GO Enrichment Analysis of Co-expressed Genes with
AT3G12930
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0006412: translation | 4.14E-07 |
| 4 | GO:0010027: thylakoid membrane organization | 1.97E-06 |
| 5 | GO:0015979: photosynthesis | 3.12E-06 |
| 6 | GO:0009306: protein secretion | 1.80E-05 |
| 7 | GO:0009735: response to cytokinin | 2.53E-05 |
| 8 | GO:0010196: nonphotochemical quenching | 3.89E-05 |
| 9 | GO:0006353: DNA-templated transcription, termination | 5.09E-05 |
| 10 | GO:0032544: plastid translation | 6.46E-05 |
| 11 | GO:0010206: photosystem II repair | 8.01E-05 |
| 12 | GO:1904966: positive regulation of vitamin E biosynthetic process | 9.33E-05 |
| 13 | GO:1904964: positive regulation of phytol biosynthetic process | 9.33E-05 |
| 14 | GO:0042371: vitamin K biosynthetic process | 9.33E-05 |
| 15 | GO:1902458: positive regulation of stomatal opening | 9.33E-05 |
| 16 | GO:0009773: photosynthetic electron transport in photosystem I | 1.37E-04 |
| 17 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.59E-04 |
| 18 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.20E-04 |
| 19 | GO:0034755: iron ion transmembrane transport | 2.20E-04 |
| 20 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.20E-04 |
| 21 | GO:0010024: phytochromobilin biosynthetic process | 2.20E-04 |
| 22 | GO:0009658: chloroplast organization | 2.26E-04 |
| 23 | GO:0042254: ribosome biogenesis | 2.33E-04 |
| 24 | GO:0006788: heme oxidation | 3.67E-04 |
| 25 | GO:0006954: inflammatory response | 3.67E-04 |
| 26 | GO:0090391: granum assembly | 3.67E-04 |
| 27 | GO:0010239: chloroplast mRNA processing | 5.28E-04 |
| 28 | GO:0010236: plastoquinone biosynthetic process | 8.88E-04 |
| 29 | GO:0045038: protein import into chloroplast thylakoid membrane | 8.88E-04 |
| 30 | GO:0006655: phosphatidylglycerol biosynthetic process | 1.08E-03 |
| 31 | GO:0006751: glutathione catabolic process | 1.08E-03 |
| 32 | GO:0009627: systemic acquired resistance | 1.12E-03 |
| 33 | GO:0015995: chlorophyll biosynthetic process | 1.18E-03 |
| 34 | GO:1901259: chloroplast rRNA processing | 1.29E-03 |
| 35 | GO:0042372: phylloquinone biosynthetic process | 1.29E-03 |
| 36 | GO:1900057: positive regulation of leaf senescence | 1.51E-03 |
| 37 | GO:0009772: photosynthetic electron transport in photosystem II | 1.51E-03 |
| 38 | GO:0042255: ribosome assembly | 1.75E-03 |
| 39 | GO:0006605: protein targeting | 1.75E-03 |
| 40 | GO:2000070: regulation of response to water deprivation | 1.75E-03 |
| 41 | GO:0030001: metal ion transport | 1.86E-03 |
| 42 | GO:0009245: lipid A biosynthetic process | 2.25E-03 |
| 43 | GO:0010205: photoinhibition | 2.52E-03 |
| 44 | GO:0006879: cellular iron ion homeostasis | 3.09E-03 |
| 45 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.09E-03 |
| 46 | GO:0010628: positive regulation of gene expression | 3.69E-03 |
| 47 | GO:0006006: glucose metabolic process | 3.69E-03 |
| 48 | GO:0010143: cutin biosynthetic process | 4.01E-03 |
| 49 | GO:0019253: reductive pentose-phosphate cycle | 4.01E-03 |
| 50 | GO:0010207: photosystem II assembly | 4.01E-03 |
| 51 | GO:0006636: unsaturated fatty acid biosynthetic process | 4.67E-03 |
| 52 | GO:0000027: ribosomal large subunit assembly | 5.01E-03 |
| 53 | GO:0051017: actin filament bundle assembly | 5.01E-03 |
| 54 | GO:0009790: embryo development | 5.82E-03 |
| 55 | GO:0006633: fatty acid biosynthetic process | 6.26E-03 |
| 56 | GO:0042335: cuticle development | 7.65E-03 |
| 57 | GO:0008033: tRNA processing | 7.65E-03 |
| 58 | GO:0016032: viral process | 9.78E-03 |
| 59 | GO:0032502: developmental process | 9.78E-03 |
| 60 | GO:0030163: protein catabolic process | 1.02E-02 |
| 61 | GO:0009817: defense response to fungus, incompatible interaction | 1.46E-02 |
| 62 | GO:0018298: protein-chromophore linkage | 1.46E-02 |
| 63 | GO:0032259: methylation | 1.87E-02 |
| 64 | GO:0016042: lipid catabolic process | 1.90E-02 |
| 65 | GO:0051707: response to other organism | 2.07E-02 |
| 66 | GO:0006364: rRNA processing | 2.55E-02 |
| 67 | GO:0006096: glycolytic process | 2.88E-02 |
| 68 | GO:0009058: biosynthetic process | 4.00E-02 |
| 69 | GO:0045490: pectin catabolic process | 4.84E-02 |
| 70 | GO:0009451: RNA modification | 4.92E-02 |
| 71 | GO:0009793: embryo development ending in seed dormancy | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0047661: amino-acid racemase activity | 0.00E+00 |
| 3 | GO:0019843: rRNA binding | 2.85E-09 |
| 4 | GO:0005528: FK506 binding | 1.03E-07 |
| 5 | GO:0003735: structural constituent of ribosome | 3.44E-07 |
| 6 | GO:0016851: magnesium chelatase activity | 4.19E-06 |
| 7 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.41E-05 |
| 8 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 9.33E-05 |
| 9 | GO:0045485: omega-6 fatty acid desaturase activity | 9.33E-05 |
| 10 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.20E-04 |
| 11 | GO:0003839: gamma-glutamylcyclotransferase activity | 2.20E-04 |
| 12 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 2.20E-04 |
| 13 | GO:0090729: toxin activity | 3.67E-04 |
| 14 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 3.67E-04 |
| 15 | GO:0043023: ribosomal large subunit binding | 5.28E-04 |
| 16 | GO:0043495: protein anchor | 7.02E-04 |
| 17 | GO:0004392: heme oxygenase (decyclizing) activity | 7.02E-04 |
| 18 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 7.02E-04 |
| 19 | GO:0004659: prenyltransferase activity | 7.02E-04 |
| 20 | GO:0004040: amidase activity | 8.88E-04 |
| 21 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.08E-03 |
| 22 | GO:0031177: phosphopantetheine binding | 1.08E-03 |
| 23 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.08E-03 |
| 24 | GO:0000035: acyl binding | 1.29E-03 |
| 25 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.30E-03 |
| 26 | GO:0019899: enzyme binding | 1.51E-03 |
| 27 | GO:0016788: hydrolase activity, acting on ester bonds | 1.64E-03 |
| 28 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.75E-03 |
| 29 | GO:0005381: iron ion transmembrane transporter activity | 2.52E-03 |
| 30 | GO:0031072: heat shock protein binding | 3.69E-03 |
| 31 | GO:0016746: transferase activity, transferring acyl groups | 4.11E-03 |
| 32 | GO:0030570: pectate lyase activity | 6.47E-03 |
| 33 | GO:0022891: substrate-specific transmembrane transporter activity | 6.47E-03 |
| 34 | GO:0003756: protein disulfide isomerase activity | 6.85E-03 |
| 35 | GO:0003727: single-stranded RNA binding | 6.85E-03 |
| 36 | GO:0008080: N-acetyltransferase activity | 8.06E-03 |
| 37 | GO:0042802: identical protein binding | 8.74E-03 |
| 38 | GO:0051015: actin filament binding | 1.02E-02 |
| 39 | GO:0008168: methyltransferase activity | 1.03E-02 |
| 40 | GO:0016791: phosphatase activity | 1.07E-02 |
| 41 | GO:0016168: chlorophyll binding | 1.26E-02 |
| 42 | GO:0008236: serine-type peptidase activity | 1.41E-02 |
| 43 | GO:0052689: carboxylic ester hydrolase activity | 1.46E-02 |
| 44 | GO:0050661: NADP binding | 1.89E-02 |
| 45 | GO:0043621: protein self-association | 2.18E-02 |
| 46 | GO:0051287: NAD binding | 2.37E-02 |
| 47 | GO:0016491: oxidoreductase activity | 2.47E-02 |
| 48 | GO:0003690: double-stranded DNA binding | 2.62E-02 |
| 49 | GO:0016887: ATPase activity | 3.03E-02 |
| 50 | GO:0051082: unfolded protein binding | 3.28E-02 |
| 51 | GO:0016829: lyase activity | 4.07E-02 |
| 52 | GO:0004252: serine-type endopeptidase activity | 4.15E-02 |
| 53 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 5.00E-28 |
| 2 | GO:0009570: chloroplast stroma | 2.85E-22 |
| 3 | GO:0009941: chloroplast envelope | 2.10E-17 |
| 4 | GO:0009579: thylakoid | 8.03E-14 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.29E-12 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 6.67E-11 |
| 7 | GO:0031977: thylakoid lumen | 7.85E-11 |
| 8 | GO:0005840: ribosome | 2.48E-07 |
| 9 | GO:0009534: chloroplast thylakoid | 3.64E-07 |
| 10 | GO:0010007: magnesium chelatase complex | 1.76E-06 |
| 11 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 9.33E-05 |
| 12 | GO:0009515: granal stacked thylakoid | 9.33E-05 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 3.24E-04 |
| 14 | GO:0042651: thylakoid membrane | 3.24E-04 |
| 15 | GO:0033281: TAT protein transport complex | 3.67E-04 |
| 16 | GO:0019898: extrinsic component of membrane | 6.66E-04 |
| 17 | GO:0009533: chloroplast stromal thylakoid | 1.51E-03 |
| 18 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.25E-03 |
| 19 | GO:0008180: COP9 signalosome | 2.25E-03 |
| 20 | GO:0030095: chloroplast photosystem II | 4.01E-03 |
| 21 | GO:0015935: small ribosomal subunit | 5.72E-03 |
| 22 | GO:0015629: actin cytoskeleton | 6.47E-03 |
| 23 | GO:0009523: photosystem II | 8.90E-03 |
| 24 | GO:0009295: nucleoid | 1.11E-02 |
| 25 | GO:0031969: chloroplast membrane | 1.32E-02 |
| 26 | GO:0019005: SCF ubiquitin ligase complex | 1.46E-02 |
| 27 | GO:0016020: membrane | 2.19E-02 |
| 28 | GO:0005856: cytoskeleton | 2.24E-02 |
| 29 | GO:0009536: plastid | 2.26E-02 |
| 30 | GO:0009505: plant-type cell wall | 2.32E-02 |
| 31 | GO:0000502: proteasome complex | 2.55E-02 |
| 32 | GO:0005618: cell wall | 3.20E-02 |
| 33 | GO:0009706: chloroplast inner membrane | 3.28E-02 |