co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12685

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:1905499: trichome papilla formation	0.00E+00
6	GO:0006399: tRNA metabolic process	0.00E+00
7	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
8	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
9	GO:0015995: chlorophyll biosynthetic process	3.53E-10
10	GO:0009658: chloroplast organization	7.04E-08
11	GO:0015979: photosynthesis	2.78E-07
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.62E-06
13	GO:0032544: plastid translation	3.43E-06
14	GO:0006000: fructose metabolic process	5.99E-06
15	GO:0006782: protoporphyrinogen IX biosynthetic process	8.71E-06
16	GO:0010027: thylakoid membrane organization	1.45E-05
17	GO:0006418: tRNA aminoacylation for protein translation	4.45E-05
18	GO:0006002: fructose 6-phosphate metabolic process	1.81E-04
19	GO:0071482: cellular response to light stimulus	1.81E-04
20	GO:1904966: positive regulation of vitamin E biosynthetic process	1.84E-04
21	GO:1904964: positive regulation of phytol biosynthetic process	1.84E-04
22	GO:0071588: hydrogen peroxide mediated signaling pathway	1.84E-04
23	GO:0009735: response to cytokinin	2.54E-04
24	GO:0006779: porphyrin-containing compound biosynthetic process	2.64E-04
25	GO:1900865: chloroplast RNA modification	2.64E-04
26	GO:0009773: photosynthetic electron transport in photosystem I	3.60E-04
27	GO:0043085: positive regulation of catalytic activity	3.60E-04
28	GO:0006352: DNA-templated transcription, initiation	3.60E-04
29	GO:0043039: tRNA aminoacylation	4.15E-04
30	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.15E-04
31	GO:0006568: tryptophan metabolic process	4.15E-04
32	GO:0010270: photosystem II oxygen evolving complex assembly	4.15E-04
33	GO:0005986: sucrose biosynthetic process	4.70E-04
34	GO:0006094: gluconeogenesis	4.70E-04
35	GO:0006457: protein folding	5.26E-04
36	GO:0019253: reductive pentose-phosphate cycle	5.30E-04
37	GO:0006412: translation	5.59E-04
38	GO:0009793: embryo development ending in seed dormancy	6.50E-04
39	GO:0010581: regulation of starch biosynthetic process	6.76E-04
40	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	6.76E-04
41	GO:0090391: granum assembly	6.76E-04
42	GO:0051604: protein maturation	6.76E-04
43	GO:0071492: cellular response to UV-A	6.76E-04
44	GO:0051085: chaperone mediated protein folding requiring cofactor	9.65E-04
45	GO:0033014: tetrapyrrole biosynthetic process	9.65E-04
46	GO:0010088: phloem development	9.65E-04
47	GO:0016556: mRNA modification	9.65E-04
48	GO:0006986: response to unfolded protein	9.65E-04
49	GO:2001141: regulation of RNA biosynthetic process	9.65E-04
50	GO:0042254: ribosome biogenesis	1.00E-03
51	GO:0015994: chlorophyll metabolic process	1.28E-03
52	GO:0071483: cellular response to blue light	1.28E-03
53	GO:0010021: amylopectin biosynthetic process	1.28E-03
54	GO:0071486: cellular response to high light intensity	1.28E-03
55	GO:0032543: mitochondrial translation	1.63E-03
56	GO:0006564: L-serine biosynthetic process	1.63E-03
57	GO:0045038: protein import into chloroplast thylakoid membrane	1.63E-03
58	GO:0031365: N-terminal protein amino acid modification	1.63E-03
59	GO:0007094: mitotic spindle assembly checkpoint	1.63E-03
60	GO:0006665: sphingolipid metabolic process	1.63E-03
61	GO:0045454: cell redox homeostasis	1.76E-03
62	GO:0000470: maturation of LSU-rRNA	2.01E-03
63	GO:0016554: cytidine to uridine editing	2.01E-03
64	GO:0006828: manganese ion transport	2.01E-03
65	GO:0006655: phosphatidylglycerol biosynthetic process	2.01E-03
66	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.01E-03
67	GO:0042744: hydrogen peroxide catabolic process	2.37E-03
68	GO:0042026: protein refolding	2.41E-03
69	GO:0006458: 'de novo' protein folding	2.41E-03
70	GO:0010019: chloroplast-nucleus signaling pathway	2.41E-03
71	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.83E-03
72	GO:0010196: nonphotochemical quenching	2.83E-03
73	GO:0006826: iron ion transport	2.83E-03
74	GO:0006400: tRNA modification	2.83E-03
75	GO:0018298: protein-chromophore linkage	3.25E-03
76	GO:0048564: photosystem I assembly	3.28E-03
77	GO:0045292: mRNA cis splicing, via spliceosome	3.28E-03
78	GO:0042255: ribosome assembly	3.28E-03
79	GO:0006353: DNA-templated transcription, termination	3.28E-03
80	GO:0009657: plastid organization	3.75E-03
81	GO:0019430: removal of superoxide radicals	3.75E-03
82	GO:0009637: response to blue light	4.12E-03
83	GO:0000373: Group II intron splicing	4.25E-03
84	GO:0034599: cellular response to oxidative stress	4.30E-03
85	GO:0010380: regulation of chlorophyll biosynthetic process	4.76E-03
86	GO:0042761: very long-chain fatty acid biosynthetic process	4.76E-03
87	GO:0010114: response to red light	5.30E-03
88	GO:0006816: calcium ion transport	5.85E-03
89	GO:0006415: translational termination	5.85E-03
90	GO:0009073: aromatic amino acid family biosynthetic process	5.85E-03
91	GO:0009750: response to fructose	5.85E-03
92	GO:0018119: peptidyl-cysteine S-nitrosylation	5.85E-03
93	GO:0005983: starch catabolic process	6.43E-03
94	GO:0016024: CDP-diacylglycerol biosynthetic process	6.43E-03
95	GO:0010020: chloroplast fission	7.64E-03
96	GO:0005985: sucrose metabolic process	8.27E-03
97	GO:0010039: response to iron ion	8.27E-03
98	GO:0090351: seedling development	8.27E-03
99	GO:0010025: wax biosynthetic process	8.93E-03
100	GO:0009768: photosynthesis, light harvesting in photosystem I	1.03E-02
101	GO:0061077: chaperone-mediated protein folding	1.10E-02
102	GO:0051321: meiotic cell cycle	1.10E-02
103	GO:0006629: lipid metabolic process	1.14E-02
104	GO:0010091: trichome branching	1.32E-02
105	GO:0016117: carotenoid biosynthetic process	1.40E-02
106	GO:0042335: cuticle development	1.48E-02
107	GO:0009790: embryo development	1.49E-02
108	GO:0006662: glycerol ether metabolic process	1.56E-02
109	GO:0006413: translational initiation	1.64E-02
110	GO:0048544: recognition of pollen	1.64E-02
111	GO:0006814: sodium ion transport	1.64E-02
112	GO:0007059: chromosome segregation	1.64E-02
113	GO:0019252: starch biosynthetic process	1.73E-02
114	GO:0008654: phospholipid biosynthetic process	1.73E-02
115	GO:0080156: mitochondrial mRNA modification	1.81E-02
116	GO:0000302: response to reactive oxygen species	1.81E-02
117	GO:0009451: RNA modification	1.81E-02
118	GO:0032502: developmental process	1.90E-02
119	GO:0016311: dephosphorylation	2.74E-02
120	GO:0009817: defense response to fungus, incompatible interaction	2.84E-02
121	GO:0048481: plant ovule development	2.84E-02
122	GO:0010218: response to far red light	3.05E-02
123	GO:0055114: oxidation-reduction process	3.11E-02
124	GO:0009631: cold acclimation	3.15E-02
125	GO:0006508: proteolysis	3.25E-02
126	GO:0006839: mitochondrial transport	3.69E-02
127	GO:0030001: metal ion transport	3.69E-02
128	GO:0009644: response to high light intensity	4.26E-02
129	GO:0032259: methylation	4.77E-02
130	GO:0006364: rRNA processing	4.98E-02
131	GO:0006813: potassium ion transport	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
7	GO:0004823: leucine-tRNA ligase activity	0.00E+00
8	GO:0046408: chlorophyll synthetase activity	0.00E+00
9	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
10	GO:0005048: signal sequence binding	0.00E+00
11	GO:0019843: rRNA binding	3.22E-09
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.62E-06
13	GO:0002161: aminoacyl-tRNA editing activity	5.99E-06
14	GO:0016987: sigma factor activity	2.56E-05
15	GO:0001053: plastid sigma factor activity	2.56E-05
16	GO:0051087: chaperone binding	4.45E-05
17	GO:0051920: peroxiredoxin activity	8.53E-05
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.70E-05
19	GO:0004812: aminoacyl-tRNA ligase activity	8.79E-05
20	GO:0016209: antioxidant activity	1.45E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.84E-04
22	GO:0004831: tyrosine-tRNA ligase activity	1.84E-04
23	GO:0003867: 4-aminobutyrate transaminase activity	1.84E-04
24	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.84E-04
25	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.84E-04
26	GO:0051082: unfolded protein binding	2.09E-04
27	GO:0003723: RNA binding	2.18E-04
28	GO:0016168: chlorophyll binding	2.72E-04
29	GO:0008047: enzyme activator activity	3.10E-04
30	GO:0033201: alpha-1,4-glucan synthase activity	4.15E-04
31	GO:0004109: coproporphyrinogen oxidase activity	4.15E-04
32	GO:0000774: adenyl-nucleotide exchange factor activity	4.15E-04
33	GO:0016630: protochlorophyllide reductase activity	4.15E-04
34	GO:0047746: chlorophyllase activity	4.15E-04
35	GO:0004618: phosphoglycerate kinase activity	4.15E-04
36	GO:0004617: phosphoglycerate dehydrogenase activity	4.15E-04
37	GO:0003735: structural constituent of ribosome	4.48E-04
38	GO:0004519: endonuclease activity	5.83E-04
39	GO:0004373: glycogen (starch) synthase activity	6.76E-04
40	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	6.76E-04
41	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	6.76E-04
42	GO:0005528: FK506 binding	7.29E-04
43	GO:0016851: magnesium chelatase activity	9.65E-04
44	GO:0016149: translation release factor activity, codon specific	9.65E-04
45	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	9.65E-04
46	GO:0043023: ribosomal large subunit binding	9.65E-04
47	GO:0008097: 5S rRNA binding	9.65E-04
48	GO:0008508: bile acid:sodium symporter activity	9.65E-04
49	GO:0022891: substrate-specific transmembrane transporter activity	1.04E-03
50	GO:0043495: protein anchor	1.28E-03
51	GO:0009011: starch synthase activity	1.28E-03
52	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.28E-03
53	GO:0005319: lipid transporter activity	1.28E-03
54	GO:0004791: thioredoxin-disulfide reductase activity	1.52E-03
55	GO:0008374: O-acyltransferase activity	1.63E-03
56	GO:0009922: fatty acid elongase activity	1.63E-03
57	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.63E-03
58	GO:0003959: NADPH dehydrogenase activity	1.63E-03
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.98E-03
60	GO:0004130: cytochrome-c peroxidase activity	2.01E-03
61	GO:0016688: L-ascorbate peroxidase activity	2.01E-03
62	GO:0004605: phosphatidate cytidylyltransferase activity	2.01E-03
63	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.41E-03
64	GO:0005507: copper ion binding	2.55E-03
65	GO:0016831: carboxy-lyase activity	2.83E-03
66	GO:0008235: metalloexopeptidase activity	2.83E-03
67	GO:0019899: enzyme binding	2.83E-03
68	GO:0008236: serine-type peptidase activity	3.09E-03
69	GO:0008312: 7S RNA binding	3.28E-03
70	GO:0004033: aldo-keto reductase (NADP) activity	3.28E-03
71	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.25E-03
72	GO:0003747: translation release factor activity	4.25E-03
73	GO:0005384: manganese ion transmembrane transporter activity	4.76E-03
74	GO:0047617: acyl-CoA hydrolase activity	4.76E-03
75	GO:0004601: peroxidase activity	5.27E-03
76	GO:0004177: aminopeptidase activity	5.85E-03
77	GO:0044183: protein binding involved in protein folding	5.85E-03
78	GO:0000049: tRNA binding	6.43E-03
79	GO:0008081: phosphoric diester hydrolase activity	7.03E-03
80	GO:0015095: magnesium ion transmembrane transporter activity	7.03E-03
81	GO:0031072: heat shock protein binding	7.03E-03
82	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.14E-03
83	GO:0008266: poly(U) RNA binding	7.64E-03
84	GO:0031409: pigment binding	8.93E-03
85	GO:0042803: protein homodimerization activity	9.24E-03
86	GO:0008324: cation transmembrane transporter activity	1.03E-02
87	GO:0003924: GTPase activity	1.14E-02
88	GO:0009055: electron carrier activity	1.24E-02
89	GO:0003727: single-stranded RNA binding	1.32E-02
90	GO:0047134: protein-disulfide reductase activity	1.40E-02
91	GO:0008080: N-acetyltransferase activity	1.56E-02
92	GO:0003743: translation initiation factor activity	2.06E-02
93	GO:0008483: transaminase activity	2.17E-02
94	GO:0008237: metallopeptidase activity	2.17E-02
95	GO:0016597: amino acid binding	2.26E-02
96	GO:0046872: metal ion binding	2.55E-02
97	GO:0008168: methyltransferase activity	2.63E-02
98	GO:0000287: magnesium ion binding	2.68E-02
99	GO:0016788: hydrolase activity, acting on ester bonds	2.79E-02
100	GO:0003729: mRNA binding	3.04E-02
101	GO:0004222: metalloendopeptidase activity	3.05E-02
102	GO:0003746: translation elongation factor activity	3.36E-02
103	GO:0051539: 4 iron, 4 sulfur cluster binding	3.69E-02
104	GO:0043621: protein self-association	4.26E-02
105	GO:0051537: 2 iron, 2 sulfur cluster binding	4.26E-02
106	GO:0005525: GTP binding	4.35E-02
107	GO:0051287: NAD binding	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.01E-58
2	GO:0009570: chloroplast stroma	2.70E-36
3	GO:0009941: chloroplast envelope	9.54E-26
4	GO:0009535: chloroplast thylakoid membrane	3.02E-16
5	GO:0009579: thylakoid	1.08E-07
6	GO:0009534: chloroplast thylakoid	1.13E-07
7	GO:0005840: ribosome	1.21E-05
8	GO:0009706: chloroplast inner membrane	1.79E-05
9	GO:0009543: chloroplast thylakoid lumen	3.04E-05
10	GO:0009536: plastid	1.22E-04
11	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.84E-04
12	GO:0009515: granal stacked thylakoid	1.84E-04
13	GO:0009923: fatty acid elongase complex	1.84E-04
14	GO:0009547: plastid ribosome	1.84E-04
15	GO:0010319: stromule	2.15E-04
16	GO:0031969: chloroplast membrane	2.44E-04
17	GO:0080085: signal recognition particle, chloroplast targeting	4.15E-04
18	GO:0010007: magnesium chelatase complex	6.76E-04
19	GO:0009526: plastid envelope	1.28E-03
20	GO:0005828: kinetochore microtubule	1.28E-03
21	GO:0000776: kinetochore	1.63E-03
22	GO:0009523: photosystem II	1.63E-03
23	GO:0055035: plastid thylakoid membrane	1.63E-03
24	GO:0000777: condensed chromosome kinetochore	2.41E-03
25	GO:0005759: mitochondrial matrix	2.69E-03
26	GO:0043231: intracellular membrane-bounded organelle	2.82E-03
27	GO:0009533: chloroplast stromal thylakoid	2.83E-03
28	GO:0009501: amyloplast	3.28E-03
29	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.75E-03
30	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.25E-03
31	GO:0005876: spindle microtubule	4.76E-03
32	GO:0031977: thylakoid lumen	4.88E-03
33	GO:0000311: plastid large ribosomal subunit	6.43E-03
34	GO:0009508: plastid chromosome	7.03E-03
35	GO:0000312: plastid small ribosomal subunit	7.64E-03
36	GO:0030076: light-harvesting complex	8.27E-03
37	GO:0042651: thylakoid membrane	1.03E-02
38	GO:0015935: small ribosomal subunit	1.10E-02
39	GO:0010287: plastoglobule	1.21E-02
40	GO:0048046: apoplast	1.60E-02
41	GO:0009522: photosystem I	1.64E-02
42	GO:0009295: nucleoid	2.17E-02
43	GO:0046658: anchored component of plasma membrane	2.34E-02
44	GO:0009707: chloroplast outer membrane	2.84E-02
45	GO:0022625: cytosolic large ribosomal subunit	3.56E-02