Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G13380

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006105: succinate metabolic process0.00E+00
2GO:0019484: beta-alanine catabolic process0.00E+00
3GO:0033587: shikimate biosynthetic process0.00E+00
4GO:0019481: L-alanine catabolic process, by transamination0.00E+00
5GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
6GO:0042908: xenobiotic transport0.00E+00
7GO:0045185: maintenance of protein location0.00E+00
8GO:0006182: cGMP biosynthetic process0.00E+00
9GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
10GO:0006592: ornithine biosynthetic process0.00E+00
11GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
12GO:0046109: uridine biosynthetic process0.00E+00
13GO:0046686: response to cadmium ion2.79E-08
14GO:0010150: leaf senescence1.51E-06
15GO:0071456: cellular response to hypoxia4.83E-06
16GO:0001676: long-chain fatty acid metabolic process2.55E-05
17GO:0006542: glutamine biosynthetic process4.61E-05
18GO:2000377: regulation of reactive oxygen species metabolic process8.09E-05
19GO:0051707: response to other organism1.59E-04
20GO:0009819: drought recovery2.45E-04
21GO:0009617: response to bacterium2.53E-04
22GO:0009865: pollen tube adhesion2.60E-04
23GO:0035344: hypoxanthine transport2.60E-04
24GO:0006540: glutamate decarboxylation to succinate2.60E-04
25GO:0010265: SCF complex assembly2.60E-04
26GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport2.60E-04
27GO:0098721: uracil import across plasma membrane2.60E-04
28GO:0098702: adenine import across plasma membrane2.60E-04
29GO:0035266: meristem growth2.60E-04
30GO:0098710: guanine import across plasma membrane2.60E-04
31GO:0009450: gamma-aminobutyric acid catabolic process2.60E-04
32GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway2.60E-04
33GO:0007292: female gamete generation2.60E-04
34GO:1990641: response to iron ion starvation2.60E-04
35GO:0000303: response to superoxide2.60E-04
36GO:0099132: ATP hydrolysis coupled cation transmembrane transport2.60E-04
37GO:0006468: protein phosphorylation4.43E-04
38GO:0042128: nitrate assimilation5.54E-04
39GO:0006212: uracil catabolic process5.74E-04
40GO:0006101: citrate metabolic process5.74E-04
41GO:0019374: galactolipid metabolic process5.74E-04
42GO:0019483: beta-alanine biosynthetic process5.74E-04
43GO:0051788: response to misfolded protein5.74E-04
44GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine5.74E-04
45GO:0051258: protein polymerization5.74E-04
46GO:0060919: auxin influx5.74E-04
47GO:0042325: regulation of phosphorylation5.74E-04
48GO:0019441: tryptophan catabolic process to kynurenine5.74E-04
49GO:0031648: protein destabilization5.74E-04
50GO:0010033: response to organic substance5.74E-04
51GO:0050994: regulation of lipid catabolic process5.74E-04
52GO:0009866: induced systemic resistance, ethylene mediated signaling pathway5.74E-04
53GO:0012501: programmed cell death6.67E-04
54GO:0009817: defense response to fungus, incompatible interaction6.75E-04
55GO:0055046: microgametogenesis7.57E-04
56GO:0006499: N-terminal protein myristoylation7.64E-04
57GO:0010498: proteasomal protein catabolic process9.31E-04
58GO:0010359: regulation of anion channel activity9.31E-04
59GO:0061158: 3'-UTR-mediated mRNA destabilization9.31E-04
60GO:0080055: low-affinity nitrate transport9.31E-04
61GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway9.31E-04
62GO:0060968: regulation of gene silencing9.31E-04
63GO:1900055: regulation of leaf senescence9.31E-04
64GO:0042742: defense response to bacterium1.01E-03
65GO:0006979: response to oxidative stress1.03E-03
66GO:0043481: anthocyanin accumulation in tissues in response to UV light1.33E-03
67GO:0006809: nitric oxide biosynthetic process1.33E-03
68GO:0009399: nitrogen fixation1.33E-03
69GO:0015700: arsenite transport1.33E-03
70GO:0010116: positive regulation of abscisic acid biosynthetic process1.33E-03
71GO:0048194: Golgi vesicle budding1.33E-03
72GO:0006020: inositol metabolic process1.33E-03
73GO:0009052: pentose-phosphate shunt, non-oxidative branch1.33E-03
74GO:0080142: regulation of salicylic acid biosynthetic process1.78E-03
75GO:0033320: UDP-D-xylose biosynthetic process1.78E-03
76GO:0006536: glutamate metabolic process1.78E-03
77GO:0009561: megagametogenesis1.82E-03
78GO:0006097: glyoxylate cycle2.27E-03
79GO:0000304: response to singlet oxygen2.27E-03
80GO:0009697: salicylic acid biosynthetic process2.27E-03
81GO:0048367: shoot system development2.33E-03
82GO:0009620: response to fungus2.53E-03
83GO:1902456: regulation of stomatal opening2.80E-03
84GO:0010315: auxin efflux2.80E-03
85GO:0006014: D-ribose metabolic process2.80E-03
86GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.80E-03
87GO:0006561: proline biosynthetic process2.80E-03
88GO:0048827: phyllome development2.80E-03
89GO:0048232: male gamete generation2.80E-03
90GO:0043248: proteasome assembly2.80E-03
91GO:0042732: D-xylose metabolic process2.80E-03
92GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.97E-03
93GO:0050829: defense response to Gram-negative bacterium3.97E-03
94GO:1902074: response to salt3.97E-03
95GO:1900056: negative regulation of leaf senescence3.97E-03
96GO:0010029: regulation of seed germination4.32E-03
97GO:0009816: defense response to bacterium, incompatible interaction4.32E-03
98GO:0009627: systemic acquired resistance4.56E-03
99GO:0030091: protein repair4.60E-03
100GO:0006605: protein targeting4.60E-03
101GO:0010078: maintenance of root meristem identity4.60E-03
102GO:0006102: isocitrate metabolic process4.60E-03
103GO:0006644: phospholipid metabolic process4.60E-03
104GO:0009827: plant-type cell wall modification5.27E-03
105GO:0010120: camalexin biosynthetic process5.27E-03
106GO:0006526: arginine biosynthetic process5.27E-03
107GO:0010204: defense response signaling pathway, resistance gene-independent5.27E-03
108GO:0043562: cellular response to nitrogen levels5.27E-03
109GO:0009808: lignin metabolic process5.27E-03
110GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.27E-03
111GO:0008219: cell death5.32E-03
112GO:0048364: root development5.52E-03
113GO:0006098: pentose-phosphate shunt5.98E-03
114GO:0010112: regulation of systemic acquired resistance5.98E-03
115GO:0046685: response to arsenic-containing substance5.98E-03
116GO:0009051: pentose-phosphate shunt, oxidative branch5.98E-03
117GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process6.56E-03
118GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.71E-03
119GO:0045087: innate immune response6.74E-03
120GO:0007166: cell surface receptor signaling pathway6.74E-03
121GO:0009867: jasmonic acid mediated signaling pathway6.74E-03
122GO:0006099: tricarboxylic acid cycle7.05E-03
123GO:0009870: defense response signaling pathway, resistance gene-dependent7.47E-03
124GO:0043069: negative regulation of programmed cell death7.47E-03
125GO:0048829: root cap development7.47E-03
126GO:0006631: fatty acid metabolic process8.02E-03
127GO:0009089: lysine biosynthetic process via diaminopimelate8.27E-03
128GO:0009682: induced systemic resistance8.27E-03
129GO:0018119: peptidyl-cysteine S-nitrosylation8.27E-03
130GO:0048765: root hair cell differentiation8.27E-03
131GO:0010015: root morphogenesis8.27E-03
132GO:0015706: nitrate transport9.09E-03
133GO:0006890: retrograde vesicle-mediated transport, Golgi to ER9.09E-03
134GO:0000266: mitochondrial fission9.09E-03
135GO:0006790: sulfur compound metabolic process9.09E-03
136GO:0010102: lateral root morphogenesis9.94E-03
137GO:0006006: glucose metabolic process9.94E-03
138GO:0006807: nitrogen compound metabolic process9.94E-03
139GO:0009718: anthocyanin-containing compound biosynthetic process9.94E-03
140GO:0006855: drug transmembrane transport1.02E-02
141GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.06E-02
142GO:0006541: glutamine metabolic process1.08E-02
143GO:0002237: response to molecule of bacterial origin1.08E-02
144GO:0009933: meristem structural organization1.08E-02
145GO:0010540: basipetal auxin transport1.08E-02
146GO:0006970: response to osmotic stress1.09E-02
147GO:0009846: pollen germination1.09E-02
148GO:0007049: cell cycle1.14E-02
149GO:0007030: Golgi organization1.17E-02
150GO:0005985: sucrose metabolic process1.17E-02
151GO:0090351: seedling development1.17E-02
152GO:0070588: calcium ion transmembrane transport1.17E-02
153GO:0046854: phosphatidylinositol phosphorylation1.17E-02
154GO:0009225: nucleotide-sugar metabolic process1.17E-02
155GO:0009809: lignin biosynthetic process1.18E-02
156GO:0080167: response to karrikin1.30E-02
157GO:0005992: trehalose biosynthetic process1.36E-02
158GO:0006096: glycolytic process1.39E-02
159GO:0046777: protein autophosphorylation1.42E-02
160GO:0031408: oxylipin biosynthetic process1.56E-02
161GO:0016998: cell wall macromolecule catabolic process1.56E-02
162GO:0030433: ubiquitin-dependent ERAD pathway1.67E-02
163GO:0031348: negative regulation of defense response1.67E-02
164GO:0018105: peptidyl-serine phosphorylation1.73E-02
165GO:0010227: floral organ abscission1.77E-02
166GO:0006012: galactose metabolic process1.77E-02
167GO:0009742: brassinosteroid mediated signaling pathway1.78E-02
168GO:0009306: protein secretion1.88E-02
169GO:0010584: pollen exine formation1.88E-02
170GO:0032259: methylation2.02E-02
171GO:0016042: lipid catabolic process2.06E-02
172GO:0009751: response to salicylic acid2.10E-02
173GO:0042335: cuticle development2.11E-02
174GO:0010087: phloem or xylem histogenesis2.11E-02
175GO:0010154: fruit development2.22E-02
176GO:0008360: regulation of cell shape2.22E-02
177GO:0042752: regulation of circadian rhythm2.34E-02
178GO:0010183: pollen tube guidance2.46E-02
179GO:0019252: starch biosynthetic process2.46E-02
180GO:0071554: cell wall organization or biogenesis2.58E-02
181GO:0000302: response to reactive oxygen species2.58E-02
182GO:0002229: defense response to oomycetes2.58E-02
183GO:0010193: response to ozone2.58E-02
184GO:0006635: fatty acid beta-oxidation2.58E-02
185GO:0006633: fatty acid biosynthetic process2.64E-02
186GO:0016032: viral process2.70E-02
187GO:0009630: gravitropism2.70E-02
188GO:0010583: response to cyclopentenone2.70E-02
189GO:0040008: regulation of growth2.77E-02
190GO:0050832: defense response to fungus2.80E-02
191GO:0006914: autophagy2.96E-02
192GO:0051607: defense response to virus3.22E-02
193GO:0009734: auxin-activated signaling pathway3.27E-02
194GO:0001666: response to hypoxia3.35E-02
195GO:0055114: oxidation-reduction process3.45E-02
196GO:0009607: response to biotic stimulus3.49E-02
197GO:0006952: defense response3.88E-02
198GO:0016311: dephosphorylation3.91E-02
199GO:0016049: cell growth3.91E-02
200GO:0030244: cellulose biosynthetic process4.05E-02
201GO:0010311: lateral root formation4.20E-02
202GO:0048767: root hair elongation4.20E-02
203GO:0009813: flavonoid biosynthetic process4.20E-02
204GO:0009407: toxin catabolic process4.34E-02
205GO:0010119: regulation of stomatal movement4.49E-02
206GO:0016051: carbohydrate biosynthetic process4.79E-02
207GO:0009860: pollen tube growth4.81E-02
RankGO TermAdjusted P value
1GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
2GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
3GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity0.00E+00
4GO:0008777: acetylornithine deacetylase activity0.00E+00
5GO:0016504: peptidase activator activity0.00E+00
6GO:0005548: phospholipid transporter activity0.00E+00
7GO:0003837: beta-ureidopropionase activity0.00E+00
8GO:0070577: lysine-acetylated histone binding0.00E+00
9GO:0005524: ATP binding1.67E-07
10GO:0004383: guanylate cyclase activity1.13E-05
11GO:0004674: protein serine/threonine kinase activity1.99E-05
12GO:0016301: kinase activity2.33E-05
13GO:0008559: xenobiotic-transporting ATPase activity2.55E-05
14GO:0004356: glutamate-ammonia ligase activity7.32E-05
15GO:0004012: phospholipid-translocating ATPase activity1.47E-04
16GO:0015208: guanine transmembrane transporter activity2.60E-04
17GO:0015294: solute:cation symporter activity2.60E-04
18GO:0071992: phytochelatin transmembrane transporter activity2.60E-04
19GO:0015446: ATPase-coupled arsenite transmembrane transporter activity2.60E-04
20GO:0003867: 4-aminobutyrate transaminase activity2.60E-04
21GO:0015207: adenine transmembrane transporter activity2.60E-04
22GO:0019707: protein-cysteine S-acyltransferase activity2.60E-04
23GO:0010285: L,L-diaminopimelate aminotransferase activity2.60E-04
24GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.60E-04
25GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity2.60E-04
26GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.60E-04
27GO:0030955: potassium ion binding4.33E-04
28GO:0004743: pyruvate kinase activity4.33E-04
29GO:0050660: flavin adenine dinucleotide binding5.38E-04
30GO:0004061: arylformamidase activity5.74E-04
31GO:0015036: disulfide oxidoreductase activity5.74E-04
32GO:0003994: aconitate hydratase activity5.74E-04
33GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism7.57E-04
34GO:0005509: calcium ion binding8.47E-04
35GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity9.31E-04
36GO:0004751: ribose-5-phosphate isomerase activity9.31E-04
37GO:0016805: dipeptidase activity9.31E-04
38GO:0080054: low-affinity nitrate transmembrane transporter activity9.31E-04
39GO:0005047: signal recognition particle binding9.31E-04
40GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.33E-03
41GO:0016656: monodehydroascorbate reductase (NADH) activity1.33E-03
42GO:0001653: peptide receptor activity1.33E-03
43GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.53E-03
44GO:0070628: proteasome binding1.78E-03
45GO:0003995: acyl-CoA dehydrogenase activity1.78E-03
46GO:0010328: auxin influx transmembrane transporter activity1.78E-03
47GO:0004345: glucose-6-phosphate dehydrogenase activity1.78E-03
48GO:0015210: uracil transmembrane transporter activity1.78E-03
49GO:0005516: calmodulin binding1.91E-03
50GO:0000287: magnesium ion binding2.00E-03
51GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.27E-03
52GO:0003997: acyl-CoA oxidase activity2.27E-03
53GO:0045431: flavonol synthase activity2.27E-03
54GO:0036402: proteasome-activating ATPase activity2.80E-03
55GO:0048040: UDP-glucuronate decarboxylase activity2.80E-03
56GO:0061630: ubiquitin protein ligase activity3.09E-03
57GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.36E-03
58GO:0102391: decanoate--CoA ligase activity3.36E-03
59GO:0003950: NAD+ ADP-ribosyltransferase activity3.36E-03
60GO:0004747: ribokinase activity3.36E-03
61GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.36E-03
62GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.36E-03
63GO:0051920: peroxiredoxin activity3.36E-03
64GO:0070403: NAD+ binding3.36E-03
65GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.36E-03
66GO:0004620: phospholipase activity3.97E-03
67GO:0004467: long-chain fatty acid-CoA ligase activity3.97E-03
68GO:0008235: metalloexopeptidase activity3.97E-03
69GO:0009931: calcium-dependent protein serine/threonine kinase activity4.56E-03
70GO:0004033: aldo-keto reductase (NADP) activity4.60E-03
71GO:0008865: fructokinase activity4.60E-03
72GO:0004714: transmembrane receptor protein tyrosine kinase activity4.60E-03
73GO:0016209: antioxidant activity4.60E-03
74GO:0004034: aldose 1-epimerase activity4.60E-03
75GO:0030247: polysaccharide binding4.80E-03
76GO:0004683: calmodulin-dependent protein kinase activity4.80E-03
77GO:0008757: S-adenosylmethionine-dependent methyltransferase activity5.06E-03
78GO:0003843: 1,3-beta-D-glucan synthase activity5.27E-03
79GO:0005507: copper ion binding6.12E-03
80GO:0016614: oxidoreductase activity, acting on CH-OH group of donors6.15E-03
81GO:0030145: manganese ion binding6.15E-03
82GO:0045309: protein phosphorylated amino acid binding6.71E-03
83GO:0047617: acyl-CoA hydrolase activity6.71E-03
84GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.71E-03
85GO:0008171: O-methyltransferase activity7.47E-03
86GO:0050661: NADP binding7.69E-03
87GO:0019904: protein domain specific binding8.27E-03
88GO:0004177: aminopeptidase activity8.27E-03
89GO:0005388: calcium-transporting ATPase activity9.94E-03
90GO:0010329: auxin efflux transmembrane transporter activity9.94E-03
91GO:0019888: protein phosphatase regulator activity9.94E-03
92GO:0017025: TBP-class protein binding1.17E-02
93GO:0005215: transporter activity1.34E-02
94GO:0043130: ubiquitin binding1.36E-02
95GO:0045735: nutrient reservoir activity1.39E-02
96GO:0033612: receptor serine/threonine kinase binding1.56E-02
97GO:0019706: protein-cysteine S-palmitoyltransferase activity1.56E-02
98GO:0004499: N,N-dimethylaniline monooxygenase activity1.88E-02
99GO:0003727: single-stranded RNA binding1.88E-02
100GO:0003924: GTPase activity2.13E-02
101GO:0030170: pyridoxal phosphate binding2.33E-02
102GO:0009055: electron carrier activity2.33E-02
103GO:0016853: isomerase activity2.34E-02
104GO:0005525: GTP binding2.60E-02
105GO:0008483: transaminase activity3.09E-02
106GO:0008237: metallopeptidase activity3.09E-02
107GO:0016413: O-acetyltransferase activity3.22E-02
108GO:0051213: dioxygenase activity3.35E-02
109GO:0016887: ATPase activity3.68E-02
110GO:0004004: ATP-dependent RNA helicase activity3.77E-02
111GO:0015238: drug transmembrane transporter activity4.20E-02
112GO:0008168: methyltransferase activity4.31E-02
113GO:0004601: peroxidase activity4.48E-02
114GO:0050897: cobalt ion binding4.49E-02
115GO:0043531: ADP binding4.90E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0005886: plasma membrane6.52E-07
3GO:0005829: cytosol6.29E-06
4GO:0000138: Golgi trans cisterna2.60E-04
5GO:0045252: oxoglutarate dehydrogenase complex2.60E-04
6GO:0031314: extrinsic component of mitochondrial inner membrane5.74E-04
7GO:0000325: plant-type vacuole8.10E-04
8GO:0005782: peroxisomal matrix9.31E-04
9GO:0031461: cullin-RING ubiquitin ligase complex1.33E-03
10GO:0016021: integral component of membrane2.20E-03
11GO:0016363: nuclear matrix3.36E-03
12GO:0031597: cytosolic proteasome complex3.36E-03
13GO:0030173: integral component of Golgi membrane3.36E-03
14GO:0000794: condensed nuclear chromosome3.97E-03
15GO:0031595: nuclear proteasome complex3.97E-03
16GO:0009524: phragmoplast4.03E-03
17GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.27E-03
18GO:0000148: 1,3-beta-D-glucan synthase complex5.27E-03
19GO:0000151: ubiquitin ligase complex5.32E-03
20GO:0031901: early endosome membrane5.98E-03
21GO:0005737: cytoplasm6.00E-03
22GO:0008540: proteasome regulatory particle, base subcomplex6.71E-03
23GO:0005819: spindle7.37E-03
24GO:0005618: cell wall7.70E-03
25GO:0031902: late endosome membrane8.02E-03
26GO:0090404: pollen tube tip8.27E-03
27GO:0043234: protein complex1.27E-02
28GO:0005769: early endosome1.27E-02
29GO:0005794: Golgi apparatus1.43E-02
30GO:0005774: vacuolar membrane1.48E-02
31GO:0005839: proteasome core complex1.56E-02
32GO:0016020: membrane1.80E-02
33GO:0005770: late endosome2.22E-02
34GO:0009504: cell plate2.46E-02
35GO:0005802: trans-Golgi network2.50E-02
36GO:0009506: plasmodesma2.70E-02
37GO:0071944: cell periphery2.83E-02
38GO:0005768: endosome3.02E-02
39GO:0048046: apoplast4.06E-02
40GO:0022626: cytosolic ribosome4.12E-02
Gene type



Gene DE type