GO Enrichment Analysis of Co-expressed Genes with
AT3G13490
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0008064: regulation of actin polymerization or depolymerization | 0.00E+00 |
| 4 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 5 | GO:0051493: regulation of cytoskeleton organization | 0.00E+00 |
| 6 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 7 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 8 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 9 | GO:0042407: cristae formation | 0.00E+00 |
| 10 | GO:2000605: positive regulation of secondary growth | 0.00E+00 |
| 11 | GO:0032543: mitochondrial translation | 8.97E-06 |
| 12 | GO:0071482: cellular response to light stimulus | 4.53E-05 |
| 13 | GO:0043489: RNA stabilization | 7.39E-05 |
| 14 | GO:0006426: glycyl-tRNA aminoacylation | 7.39E-05 |
| 15 | GO:0006352: DNA-templated transcription, initiation | 9.76E-05 |
| 16 | GO:0009793: embryo development ending in seed dormancy | 1.11E-04 |
| 17 | GO:0071258: cellular response to gravity | 1.77E-04 |
| 18 | GO:0010270: photosystem II oxygen evolving complex assembly | 1.77E-04 |
| 19 | GO:0006695: cholesterol biosynthetic process | 1.77E-04 |
| 20 | GO:0006423: cysteinyl-tRNA aminoacylation | 1.77E-04 |
| 21 | GO:0006457: protein folding | 2.28E-04 |
| 22 | GO:0006418: tRNA aminoacylation for protein translation | 2.37E-04 |
| 23 | GO:0007017: microtubule-based process | 2.37E-04 |
| 24 | GO:0006696: ergosterol biosynthetic process | 2.99E-04 |
| 25 | GO:0010581: regulation of starch biosynthetic process | 2.99E-04 |
| 26 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 2.99E-04 |
| 27 | GO:0016117: carotenoid biosynthetic process | 3.70E-04 |
| 28 | GO:0006424: glutamyl-tRNA aminoacylation | 4.32E-04 |
| 29 | GO:0043572: plastid fission | 4.32E-04 |
| 30 | GO:2001141: regulation of RNA biosynthetic process | 4.32E-04 |
| 31 | GO:0006241: CTP biosynthetic process | 4.32E-04 |
| 32 | GO:0019048: modulation by virus of host morphology or physiology | 4.32E-04 |
| 33 | GO:0006165: nucleoside diphosphate phosphorylation | 4.32E-04 |
| 34 | GO:0006228: UTP biosynthetic process | 4.32E-04 |
| 35 | GO:0031048: chromatin silencing by small RNA | 4.32E-04 |
| 36 | GO:0010088: phloem development | 4.32E-04 |
| 37 | GO:0016556: mRNA modification | 4.32E-04 |
| 38 | GO:0071483: cellular response to blue light | 5.75E-04 |
| 39 | GO:0006085: acetyl-CoA biosynthetic process | 5.75E-04 |
| 40 | GO:0006183: GTP biosynthetic process | 5.75E-04 |
| 41 | GO:0051567: histone H3-K9 methylation | 5.75E-04 |
| 42 | GO:0006564: L-serine biosynthetic process | 7.29E-04 |
| 43 | GO:0045038: protein import into chloroplast thylakoid membrane | 7.29E-04 |
| 44 | GO:0048359: mucilage metabolic process involved in seed coat development | 7.29E-04 |
| 45 | GO:0015995: chlorophyll biosynthetic process | 8.83E-04 |
| 46 | GO:0016458: gene silencing | 8.91E-04 |
| 47 | GO:0006014: D-ribose metabolic process | 8.91E-04 |
| 48 | GO:0006828: manganese ion transport | 8.91E-04 |
| 49 | GO:0009854: oxidative photosynthetic carbon pathway | 1.06E-03 |
| 50 | GO:0009658: chloroplast organization | 1.09E-03 |
| 51 | GO:0045995: regulation of embryonic development | 1.24E-03 |
| 52 | GO:0006955: immune response | 1.24E-03 |
| 53 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.24E-03 |
| 54 | GO:0010928: regulation of auxin mediated signaling pathway | 1.43E-03 |
| 55 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.49E-03 |
| 56 | GO:0032544: plastid translation | 1.63E-03 |
| 57 | GO:0010233: phloem transport | 1.63E-03 |
| 58 | GO:0019430: removal of superoxide radicals | 1.63E-03 |
| 59 | GO:0033384: geranyl diphosphate biosynthetic process | 1.83E-03 |
| 60 | GO:0006783: heme biosynthetic process | 1.83E-03 |
| 61 | GO:0015780: nucleotide-sugar transport | 1.83E-03 |
| 62 | GO:0045337: farnesyl diphosphate biosynthetic process | 1.83E-03 |
| 63 | GO:0043067: regulation of programmed cell death | 2.05E-03 |
| 64 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.05E-03 |
| 65 | GO:0010380: regulation of chlorophyll biosynthetic process | 2.05E-03 |
| 66 | GO:0030422: production of siRNA involved in RNA interference | 2.28E-03 |
| 67 | GO:0045036: protein targeting to chloroplast | 2.28E-03 |
| 68 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.28E-03 |
| 69 | GO:0009073: aromatic amino acid family biosynthetic process | 2.51E-03 |
| 70 | GO:0043085: positive regulation of catalytic activity | 2.51E-03 |
| 71 | GO:0006816: calcium ion transport | 2.51E-03 |
| 72 | GO:0006415: translational termination | 2.51E-03 |
| 73 | GO:0009718: anthocyanin-containing compound biosynthetic process | 3.00E-03 |
| 74 | GO:0010020: chloroplast fission | 3.25E-03 |
| 75 | GO:0090351: seedling development | 3.51E-03 |
| 76 | GO:0009734: auxin-activated signaling pathway | 3.59E-03 |
| 77 | GO:0080147: root hair cell development | 4.06E-03 |
| 78 | GO:0008299: isoprenoid biosynthetic process | 4.34E-03 |
| 79 | GO:0006633: fatty acid biosynthetic process | 4.61E-03 |
| 80 | GO:0016998: cell wall macromolecule catabolic process | 4.63E-03 |
| 81 | GO:0006306: DNA methylation | 4.63E-03 |
| 82 | GO:0009451: RNA modification | 5.18E-03 |
| 83 | GO:0009411: response to UV | 5.23E-03 |
| 84 | GO:0010051: xylem and phloem pattern formation | 6.18E-03 |
| 85 | GO:0010197: polar nucleus fusion | 6.51E-03 |
| 86 | GO:0006342: chromatin silencing | 6.51E-03 |
| 87 | GO:0010305: leaf vascular tissue pattern formation | 6.51E-03 |
| 88 | GO:0008360: regulation of cell shape | 6.51E-03 |
| 89 | GO:0009958: positive gravitropism | 6.51E-03 |
| 90 | GO:0007018: microtubule-based movement | 6.84E-03 |
| 91 | GO:0006814: sodium ion transport | 6.84E-03 |
| 92 | GO:0019252: starch biosynthetic process | 7.19E-03 |
| 93 | GO:0016032: viral process | 7.89E-03 |
| 94 | GO:0007264: small GTPase mediated signal transduction | 7.89E-03 |
| 95 | GO:0051607: defense response to virus | 9.36E-03 |
| 96 | GO:0010027: thylakoid membrane organization | 9.74E-03 |
| 97 | GO:0009816: defense response to bacterium, incompatible interaction | 1.01E-02 |
| 98 | GO:0045454: cell redox homeostasis | 1.16E-02 |
| 99 | GO:0048481: plant ovule development | 1.17E-02 |
| 100 | GO:0009631: cold acclimation | 1.30E-02 |
| 101 | GO:0006508: proteolysis | 1.38E-02 |
| 102 | GO:0045087: innate immune response | 1.39E-02 |
| 103 | GO:0016051: carbohydrate biosynthetic process | 1.39E-02 |
| 104 | GO:0009637: response to blue light | 1.39E-02 |
| 105 | GO:0009853: photorespiration | 1.39E-02 |
| 106 | GO:0006629: lipid metabolic process | 1.44E-02 |
| 107 | GO:0006631: fatty acid metabolic process | 1.57E-02 |
| 108 | GO:0042542: response to hydrogen peroxide | 1.61E-02 |
| 109 | GO:0010114: response to red light | 1.66E-02 |
| 110 | GO:0008643: carbohydrate transport | 1.76E-02 |
| 111 | GO:0009585: red, far-red light phototransduction | 2.05E-02 |
| 112 | GO:0006813: potassium ion transport | 2.05E-02 |
| 113 | GO:0046686: response to cadmium ion | 2.07E-02 |
| 114 | GO:0006417: regulation of translation | 2.21E-02 |
| 115 | GO:0006396: RNA processing | 2.69E-02 |
| 116 | GO:0009742: brassinosteroid mediated signaling pathway | 2.75E-02 |
| 117 | GO:0042744: hydrogen peroxide catabolic process | 3.39E-02 |
| 118 | GO:0016310: phosphorylation | 3.64E-02 |
| 119 | GO:0016036: cellular response to phosphate starvation | 3.70E-02 |
| 120 | GO:0040008: regulation of growth | 3.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 3 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 4 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 5 | GO:0005048: signal sequence binding | 0.00E+00 |
| 6 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 7 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 8 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 9 | GO:0002161: aminoacyl-tRNA editing activity | 1.17E-06 |
| 10 | GO:0001053: plastid sigma factor activity | 5.37E-06 |
| 11 | GO:0016987: sigma factor activity | 5.37E-06 |
| 12 | GO:0008237: metallopeptidase activity | 3.43E-05 |
| 13 | GO:0005524: ATP binding | 5.79E-05 |
| 14 | GO:0004820: glycine-tRNA ligase activity | 7.39E-05 |
| 15 | GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | 7.39E-05 |
| 16 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 7.39E-05 |
| 17 | GO:0042834: peptidoglycan binding | 7.39E-05 |
| 18 | GO:0004655: porphobilinogen synthase activity | 7.39E-05 |
| 19 | GO:0051996: squalene synthase activity | 7.39E-05 |
| 20 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 1.77E-04 |
| 21 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.77E-04 |
| 22 | GO:0004817: cysteine-tRNA ligase activity | 1.77E-04 |
| 23 | GO:0000774: adenyl-nucleotide exchange factor activity | 1.77E-04 |
| 24 | GO:0004176: ATP-dependent peptidase activity | 2.61E-04 |
| 25 | GO:0051082: unfolded protein binding | 3.18E-04 |
| 26 | GO:0004812: aminoacyl-tRNA ligase activity | 3.70E-04 |
| 27 | GO:0016149: translation release factor activity, codon specific | 4.32E-04 |
| 28 | GO:0004550: nucleoside diphosphate kinase activity | 4.32E-04 |
| 29 | GO:0008508: bile acid:sodium symporter activity | 4.32E-04 |
| 30 | GO:0003878: ATP citrate synthase activity | 4.32E-04 |
| 31 | GO:0035197: siRNA binding | 4.32E-04 |
| 32 | GO:0005319: lipid transporter activity | 5.75E-04 |
| 33 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 5.75E-04 |
| 34 | GO:0005200: structural constituent of cytoskeleton | 6.76E-04 |
| 35 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 7.29E-04 |
| 36 | GO:0003729: mRNA binding | 1.05E-03 |
| 37 | GO:0051920: peroxiredoxin activity | 1.06E-03 |
| 38 | GO:0102391: decanoate--CoA ligase activity | 1.06E-03 |
| 39 | GO:0004747: ribokinase activity | 1.06E-03 |
| 40 | GO:0004222: metalloendopeptidase activity | 1.07E-03 |
| 41 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.24E-03 |
| 42 | GO:0016831: carboxy-lyase activity | 1.24E-03 |
| 43 | GO:0016209: antioxidant activity | 1.43E-03 |
| 44 | GO:0008312: 7S RNA binding | 1.43E-03 |
| 45 | GO:0004033: aldo-keto reductase (NADP) activity | 1.43E-03 |
| 46 | GO:0008865: fructokinase activity | 1.43E-03 |
| 47 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.81E-03 |
| 48 | GO:0003747: translation release factor activity | 1.83E-03 |
| 49 | GO:0004337: geranyltranstransferase activity | 1.83E-03 |
| 50 | GO:0005384: manganese ion transmembrane transporter activity | 2.05E-03 |
| 51 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.08E-03 |
| 52 | GO:0008047: enzyme activator activity | 2.28E-03 |
| 53 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.51E-03 |
| 54 | GO:0004161: dimethylallyltranstransferase activity | 2.51E-03 |
| 55 | GO:0004521: endoribonuclease activity | 2.75E-03 |
| 56 | GO:0000049: tRNA binding | 2.75E-03 |
| 57 | GO:0008081: phosphoric diester hydrolase activity | 3.00E-03 |
| 58 | GO:0015095: magnesium ion transmembrane transporter activity | 3.00E-03 |
| 59 | GO:0031072: heat shock protein binding | 3.00E-03 |
| 60 | GO:0008266: poly(U) RNA binding | 3.25E-03 |
| 61 | GO:0019843: rRNA binding | 3.68E-03 |
| 62 | GO:0016887: ATPase activity | 4.06E-03 |
| 63 | GO:0008324: cation transmembrane transporter activity | 4.34E-03 |
| 64 | GO:0051087: chaperone binding | 4.34E-03 |
| 65 | GO:0008514: organic anion transmembrane transporter activity | 5.54E-03 |
| 66 | GO:0004791: thioredoxin-disulfide reductase activity | 6.84E-03 |
| 67 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 8.25E-03 |
| 68 | GO:0016597: amino acid binding | 9.36E-03 |
| 69 | GO:0016301: kinase activity | 9.76E-03 |
| 70 | GO:0008236: serine-type peptidase activity | 1.13E-02 |
| 71 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 1.13E-02 |
| 72 | GO:0042803: protein homodimerization activity | 1.22E-02 |
| 73 | GO:0003746: translation elongation factor activity | 1.39E-02 |
| 74 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.43E-02 |
| 75 | GO:0005515: protein binding | 1.50E-02 |
| 76 | GO:0004519: endonuclease activity | 1.56E-02 |
| 77 | GO:0043621: protein self-association | 1.76E-02 |
| 78 | GO:0051287: NAD binding | 1.90E-02 |
| 79 | GO:0003777: microtubule motor activity | 2.21E-02 |
| 80 | GO:0003735: structural constituent of ribosome | 2.81E-02 |
| 81 | GO:0016829: lyase activity | 3.27E-02 |
| 82 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.70E-02 |
| 83 | GO:0008017: microtubule binding | 4.02E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070971: endoplasmic reticulum exit site | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 5.00E-26 |
| 3 | GO:0009570: chloroplast stroma | 2.09E-21 |
| 4 | GO:0009941: chloroplast envelope | 2.99E-16 |
| 5 | GO:0045298: tubulin complex | 5.64E-05 |
| 6 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 7.39E-05 |
| 7 | GO:0043190: ATP-binding cassette (ABC) transporter complex | 7.39E-05 |
| 8 | GO:0080085: signal recognition particle, chloroplast targeting | 1.77E-04 |
| 9 | GO:0031969: chloroplast membrane | 1.93E-04 |
| 10 | GO:0009579: thylakoid | 1.95E-04 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 4.25E-04 |
| 12 | GO:0005719: nuclear euchromatin | 4.32E-04 |
| 13 | GO:0009346: citrate lyase complex | 4.32E-04 |
| 14 | GO:0009535: chloroplast thylakoid membrane | 5.15E-04 |
| 15 | GO:0030529: intracellular ribonucleoprotein complex | 7.56E-04 |
| 16 | GO:0000793: condensed chromosome | 8.91E-04 |
| 17 | GO:0005762: mitochondrial large ribosomal subunit | 1.06E-03 |
| 18 | GO:0000794: condensed nuclear chromosome | 1.24E-03 |
| 19 | GO:0009533: chloroplast stromal thylakoid | 1.24E-03 |
| 20 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.63E-03 |
| 21 | GO:0015030: Cajal body | 2.05E-03 |
| 22 | GO:0000311: plastid large ribosomal subunit | 2.75E-03 |
| 23 | GO:0009706: chloroplast inner membrane | 2.95E-03 |
| 24 | GO:0000312: plastid small ribosomal subunit | 3.25E-03 |
| 25 | GO:0009536: plastid | 3.44E-03 |
| 26 | GO:0010287: plastoglobule | 3.49E-03 |
| 27 | GO:0005759: mitochondrial matrix | 4.61E-03 |
| 28 | GO:0009532: plastid stroma | 4.63E-03 |
| 29 | GO:0005871: kinesin complex | 5.86E-03 |
| 30 | GO:0046658: anchored component of plasma membrane | 6.69E-03 |
| 31 | GO:0019898: extrinsic component of membrane | 7.19E-03 |
| 32 | GO:0009295: nucleoid | 8.98E-03 |
| 33 | GO:0009707: chloroplast outer membrane | 1.17E-02 |
| 34 | GO:0031977: thylakoid lumen | 1.57E-02 |
| 35 | GO:0043231: intracellular membrane-bounded organelle | 1.58E-02 |
| 36 | GO:0005654: nucleoplasm | 3.04E-02 |
| 37 | GO:0009534: chloroplast thylakoid | 3.08E-02 |
| 38 | GO:0005623: cell | 3.16E-02 |
| 39 | GO:0022627: cytosolic small ribosomal subunit | 4.75E-02 |