co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	4.83E-06
2	GO:0010353: response to trehalose	1.33E-05
3	GO:0042780: tRNA 3'-end processing	2.46E-05
4	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	2.46E-05
5	GO:0051639: actin filament network formation	3.83E-05
6	GO:0000381: regulation of alternative mRNA splicing, via spliceosome	5.40E-05
7	GO:0051764: actin crosslink formation	5.40E-05
8	GO:0006364: rRNA processing	6.78E-05
9	GO:0009094: L-phenylalanine biosynthetic process	1.11E-04
10	GO:0009610: response to symbiotic fungus	1.32E-04
11	GO:0001510: RNA methylation	1.78E-04
12	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	2.02E-04
13	GO:0005983: starch catabolic process	3.06E-04
14	GO:0010628: positive regulation of gene expression	3.33E-04
15	GO:0030036: actin cytoskeleton organization	3.33E-04
16	GO:0051017: actin filament bundle assembly	4.48E-04
17	GO:0009561: megagametogenesis	6.03E-04
18	GO:0010501: RNA secondary structure unwinding	6.67E-04
19	GO:0009791: post-embryonic development	7.68E-04
20	GO:0009631: cold acclimation	1.32E-03
21	GO:0009846: pollen germination	1.93E-03
22	GO:0016569: covalent chromatin modification	2.46E-03
23	GO:0009553: embryo sac development	2.51E-03
24	GO:0008380: RNA splicing	4.18E-03
25	GO:0009860: pollen tube growth	5.25E-03
26	GO:0032259: methylation	7.35E-03
27	GO:0006397: mRNA processing	7.80E-03
28	GO:0006511: ubiquitin-dependent protein catabolic process	1.41E-02
29	GO:0016310: phosphorylation	3.55E-02
30	GO:0016567: protein ubiquitination	4.14E-02
31	GO:0006508: proteolysis	4.17E-02

Rank	GO Term	Adjusted P value
1	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
2	GO:0016274: protein-arginine N-methyltransferase activity	4.83E-06
3	GO:0050521: alpha-glucan, water dikinase activity	4.83E-06
4	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	1.33E-05
5	GO:0004839: ubiquitin activating enzyme activity	1.33E-05
6	GO:0042781: 3'-tRNA processing endoribonuclease activity	2.46E-05
7	GO:0047769: arogenate dehydratase activity	5.40E-05
8	GO:0004664: prephenate dehydratase activity	5.40E-05
9	GO:0008641: small protein activating enzyme activity	7.14E-05
10	GO:0003724: RNA helicase activity	1.78E-04
11	GO:0008168: methyltransferase activity	2.75E-04
12	GO:0004527: exonuclease activity	7.00E-04
13	GO:0051015: actin filament binding	8.71E-04
14	GO:0003676: nucleic acid binding	9.09E-04
15	GO:0016597: amino acid binding	9.78E-04
16	GO:0004004: ATP-dependent RNA helicase activity	1.13E-03
17	GO:0008026: ATP-dependent helicase activity	2.66E-03
18	GO:0004386: helicase activity	2.71E-03
19	GO:0005524: ATP binding	1.02E-02
20	GO:0000166: nucleotide binding	1.13E-02
21	GO:0005515: protein binding	1.58E-02
22	GO:0003824: catalytic activity	2.00E-02
23	GO:0004842: ubiquitin-protein transferase activity	2.35E-02
24	GO:0003729: mRNA binding	2.48E-02
25	GO:0016757: transferase activity, transferring glycosyl groups	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0035145: exon-exon junction complex	1.33E-05
2	GO:0032432: actin filament bundle	3.83E-05
3	GO:0016604: nuclear body	2.27E-04
4	GO:0005884: actin filament	2.79E-04
5	GO:0090406: pollen tube	1.66E-03
6	GO:0005681: spliceosomal complex	2.26E-03
7	GO:0005654: nucleoplasm	2.93E-03
8	GO:0005730: nucleolus	2.94E-03
9	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	5.32E-03
10	GO:0005829: cytosol	5.97E-03
11	GO:0009570: chloroplast stroma	1.13E-02
12	GO:0005802: trans-Golgi network	1.58E-02
13	GO:0005622: intracellular	1.70E-02
14	GO:0005768: endosome	1.73E-02