co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12610

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0006066: alcohol metabolic process	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0016553: base conversion or substitution editing	0.00E+00
6	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
7	GO:0042371: vitamin K biosynthetic process	0.00E+00
8	GO:0006399: tRNA metabolic process	0.00E+00
9	GO:0002184: cytoplasmic translational termination	0.00E+00
10	GO:0032544: plastid translation	4.44E-11
11	GO:0015979: photosynthesis	2.38E-10
12	GO:0009773: photosynthetic electron transport in photosystem I	6.11E-10
13	GO:0006412: translation	9.13E-10
14	GO:0042254: ribosome biogenesis	9.63E-08
15	GO:0009735: response to cytokinin	1.99E-07
16	GO:0010196: nonphotochemical quenching	1.46E-05
17	GO:0046620: regulation of organ growth	2.17E-05
18	GO:0090391: granum assembly	3.09E-05
19	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.12E-05
20	GO:0042335: cuticle development	5.07E-05
21	GO:0006810: transport	6.16E-05
22	GO:0009828: plant-type cell wall loosening	1.25E-04
23	GO:0010027: thylakoid membrane organization	1.72E-04
24	GO:0006833: water transport	2.22E-04
25	GO:0015995: chlorophyll biosynthetic process	2.28E-04
26	GO:0006869: lipid transport	2.73E-04
27	GO:0042372: phylloquinone biosynthetic process	3.43E-04
28	GO:0009658: chloroplast organization	4.12E-04
29	GO:0009772: photosynthetic electron transport in photosystem II	4.42E-04
30	GO:0043489: RNA stabilization	4.51E-04
31	GO:1904966: positive regulation of vitamin E biosynthetic process	4.51E-04
32	GO:1904964: positive regulation of phytol biosynthetic process	4.51E-04
33	GO:0042759: long-chain fatty acid biosynthetic process	4.51E-04
34	GO:0071588: hydrogen peroxide mediated signaling pathway	4.51E-04
35	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.51E-04
36	GO:0060627: regulation of vesicle-mediated transport	4.51E-04
37	GO:0034220: ion transmembrane transport	5.82E-04
38	GO:0009664: plant-type cell wall organization	8.39E-04
39	GO:0043255: regulation of carbohydrate biosynthetic process	9.73E-04
40	GO:0010115: regulation of abscisic acid biosynthetic process	9.73E-04
41	GO:1902326: positive regulation of chlorophyll biosynthetic process	9.73E-04
42	GO:0001736: establishment of planar polarity	9.73E-04
43	GO:0010024: phytochromobilin biosynthetic process	9.73E-04
44	GO:0006949: syncytium formation	1.10E-03
45	GO:0009416: response to light stimulus	1.30E-03
46	GO:0016042: lipid catabolic process	1.31E-03
47	GO:0015714: phosphoenolpyruvate transport	1.58E-03
48	GO:0006518: peptide metabolic process	1.58E-03
49	GO:0006788: heme oxidation	1.58E-03
50	GO:0015840: urea transport	1.58E-03
51	GO:0006696: ergosterol biosynthetic process	1.58E-03
52	GO:0009826: unidimensional cell growth	1.63E-03
53	GO:0006006: glucose metabolic process	1.65E-03
54	GO:0009725: response to hormone	1.65E-03
55	GO:0010143: cutin biosynthetic process	1.86E-03
56	GO:0080170: hydrogen peroxide transmembrane transport	2.29E-03
57	GO:0046739: transport of virus in multicellular host	2.29E-03
58	GO:1901332: negative regulation of lateral root development	2.29E-03
59	GO:0010088: phloem development	2.29E-03
60	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.29E-03
61	GO:2001141: regulation of RNA biosynthetic process	2.29E-03
62	GO:0051639: actin filament network formation	2.29E-03
63	GO:0009152: purine ribonucleotide biosynthetic process	2.29E-03
64	GO:0046653: tetrahydrofolate metabolic process	2.29E-03
65	GO:0010025: wax biosynthetic process	2.33E-03
66	GO:0051017: actin filament bundle assembly	2.58E-03
67	GO:0009733: response to auxin	2.76E-03
68	GO:0045727: positive regulation of translation	3.08E-03
69	GO:0030104: water homeostasis	3.08E-03
70	GO:0015713: phosphoglycerate transport	3.08E-03
71	GO:0051764: actin crosslink formation	3.08E-03
72	GO:0031408: oxylipin biosynthetic process	3.14E-03
73	GO:0010114: response to red light	3.49E-03
74	GO:0009926: auxin polar transport	3.49E-03
75	GO:0045490: pectin catabolic process	3.68E-03
76	GO:0006564: L-serine biosynthetic process	3.95E-03
77	GO:0010236: plastoquinone biosynthetic process	3.95E-03
78	GO:0031365: N-terminal protein amino acid modification	3.95E-03
79	GO:0006461: protein complex assembly	3.95E-03
80	GO:0019722: calcium-mediated signaling	4.08E-03
81	GO:0000413: protein peptidyl-prolyl isomerization	4.78E-03
82	GO:0009913: epidermal cell differentiation	4.89E-03
83	GO:0010337: regulation of salicylic acid metabolic process	4.89E-03
84	GO:0006561: proline biosynthetic process	4.89E-03
85	GO:0006751: glutathione catabolic process	4.89E-03
86	GO:0048827: phyllome development	4.89E-03
87	GO:0042549: photosystem II stabilization	4.89E-03
88	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.89E-03
89	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.90E-03
90	GO:0006694: steroid biosynthetic process	5.90E-03
91	GO:0010019: chloroplast-nucleus signaling pathway	5.90E-03
92	GO:1900056: negative regulation of leaf senescence	6.98E-03
93	GO:1900057: positive regulation of leaf senescence	6.98E-03
94	GO:0010444: guard mother cell differentiation	6.98E-03
95	GO:0009395: phospholipid catabolic process	6.98E-03
96	GO:0030091: protein repair	8.12E-03
97	GO:0008610: lipid biosynthetic process	8.12E-03
98	GO:0042255: ribosome assembly	8.12E-03
99	GO:0006605: protein targeting	8.12E-03
100	GO:0006353: DNA-templated transcription, termination	8.12E-03
101	GO:0007267: cell-cell signaling	8.22E-03
102	GO:0009734: auxin-activated signaling pathway	9.25E-03
103	GO:0010497: plasmodesmata-mediated intercellular transport	9.33E-03
104	GO:0009657: plastid organization	9.33E-03
105	GO:0009808: lignin metabolic process	9.33E-03
106	GO:0071482: cellular response to light stimulus	9.33E-03
107	GO:0080167: response to karrikin	9.95E-03
108	GO:0009051: pentose-phosphate shunt, oxidative branch	1.06E-02
109	GO:0010205: photoinhibition	1.19E-02
110	GO:0018298: protein-chromophore linkage	1.21E-02
111	GO:0010311: lateral root formation	1.27E-02
112	GO:0006032: chitin catabolic process	1.33E-02
113	GO:0009688: abscisic acid biosynthetic process	1.33E-02
114	GO:0048829: root cap development	1.33E-02
115	GO:0009631: cold acclimation	1.40E-02
116	GO:0043085: positive regulation of catalytic activity	1.47E-02
117	GO:0006352: DNA-templated transcription, initiation	1.47E-02
118	GO:0009750: response to fructose	1.47E-02
119	GO:0018119: peptidyl-cysteine S-nitrosylation	1.47E-02
120	GO:0048765: root hair cell differentiation	1.47E-02
121	GO:0010015: root morphogenesis	1.47E-02
122	GO:0000038: very long-chain fatty acid metabolic process	1.47E-02
123	GO:0009637: response to blue light	1.54E-02
124	GO:0034599: cellular response to oxidative stress	1.61E-02
125	GO:0016024: CDP-diacylglycerol biosynthetic process	1.62E-02
126	GO:0071555: cell wall organization	1.70E-02
127	GO:0030001: metal ion transport	1.75E-02
128	GO:0010628: positive regulation of gene expression	1.78E-02
129	GO:0010102: lateral root morphogenesis	1.78E-02
130	GO:0010229: inflorescence development	1.78E-02
131	GO:0009718: anthocyanin-containing compound biosynthetic process	1.78E-02
132	GO:0010207: photosystem II assembly	1.94E-02
133	GO:0019253: reductive pentose-phosphate cycle	1.94E-02
134	GO:0010540: basipetal auxin transport	1.94E-02
135	GO:0009825: multidimensional cell growth	2.10E-02
136	GO:0010167: response to nitrate	2.10E-02
137	GO:0071732: cellular response to nitric oxide	2.10E-02
138	GO:0010053: root epidermal cell differentiation	2.10E-02
139	GO:0006636: unsaturated fatty acid biosynthetic process	2.27E-02
140	GO:0019762: glucosinolate catabolic process	2.27E-02
141	GO:0000027: ribosomal large subunit assembly	2.44E-02
142	GO:0042538: hyperosmotic salinity response	2.50E-02
143	GO:0009695: jasmonic acid biosynthetic process	2.62E-02
144	GO:0007017: microtubule-based process	2.62E-02
145	GO:0009768: photosynthesis, light harvesting in photosystem I	2.62E-02
146	GO:0019953: sexual reproduction	2.62E-02
147	GO:0009809: lignin biosynthetic process	2.68E-02
148	GO:0061077: chaperone-mediated protein folding	2.81E-02
149	GO:0003333: amino acid transmembrane transport	2.81E-02
150	GO:0016998: cell wall macromolecule catabolic process	2.81E-02
151	GO:0030245: cellulose catabolic process	2.99E-02
152	GO:0009409: response to cold	3.01E-02
153	GO:0071369: cellular response to ethylene stimulus	3.18E-02
154	GO:0006284: base-excision repair	3.38E-02
155	GO:0042127: regulation of cell proliferation	3.38E-02
156	GO:0009306: protein secretion	3.38E-02
157	GO:0080022: primary root development	3.78E-02
158	GO:0008033: tRNA processing	3.78E-02
159	GO:0009624: response to nematode	3.81E-02
160	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.81E-02
161	GO:0009958: positive gravitropism	3.99E-02
162	GO:0006662: glycerol ether metabolic process	3.99E-02
163	GO:0010182: sugar mediated signaling pathway	3.99E-02
164	GO:0009741: response to brassinosteroid	3.99E-02
165	GO:0009742: brassinosteroid mediated signaling pathway	4.04E-02
166	GO:0015986: ATP synthesis coupled proton transport	4.20E-02
167	GO:0009414: response to water deprivation	4.34E-02
168	GO:0048825: cotyledon development	4.41E-02
169	GO:0042742: defense response to bacterium	4.51E-02
170	GO:0045454: cell redox homeostasis	4.55E-02
171	GO:0071554: cell wall organization or biogenesis	4.63E-02
172	GO:0000302: response to reactive oxygen species	4.63E-02
173	GO:0002229: defense response to oomycetes	4.63E-02
174	GO:0016132: brassinosteroid biosynthetic process	4.63E-02
175	GO:0032502: developmental process	4.85E-02
176	GO:0009630: gravitropism	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
2	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
3	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:0050614: delta24-sterol reductase activity	0.00E+00
10	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
11	GO:0019843: rRNA binding	2.22E-19
12	GO:0003735: structural constituent of ribosome	3.50E-11
13	GO:0005528: FK506 binding	8.48E-09
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.23E-08
15	GO:0016788: hydrolase activity, acting on ester bonds	1.10E-05
16	GO:0052689: carboxylic ester hydrolase activity	3.03E-05
17	GO:0016851: magnesium chelatase activity	6.67E-05
18	GO:0001872: (1->3)-beta-D-glucan binding	6.67E-05
19	GO:0008266: poly(U) RNA binding	1.61E-04
20	GO:0015250: water channel activity	1.72E-04
21	GO:0030570: pectate lyase activity	4.24E-04
22	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.51E-04
23	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	4.51E-04
24	GO:0004321: fatty-acyl-CoA synthase activity	4.51E-04
25	GO:0015200: methylammonium transmembrane transporter activity	4.51E-04
26	GO:0019210: kinase inhibitor activity	4.51E-04
27	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	4.51E-04
28	GO:0030794: (S)-coclaurine-N-methyltransferase activity	4.51E-04
29	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	9.73E-04
30	GO:0003839: gamma-glutamylcyclotransferase activity	9.73E-04
31	GO:0004617: phosphoglycerate dehydrogenase activity	9.73E-04
32	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	9.73E-04
33	GO:0050734: hydroxycinnamoyltransferase activity	1.58E-03
34	GO:0030267: glyoxylate reductase (NADP) activity	1.58E-03
35	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.58E-03
36	GO:0008864: formyltetrahydrofolate deformylase activity	1.58E-03
37	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.58E-03
38	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	1.58E-03
39	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	1.58E-03
40	GO:0030247: polysaccharide binding	1.63E-03
41	GO:0043023: ribosomal large subunit binding	2.29E-03
42	GO:0008097: 5S rRNA binding	2.29E-03
43	GO:0008289: lipid binding	2.67E-03
44	GO:0016987: sigma factor activity	3.08E-03
45	GO:0010328: auxin influx transmembrane transporter activity	3.08E-03
46	GO:0052793: pectin acetylesterase activity	3.08E-03
47	GO:0043495: protein anchor	3.08E-03
48	GO:0004392: heme oxygenase (decyclizing) activity	3.08E-03
49	GO:0015204: urea transmembrane transporter activity	3.08E-03
50	GO:0015120: phosphoglycerate transmembrane transporter activity	3.08E-03
51	GO:0004659: prenyltransferase activity	3.08E-03
52	GO:0001053: plastid sigma factor activity	3.08E-03
53	GO:0010011: auxin binding	3.08E-03
54	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.08E-03
55	GO:0004871: signal transducer activity	3.82E-03
56	GO:0004040: amidase activity	3.95E-03
57	GO:0008725: DNA-3-methyladenine glycosylase activity	3.95E-03
58	GO:0004130: cytochrome-c peroxidase activity	4.89E-03
59	GO:0016208: AMP binding	4.89E-03
60	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.89E-03
61	GO:0016688: L-ascorbate peroxidase activity	4.89E-03
62	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.89E-03
63	GO:0008519: ammonium transmembrane transporter activity	4.89E-03
64	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.90E-03
65	GO:0051753: mannan synthase activity	5.90E-03
66	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.90E-03
67	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.90E-03
68	GO:0051920: peroxiredoxin activity	5.90E-03
69	GO:0019899: enzyme binding	6.98E-03
70	GO:0008235: metalloexopeptidase activity	6.98E-03
71	GO:0051015: actin filament binding	7.26E-03
72	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.45E-03
73	GO:0016791: phosphatase activity	7.73E-03
74	GO:0052747: sinapyl alcohol dehydrogenase activity	8.12E-03
75	GO:0004033: aldo-keto reductase (NADP) activity	8.12E-03
76	GO:0030674: protein binding, bridging	8.12E-03
77	GO:0016209: antioxidant activity	8.12E-03
78	GO:0016746: transferase activity, transferring acyl groups	8.33E-03
79	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	9.33E-03
80	GO:0016168: chlorophyll binding	9.78E-03
81	GO:0016207: 4-coumarate-CoA ligase activity	1.06E-02
82	GO:0016829: lyase activity	1.18E-02
83	GO:0047617: acyl-CoA hydrolase activity	1.19E-02
84	GO:0004568: chitinase activity	1.33E-02
85	GO:0008047: enzyme activator activity	1.33E-02
86	GO:0005509: calcium ion binding	1.46E-02
87	GO:0004177: aminopeptidase activity	1.47E-02
88	GO:0003993: acid phosphatase activity	1.61E-02
89	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.62E-02
90	GO:0050661: NADP binding	1.75E-02
91	GO:0004565: beta-galactosidase activity	1.78E-02
92	GO:0004022: alcohol dehydrogenase (NAD) activity	1.78E-02
93	GO:0051537: 2 iron, 2 sulfur cluster binding	2.15E-02
94	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.27E-02
95	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.27E-02
96	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.27E-02
97	GO:0031409: pigment binding	2.27E-02
98	GO:0051287: NAD binding	2.41E-02
99	GO:0015079: potassium ion transmembrane transporter activity	2.62E-02
100	GO:0003690: double-stranded DNA binding	2.77E-02
101	GO:0008810: cellulase activity	3.18E-02
102	GO:0022891: substrate-specific transmembrane transporter activity	3.18E-02
103	GO:0003727: single-stranded RNA binding	3.38E-02
104	GO:0047134: protein-disulfide reductase activity	3.58E-02
105	GO:0030599: pectinesterase activity	3.59E-02
106	GO:0008080: N-acetyltransferase activity	3.99E-02
107	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.99E-02
108	GO:0050662: coenzyme binding	4.20E-02
109	GO:0004791: thioredoxin-disulfide reductase activity	4.20E-02
110	GO:0004872: receptor activity	4.41E-02
111	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.63E-02
112	GO:0004518: nuclease activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	4.19E-30
4	GO:0009570: chloroplast stroma	2.28E-25
5	GO:0009579: thylakoid	5.14E-21
6	GO:0009535: chloroplast thylakoid membrane	1.72E-20
7	GO:0009941: chloroplast envelope	6.92E-20
8	GO:0009543: chloroplast thylakoid lumen	2.22E-19
9	GO:0009534: chloroplast thylakoid	5.62E-15
10	GO:0031977: thylakoid lumen	4.36E-13
11	GO:0005840: ribosome	9.87E-12
12	GO:0009654: photosystem II oxygen evolving complex	5.52E-07
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.86E-07
14	GO:0031225: anchored component of membrane	3.21E-06
15	GO:0019898: extrinsic component of membrane	4.24E-06
16	GO:0016020: membrane	5.67E-06
17	GO:0046658: anchored component of plasma membrane	5.89E-06
18	GO:0030095: chloroplast photosystem II	6.86E-06
19	GO:0005618: cell wall	8.32E-06
20	GO:0048046: apoplast	2.00E-05
21	GO:0010007: magnesium chelatase complex	3.09E-05
22	GO:0009505: plant-type cell wall	3.15E-05
23	GO:0005576: extracellular region	3.81E-05
24	GO:0005886: plasma membrane	3.91E-04
25	GO:0042807: central vacuole	4.42E-04
26	GO:0043674: columella	4.51E-04
27	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.51E-04
28	GO:0009547: plastid ribosome	4.51E-04
29	GO:0031969: chloroplast membrane	6.40E-04
30	GO:0009523: photosystem II	7.68E-04
31	GO:0008180: COP9 signalosome	8.05E-04
32	GO:0000311: plastid large ribosomal subunit	1.45E-03
33	GO:0000312: plastid small ribosomal subunit	1.86E-03
34	GO:0032432: actin filament bundle	2.29E-03
35	GO:0015630: microtubule cytoskeleton	2.29E-03
36	GO:0042651: thylakoid membrane	2.85E-03
37	GO:0009506: plasmodesma	4.79E-03
38	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.89E-03
39	GO:0009986: cell surface	6.98E-03
40	GO:0009533: chloroplast stromal thylakoid	6.98E-03
41	GO:0010319: stromule	8.22E-03
42	GO:0000326: protein storage vacuole	9.33E-03
43	GO:0009536: plastid	9.44E-03
44	GO:0010287: plastoglobule	9.98E-03
45	GO:0019005: SCF ubiquitin ligase complex	1.21E-02
46	GO:0015934: large ribosomal subunit	1.40E-02
47	GO:0005884: actin filament	1.47E-02
48	GO:0030076: light-harvesting complex	2.10E-02
49	GO:0000502: proteasome complex	2.68E-02
50	GO:0005887: integral component of plasma membrane	2.82E-02
51	GO:0015629: actin cytoskeleton	3.18E-02
52	GO:0005770: late endosome	3.99E-02
53	GO:0009522: photosystem I	4.20E-02