4.06E-03
75GO:0016832: aldehyde-lyase activity4.06E-03
76GO:0005200: structural constituent of cytoskeleton4.79E-03
77GO:0016722: oxidoreductase activity, oxidizing metal ions4.79E-03
78GO:0043295: glutathione binding4.80E-03
79GO:0004427: inorganic diphosphatase activity4.80E-03
80GO:0009881: photoreceptor activity4.80E-03
81GO:0016413: O-acetyltransferase activity5.07E-03
82GO:0016758: transferase activity, transferring hexosyl groups5.18E-03
83GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.55E-03
84GO:0004714: transmembrane receptor protein tyrosine kinase activity5.57E-03
85GO:0004564: beta-fructofuranosidase activity5.57E-03
86GO:0003843: 1,3-beta-D-glucan synthase activity6.39E-03
87GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.24E-03
88GO:0004575: sucrose alpha-glucosidase activity8.14E-03
89GO:0005089: Rho guanyl-nucleotide exchange factor activity1.00E-02
90GO:0004364: glutathione transferase activity1.10E-02
91GO:0004565: beta-galactosidase activity1.21E-02
92GO:0008081: phosphoric diester hydrolase activity1.21E-02
93GO:0004175: endopeptidase activity1.32E-02
94GO:0046982: protein heterodimerization activity1.38E-02
95GO:0051287: NAD binding1.40E-02
96GO:0016788: hydrolase activity, acting on ester bonds1.45E-02
97GO:0031409: pigment binding1.54E-02
98GO:0031418: L-ascorbic acid binding1.66E-02
99GO:0005528: FK506 binding1.66E-02
100GO:0004650: polygalacturonase activity2.02E-02
101GO:0052689: carboxylic ester hydrolase activity2.10E-02
102GO:0003779: actin binding2.15E-02
103GO:0016760: cellulose synthase (UDP-forming) activity2.16E-02
104GO:0051082: unfolded protein binding2.22E-02
105GO:0004812: aminoacyl-tRNA ligase activity2.43E-02
106GO:0016740: transferase activity2.52E-02
107GO:0019843: rRNA binding2.78E-02
108GO:0005355: glucose transmembrane transporter activity2.85E-02
109GO:0016829: lyase activity3.00E-02
110GO:0048038: quinone binding3.15E-02
111GO:0004518: nuclease activity3.30E-02
112GO:0051015: actin filament binding3.45E-02
113GO:0004672: protein kinase activity3.48E-02
114GO:0016759: cellulose synthase activity3.61E-02
115GO:0008483: transaminase activity3.77E-02
116GO:0015250: water channel activity4.09E-02
117GO:0016168: chlorophyll binding4.25E-02
118GO:0008194: UDP-glycosyltransferase activity4.28E-02
119GO:0030247: polysaccharide binding4.59E-02
120GO:0102483: scopolin beta-glucosidase activity4.59E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0000940: condensed chromosome outer kinetochore0.00E+00
5GO:0009570: chloroplast stroma1.57E-16
6GO:0009507: chloroplast6.04E-16
7GO:0009941: chloroplast envelope1.52E-13
8GO:0009579: thylakoid3.58E-10
9GO:0009535: chloroplast thylakoid membrane2.93E-08
10GO:0031225: anchored component of membrane1.14E-05
11GO:0005960: glycine cleavage complex3.55E-05
12GO:0010319: stromule5.23E-05
13GO:0009654: photosystem II oxygen evolving complex1.40E-04
14GO:0009543: chloroplast thylakoid lumen1.63E-04
15GO:0048046: apoplast2.42E-04
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.78E-04
17GO:0031969: chloroplast membrane9.90E-04
18GO:0030095: chloroplast photosystem II1.11E-03
19GO:0000786: nucleosome1.20E-03
20GO:0005775: vacuolar lumen1.60E-03
21GO:0005794: Golgi apparatus1.89E-03
22GO:0009534: chloroplast thylakoid2.14E-03
23GO:0005618: cell wall2.33E-03
24GO:0046658: anchored component of plasma membrane2.48E-03
25GO:0000790: nuclear chromatin2.59E-03
26GO:0005886: plasma membrane3.00E-03
27GO:0009505: plant-type cell wall3.05E-03
28GO:0010168: ER body3.38E-03
29GO:0000793: condensed chromosome3.38E-03
30GO:0019898: extrinsic component of membrane3.47E-03
31GO:0042807: central vacuole4.80E-03
32GO:0000148: 1,3-beta-D-glucan synthase complex6.39E-03
33GO:0000326: protein storage vacuole6.39E-03
34GO:0009539: photosystem II reaction center6.39E-03
35GO:0045298: tubulin complex7.24E-03
36GO:0000325: plant-type vacuole8.12E-03
37GO:0005876: spindle microtubule8.14E-03
38GO:0016324: apical plasma membrane9.07E-03
39GO:0031977: thylakoid lumen1.06E-02
40GO:0000139: Golgi membrane1.07E-02
41GO:0005856: cytoskeleton1.29E-02
42GO:0030076: light-harvesting complex1.43E-02
43GO:0030176: integral component of endoplasmic reticulum membrane1.43E-02
44GO:0016020: membrane1.61E-02
45GO:0022626: cytosolic ribosome1.76E-02
46GO:0016021: integral component of membrane2.33E-02
47GO:0009536: plastid2.58E-02
48GO:0010287: plastoglobule2.63E-02
49GO:0005773: vacuole2.83E-02
50GO:0009522: photosystem I2.85E-02
51GO:0005576: extracellular region2.93E-02
52GO:0009523: photosystem II3.00E-02
53GO:0005802: trans-Golgi network3.75E-02
54GO:0005778: peroxisomal membrane3.77E-02
55GO:0009707: chloroplast outer membrane4.93E-02
Gene type



Gene DE type