co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G13000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
2	GO:1901485: positive regulation of transcription factor catabolic process	0.00E+00
3	GO:0006833: water transport	1.21E-05
4	GO:0034220: ion transmembrane transport	3.99E-05
5	GO:0045010: actin nucleation	7.49E-05
6	GO:0071370: cellular response to gibberellin stimulus	1.20E-04
7	GO:0010411: xyloglucan metabolic process	1.39E-04
8	GO:0006695: cholesterol biosynthetic process	2.77E-04
9	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	2.77E-04
10	GO:2000123: positive regulation of stomatal complex development	2.77E-04
11	GO:0010167: response to nitrate	3.30E-04
12	GO:0042546: cell wall biogenesis	3.31E-04
13	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	4.58E-04
14	GO:0015840: urea transport	4.58E-04
15	GO:0033591: response to L-ascorbic acid	4.58E-04
16	GO:0080170: hydrogen peroxide transmembrane transport	6.57E-04
17	GO:0051016: barbed-end actin filament capping	6.57E-04
18	GO:0009855: determination of bilateral symmetry	6.57E-04
19	GO:1902476: chloride transmembrane transport	6.57E-04
20	GO:0006810: transport	8.24E-04
21	GO:0006749: glutathione metabolic process	8.72E-04
22	GO:2000122: negative regulation of stomatal complex development	8.72E-04
23	GO:2000038: regulation of stomatal complex development	8.72E-04
24	GO:0006546: glycine catabolic process	8.72E-04
25	GO:0010037: response to carbon dioxide	8.72E-04
26	GO:0015976: carbon utilization	8.72E-04
27	GO:0071554: cell wall organization or biogenesis	9.78E-04
28	GO:0010583: response to cyclopentenone	1.04E-03
29	GO:0010375: stomatal complex patterning	1.10E-03
30	GO:0046785: microtubule polymerization	1.10E-03
31	GO:0016123: xanthophyll biosynthetic process	1.10E-03
32	GO:0010090: trichome morphogenesis	1.11E-03
33	GO:0010190: cytochrome b6f complex assembly	1.35E-03
34	GO:1900425: negative regulation of defense response to bacterium	1.35E-03
35	GO:0080060: integument development	1.61E-03
36	GO:0010014: meristem initiation	1.61E-03
37	GO:0042372: phylloquinone biosynthetic process	1.61E-03
38	GO:0009612: response to mechanical stimulus	1.61E-03
39	GO:0010555: response to mannitol	1.61E-03
40	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.61E-03
41	GO:2000067: regulation of root morphogenesis	1.61E-03
42	GO:0009955: adaxial/abaxial pattern specification	1.61E-03
43	GO:0071555: cell wall organization	1.63E-03
44	GO:0006821: chloride transport	1.89E-03
45	GO:0009645: response to low light intensity stimulus	1.89E-03
46	GO:0006402: mRNA catabolic process	2.19E-03
47	GO:0007186: G-protein coupled receptor signaling pathway	2.50E-03
48	GO:0009657: plastid organization	2.50E-03
49	GO:0009932: cell tip growth	2.50E-03
50	GO:0045337: farnesyl diphosphate biosynthetic process	2.82E-03
51	GO:0033384: geranyl diphosphate biosynthetic process	2.82E-03
52	GO:0016573: histone acetylation	3.16E-03
53	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.37E-03
54	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.51E-03
55	GO:0006535: cysteine biosynthetic process from serine	3.51E-03
56	GO:0043069: negative regulation of programmed cell death	3.51E-03
57	GO:0009773: photosynthetic electron transport in photosystem I	3.88E-03
58	GO:0006415: translational termination	3.88E-03
59	GO:0019684: photosynthesis, light reaction	3.88E-03
60	GO:0010072: primary shoot apical meristem specification	3.88E-03
61	GO:0009089: lysine biosynthetic process via diaminopimelate	3.88E-03
62	GO:1903507: negative regulation of nucleic acid-templated transcription	3.88E-03
63	GO:0009750: response to fructose	3.88E-03
64	GO:0015706: nitrate transport	4.26E-03
65	GO:0006790: sulfur compound metabolic process	4.26E-03
66	GO:2000028: regulation of photoperiodism, flowering	4.64E-03
67	GO:0030036: actin cytoskeleton organization	4.64E-03
68	GO:0009767: photosynthetic electron transport chain	4.64E-03
69	GO:0005985: sucrose metabolic process	5.46E-03
70	GO:0046854: phosphatidylinositol phosphorylation	5.46E-03
71	GO:0006636: unsaturated fatty acid biosynthetic process	5.88E-03
72	GO:0006338: chromatin remodeling	6.32E-03
73	GO:0009944: polarity specification of adaxial/abaxial axis	6.32E-03
74	GO:0019344: cysteine biosynthetic process	6.32E-03
75	GO:0061077: chaperone-mediated protein folding	7.22E-03
76	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.69E-03
77	GO:0006284: base-excision repair	8.66E-03
78	GO:0006633: fatty acid biosynthetic process	8.77E-03
79	GO:0016117: carotenoid biosynthetic process	9.17E-03
80	GO:0000271: polysaccharide biosynthetic process	9.68E-03
81	GO:0080022: primary root development	9.68E-03
82	GO:0045489: pectin biosynthetic process	1.02E-02
83	GO:0009749: response to glucose	1.13E-02
84	GO:0007267: cell-cell signaling	1.41E-02
85	GO:0055085: transmembrane transport	1.48E-02
86	GO:0016126: sterol biosynthetic process	1.54E-02
87	GO:0042128: nitrate assimilation	1.66E-02
88	GO:0080167: response to karrikin	1.86E-02
89	GO:0000160: phosphorelay signal transduction system	1.92E-02
90	GO:0009407: toxin catabolic process	1.99E-02
91	GO:0010119: regulation of stomatal movement	2.05E-02
92	GO:0007568: aging	2.05E-02
93	GO:0009867: jasmonic acid mediated signaling pathway	2.19E-02
94	GO:0016051: carbohydrate biosynthetic process	2.19E-02
95	GO:0006631: fatty acid metabolic process	2.48E-02
96	GO:0009744: response to sucrose	2.63E-02
97	GO:0009636: response to toxic substance	2.85E-02
98	GO:0031347: regulation of defense response	3.01E-02
99	GO:0009733: response to auxin	3.09E-02
100	GO:0009736: cytokinin-activated signaling pathway	3.25E-02
101	GO:0051603: proteolysis involved in cellular protein catabolic process	3.33E-02
102	GO:0009626: plant-type hypersensitive response	3.83E-02
103	GO:0009734: auxin-activated signaling pathway	3.86E-02
104	GO:0009740: gibberellic acid mediated signaling pathway	4.00E-02
105	GO:0006396: RNA processing	4.26E-02
106	GO:0051726: regulation of cell cycle	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
2	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
5	GO:0016762: xyloglucan:xyloglucosyl transferase activity	6.26E-05
6	GO:0015250: water channel activity	1.09E-04
7	GO:0080132: fatty acid alpha-hydroxylase activity	1.20E-04
8	GO:0009671: nitrate:proton symporter activity	1.20E-04
9	GO:0003838: sterol 24-C-methyltransferase activity	1.20E-04
10	GO:0008252: nucleotidase activity	1.20E-04
11	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.39E-04
12	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.77E-04
13	GO:0050017: L-3-cyanoalanine synthase activity	2.77E-04
14	GO:0010291: carotene beta-ring hydroxylase activity	2.77E-04
15	GO:0042389: omega-3 fatty acid desaturase activity	2.77E-04
16	GO:0004047: aminomethyltransferase activity	2.77E-04
17	GO:0031683: G-protein beta/gamma-subunit complex binding	4.58E-04
18	GO:0001664: G-protein coupled receptor binding	4.58E-04
19	GO:0016149: translation release factor activity, codon specific	6.57E-04
20	GO:0005253: anion channel activity	8.72E-04
21	GO:0015204: urea transmembrane transporter activity	8.72E-04
22	GO:0019901: protein kinase binding	9.17E-04
23	GO:0008725: DNA-3-methyladenine glycosylase activity	1.10E-03
24	GO:0016413: O-acetyltransferase activity	1.32E-03
25	GO:0016208: AMP binding	1.35E-03
26	GO:0005247: voltage-gated chloride channel activity	1.35E-03
27	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.61E-03
28	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.61E-03
29	GO:0004124: cysteine synthase activity	1.61E-03
30	GO:0004564: beta-fructofuranosidase activity	2.19E-03
31	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.50E-03
32	GO:0004337: geranyltranstransferase activity	2.82E-03
33	GO:0003747: translation release factor activity	2.82E-03
34	GO:0004575: sucrose alpha-glucosidase activity	3.16E-03
35	GO:0015112: nitrate transmembrane transporter activity	3.16E-03
36	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.54E-03
37	GO:0004161: dimethylallyltranstransferase activity	3.88E-03
38	GO:0004089: carbonate dehydratase activity	4.64E-03
39	GO:0005528: FK506 binding	6.32E-03
40	GO:0003714: transcription corepressor activity	6.32E-03
41	GO:0008134: transcription factor binding	6.32E-03
42	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	7.69E-03
43	GO:0042802: identical protein binding	1.23E-02
44	GO:0000156: phosphorelay response regulator activity	1.30E-02
45	GO:0051015: actin filament binding	1.30E-02
46	GO:0016759: cellulose synthase activity	1.36E-02
47	GO:0008483: transaminase activity	1.41E-02
48	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.41E-02
49	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.99E-02
50	GO:0003993: acid phosphatase activity	2.26E-02
51	GO:0051539: 4 iron, 4 sulfur cluster binding	2.41E-02
52	GO:0004364: glutathione transferase activity	2.55E-02
53	GO:0004674: protein serine/threonine kinase activity	2.59E-02
54	GO:0004185: serine-type carboxypeptidase activity	2.63E-02
55	GO:0005515: protein binding	2.92E-02
56	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.93E-02
57	GO:0004650: polygalacturonase activity	3.91E-02
58	GO:0003779: actin binding	4.09E-02
59	GO:0016758: transferase activity, transferring hexosyl groups	4.80E-02
60	GO:0019843: rRNA binding	4.89E-02
61	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	1.20E-04
2	GO:0042170: plastid membrane	2.77E-04
3	GO:0048046: apoplast	4.37E-04
4	GO:0009505: plant-type cell wall	6.01E-04
5	GO:0005775: vacuolar lumen	6.57E-04
6	GO:0005576: extracellular region	7.06E-04
7	GO:0009543: chloroplast thylakoid lumen	9.52E-04
8	GO:0031209: SCAR complex	1.35E-03
9	GO:0034707: chloride channel complex	1.35E-03
10	GO:0000123: histone acetyltransferase complex	1.89E-03
11	GO:0042807: central vacuole	1.89E-03
12	GO:0009535: chloroplast thylakoid membrane	1.89E-03
13	GO:0000326: protein storage vacuole	2.50E-03
14	GO:0009941: chloroplast envelope	2.61E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.82E-03
16	GO:0009534: chloroplast thylakoid	3.09E-03
17	GO:0055028: cortical microtubule	3.51E-03
18	GO:0030095: chloroplast photosystem II	5.04E-03
19	GO:0005618: cell wall	5.80E-03
20	GO:0009654: photosystem II oxygen evolving complex	6.76E-03
21	GO:0005887: integral component of plasma membrane	7.80E-03
22	GO:0009507: chloroplast	8.36E-03
23	GO:0009705: plant-type vacuole membrane	9.64E-03
24	GO:0019898: extrinsic component of membrane	1.13E-02
25	GO:0005778: peroxisomal membrane	1.41E-02
26	GO:0030529: intracellular ribonucleoprotein complex	1.54E-02
27	GO:0009570: chloroplast stroma	1.54E-02
28	GO:0031969: chloroplast membrane	1.86E-02
29	GO:0031225: anchored component of membrane	1.93E-02
30	GO:0000325: plant-type vacuole	2.05E-02
31	GO:0031902: late endosome membrane	2.48E-02
32	GO:0031977: thylakoid lumen	2.48E-02
33	GO:0005856: cytoskeleton	2.85E-02
34	GO:0005773: vacuole	2.94E-02
35	GO:0005834: heterotrimeric G-protein complex	3.83E-02
36	GO:0000139: Golgi membrane	3.89E-02
37	GO:0009706: chloroplast inner membrane	4.17E-02