co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G12490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
2	GO:0008614: pyridoxine metabolic process	0.00E+00
3	GO:0032780: negative regulation of ATPase activity	0.00E+00
4	GO:0010111: glyoxysome organization	0.00E+00
5	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
6	GO:0000390: spliceosomal complex disassembly	0.00E+00
7	GO:0046109: uridine biosynthetic process	0.00E+00
8	GO:0006105: succinate metabolic process	0.00E+00
9	GO:0070482: response to oxygen levels	0.00E+00
10	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
11	GO:0019484: beta-alanine catabolic process	0.00E+00
12	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
13	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
14	GO:0010730: negative regulation of hydrogen peroxide biosynthetic process	0.00E+00
15	GO:0035269: protein O-linked mannosylation	0.00E+00
16	GO:0070291: N-acylethanolamine metabolic process	0.00E+00
17	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
18	GO:0019509: L-methionine salvage from methylthioadenosine	7.74E-05
19	GO:0006333: chromatin assembly or disassembly	1.03E-04
20	GO:0006635: fatty acid beta-oxidation	1.33E-04
21	GO:0035266: meristem growth	1.73E-04
22	GO:0009450: gamma-aminobutyric acid catabolic process	1.73E-04
23	GO:0007292: female gamete generation	1.73E-04
24	GO:0019628: urate catabolic process	1.73E-04
25	GO:0009865: pollen tube adhesion	1.73E-04
26	GO:0006540: glutamate decarboxylation to succinate	1.73E-04
27	GO:0006144: purine nucleobase metabolic process	1.73E-04
28	GO:0046167: glycerol-3-phosphate biosynthetic process	1.73E-04
29	GO:0046686: response to cadmium ion	1.88E-04
30	GO:0048829: root cap development	2.85E-04
31	GO:0010033: response to organic substance	3.92E-04
32	GO:0015804: neutral amino acid transport	3.92E-04
33	GO:0050684: regulation of mRNA processing	3.92E-04
34	GO:0006641: triglyceride metabolic process	3.92E-04
35	GO:0042819: vitamin B6 biosynthetic process	3.92E-04
36	GO:0051788: response to misfolded protein	3.92E-04
37	GO:0051258: protein polymerization	3.92E-04
38	GO:0019395: fatty acid oxidation	3.92E-04
39	GO:0006541: glutamine metabolic process	4.87E-04
40	GO:0030029: actin filament-based process	6.40E-04
41	GO:0060968: regulation of gene silencing	6.40E-04
42	GO:0042344: indole glucosinolate catabolic process	6.40E-04
43	GO:0019563: glycerol catabolic process	6.40E-04
44	GO:0032784: regulation of DNA-templated transcription, elongation	6.40E-04
45	GO:0009695: jasmonic acid biosynthetic process	7.39E-04
46	GO:0006020: inositol metabolic process	9.13E-04
47	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.13E-04
48	GO:0006072: glycerol-3-phosphate metabolic process	9.13E-04
49	GO:0015749: monosaccharide transport	9.13E-04
50	GO:0008615: pyridoxine biosynthetic process	9.13E-04
51	GO:0009399: nitrogen fixation	9.13E-04
52	GO:0042823: pyridoxal phosphate biosynthetic process	9.13E-04
53	GO:0071215: cellular response to abscisic acid stimulus	9.60E-04
54	GO:0070534: protein K63-linked ubiquitination	1.21E-03
55	GO:0033320: UDP-D-xylose biosynthetic process	1.21E-03
56	GO:1902584: positive regulation of response to water deprivation	1.21E-03
57	GO:0006536: glutamate metabolic process	1.21E-03
58	GO:0042273: ribosomal large subunit biogenesis	1.21E-03
59	GO:0010188: response to microbial phytotoxin	1.21E-03
60	GO:0006646: phosphatidylethanolamine biosynthetic process	1.21E-03
61	GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA	1.54E-03
62	GO:0098719: sodium ion import across plasma membrane	1.54E-03
63	GO:0043097: pyrimidine nucleoside salvage	1.54E-03
64	GO:0005513: detection of calcium ion	1.54E-03
65	GO:0048827: phyllome development	1.89E-03
66	GO:0016070: RNA metabolic process	1.89E-03
67	GO:0048232: male gamete generation	1.89E-03
68	GO:0006555: methionine metabolic process	1.89E-03
69	GO:0043248: proteasome assembly	1.89E-03
70	GO:0042732: D-xylose metabolic process	1.89E-03
71	GO:0034314: Arp2/3 complex-mediated actin nucleation	1.89E-03
72	GO:0006206: pyrimidine nucleobase metabolic process	1.89E-03
73	GO:0006014: D-ribose metabolic process	1.89E-03
74	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.89E-03
75	GO:0006301: postreplication repair	1.89E-03
76	GO:0009612: response to mechanical stimulus	2.27E-03
77	GO:0048280: vesicle fusion with Golgi apparatus	2.27E-03
78	GO:0001666: response to hypoxia	2.30E-03
79	GO:0006401: RNA catabolic process	2.67E-03
80	GO:0098869: cellular oxidant detoxification	2.67E-03
81	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.67E-03
82	GO:0048573: photoperiodism, flowering	2.70E-03
83	GO:0016559: peroxisome fission	3.09E-03
84	GO:0030091: protein repair	3.09E-03
85	GO:0006605: protein targeting	3.09E-03
86	GO:0009415: response to water	3.09E-03
87	GO:0010078: maintenance of root meristem identity	3.09E-03
88	GO:0006506: GPI anchor biosynthetic process	3.09E-03
89	GO:0010311: lateral root formation	3.14E-03
90	GO:0006499: N-terminal protein myristoylation	3.29E-03
91	GO:0009617: response to bacterium	3.40E-03
92	GO:0009631: cold acclimation	3.45E-03
93	GO:0045087: innate immune response	3.78E-03
94	GO:0009051: pentose-phosphate shunt, oxidative branch	4.00E-03
95	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.00E-03
96	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	4.00E-03
97	GO:0046916: cellular transition metal ion homeostasis	4.00E-03
98	GO:0000902: cell morphogenesis	4.00E-03
99	GO:0006979: response to oxidative stress	4.12E-03
100	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.49E-03
101	GO:0008202: steroid metabolic process	4.49E-03
102	GO:0051453: regulation of intracellular pH	4.49E-03
103	GO:0006896: Golgi to vacuole transport	4.99E-03
104	GO:0010015: root morphogenesis	5.52E-03
105	GO:0009682: induced systemic resistance	5.52E-03
106	GO:0052544: defense response by callose deposition in cell wall	5.52E-03
107	GO:0000266: mitochondrial fission	6.06E-03
108	GO:0071365: cellular response to auxin stimulus	6.06E-03
109	GO:0010102: lateral root morphogenesis	6.61E-03
110	GO:0006006: glucose metabolic process	6.61E-03
111	GO:0030036: actin cytoskeleton organization	6.61E-03
112	GO:0046777: protein autophosphorylation	6.76E-03
113	GO:0048467: gynoecium development	7.20E-03
114	GO:0007034: vacuolar transport	7.20E-03
115	GO:0002237: response to molecule of bacterial origin	7.20E-03
116	GO:0009933: meristem structural organization	7.20E-03
117	GO:0007015: actin filament organization	7.20E-03
118	GO:0010053: root epidermal cell differentiation	7.79E-03
119	GO:0009225: nucleotide-sugar metabolic process	7.79E-03
120	GO:0007031: peroxisome organization	7.79E-03
121	GO:0009825: multidimensional cell growth	7.79E-03
122	GO:0010167: response to nitrate	7.79E-03
123	GO:0010039: response to iron ion	7.79E-03
124	GO:0005985: sucrose metabolic process	7.79E-03
125	GO:0071732: cellular response to nitric oxide	7.79E-03
126	GO:0090351: seedling development	7.79E-03
127	GO:0048367: shoot system development	8.00E-03
128	GO:0006511: ubiquitin-dependent protein catabolic process	8.10E-03
129	GO:0000162: tryptophan biosynthetic process	8.41E-03
130	GO:0034976: response to endoplasmic reticulum stress	8.41E-03
131	GO:2000377: regulation of reactive oxygen species metabolic process	9.03E-03
132	GO:0018105: peptidyl-serine phosphorylation	9.61E-03
133	GO:0051302: regulation of cell division	9.69E-03
134	GO:0031408: oxylipin biosynthetic process	1.03E-02
135	GO:0003333: amino acid transmembrane transport	1.03E-02
136	GO:0048364: root development	1.07E-02
137	GO:0000398: mRNA splicing, via spliceosome	1.08E-02
138	GO:0030433: ubiquitin-dependent ERAD pathway	1.10E-02
139	GO:0007005: mitochondrion organization	1.10E-02
140	GO:0071369: cellular response to ethylene stimulus	1.17E-02
141	GO:0055114: oxidation-reduction process	1.19E-02
142	GO:0009845: seed germination	1.27E-02
143	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.32E-02
144	GO:0042147: retrograde transport, endosome to Golgi	1.32E-02
145	GO:0042631: cellular response to water deprivation	1.39E-02
146	GO:0042391: regulation of membrane potential	1.39E-02
147	GO:0000413: protein peptidyl-prolyl isomerization	1.39E-02
148	GO:0010051: xylem and phloem pattern formation	1.39E-02
149	GO:0007165: signal transduction	1.46E-02
150	GO:0006633: fatty acid biosynthetic process	1.47E-02
151	GO:0010154: fruit development	1.47E-02
152	GO:0046323: glucose import	1.47E-02
153	GO:0042742: defense response to bacterium	1.48E-02
154	GO:0042752: regulation of circadian rhythm	1.54E-02
155	GO:0006814: sodium ion transport	1.54E-02
156	GO:0006623: protein targeting to vacuole	1.62E-02
157	GO:0010183: pollen tube guidance	1.62E-02
158	GO:0009749: response to glucose	1.62E-02
159	GO:0019252: starch biosynthetic process	1.62E-02
160	GO:0008654: phospholipid biosynthetic process	1.62E-02
161	GO:0006891: intra-Golgi vesicle-mediated transport	1.70E-02
162	GO:0009630: gravitropism	1.78E-02
163	GO:0071281: cellular response to iron ion	1.87E-02
164	GO:0010090: trichome morphogenesis	1.87E-02
165	GO:0019760: glucosinolate metabolic process	1.95E-02
166	GO:0006464: cellular protein modification process	1.95E-02
167	GO:0006914: autophagy	1.95E-02
168	GO:0010286: heat acclimation	2.04E-02
169	GO:0071805: potassium ion transmembrane transport	2.04E-02
170	GO:0009611: response to wounding	2.16E-02
171	GO:0035556: intracellular signal transduction	2.25E-02
172	GO:0010029: regulation of seed germination	2.30E-02
173	GO:0006888: ER to Golgi vesicle-mediated transport	2.48E-02
174	GO:0006950: response to stress	2.48E-02
175	GO:0009817: defense response to fungus, incompatible interaction	2.67E-02
176	GO:0030244: cellulose biosynthetic process	2.67E-02
177	GO:0006970: response to osmotic stress	2.70E-02
178	GO:0006457: protein folding	2.91E-02
179	GO:0009910: negative regulation of flower development	2.96E-02
180	GO:0006865: amino acid transport	3.06E-02
181	GO:0080167: response to karrikin	3.11E-02
182	GO:0016051: carbohydrate biosynthetic process	3.16E-02
183	GO:0006099: tricarboxylic acid cycle	3.27E-02
184	GO:0034599: cellular response to oxidative stress	3.27E-02
185	GO:0030001: metal ion transport	3.47E-02
186	GO:0006897: endocytosis	3.58E-02
187	GO:0045454: cell redox homeostasis	3.72E-02
188	GO:0006886: intracellular protein transport	3.83E-02
189	GO:0009965: leaf morphogenesis	4.12E-02
190	GO:0031347: regulation of defense response	4.34E-02
191	GO:0042538: hyperosmotic salinity response	4.45E-02
192	GO:0006486: protein glycosylation	4.68E-02
193	GO:0006397: mRNA processing	4.76E-02
194	GO:0010224: response to UV-B	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:1990446: U1 snRNP binding	0.00E+00
2	GO:0046522: S-methyl-5-thioribose kinase activity	0.00E+00
3	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
4	GO:0008901: ferredoxin hydrogenase activity	0.00E+00
5	GO:0004359: glutaminase activity	0.00E+00
6	GO:0103073: anandamide amidohydrolase activity	0.00E+00
7	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	0.00E+00
8	GO:0102077: oleamide hydrolase activity	0.00E+00
9	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
10	GO:0070191: methionine-R-sulfoxide reductase activity	0.00E+00
11	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
12	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
13	GO:0004370: glycerol kinase activity	0.00E+00
14	GO:0004846: urate oxidase activity	0.00E+00
15	GO:0042030: ATPase inhibitor activity	0.00E+00
16	GO:0047412: N-(long-chain-acyl)ethanolamine deacylase activity	0.00E+00
17	GO:0004180: carboxypeptidase activity	5.37E-06
18	GO:0030527: structural constituent of chromatin	1.24E-05
19	GO:0009679: hexose:proton symporter activity	1.73E-04
20	GO:0035671: enone reductase activity	1.73E-04
21	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	1.73E-04
22	GO:0046870: cadmium ion binding	1.73E-04
23	GO:0016274: protein-arginine N-methyltransferase activity	1.73E-04
24	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.73E-04
25	GO:0003867: 4-aminobutyrate transaminase activity	1.73E-04
26	GO:0019707: protein-cysteine S-acyltransferase activity	1.73E-04
27	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.41E-04
28	GO:0004609: phosphatidylserine decarboxylase activity	3.92E-04
29	GO:0004582: dolichyl-phosphate beta-D-mannosyltransferase activity	3.92E-04
30	GO:0004750: ribulose-phosphate 3-epimerase activity	3.92E-04
31	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	3.92E-04
32	GO:0004839: ubiquitin activating enzyme activity	3.92E-04
33	GO:0019200: carbohydrate kinase activity	3.92E-04
34	GO:0003988: acetyl-CoA C-acyltransferase activity	3.92E-04
35	GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity	3.92E-04
36	GO:0015172: acidic amino acid transmembrane transporter activity	3.92E-04
37	GO:0032791: lead ion binding	3.92E-04
38	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.40E-04
39	GO:0005047: signal recognition particle binding	6.40E-04
40	GO:0004751: ribose-5-phosphate isomerase activity	6.40E-04
41	GO:0004383: guanylate cyclase activity	6.40E-04
42	GO:0015175: neutral amino acid transmembrane transporter activity	9.13E-04
43	GO:0001653: peptide receptor activity	9.13E-04
44	GO:0004108: citrate (Si)-synthase activity	9.13E-04
45	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	9.13E-04
46	GO:0000339: RNA cap binding	9.13E-04
47	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.13E-04
48	GO:0004300: enoyl-CoA hydratase activity	9.13E-04
49	GO:0004834: tryptophan synthase activity	1.21E-03
50	GO:0004737: pyruvate decarboxylase activity	1.21E-03
51	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.21E-03
52	GO:0043015: gamma-tubulin binding	1.21E-03
53	GO:0015145: monosaccharide transmembrane transporter activity	1.54E-03
54	GO:0008641: small protein activating enzyme activity	1.54E-03
55	GO:0004040: amidase activity	1.54E-03
56	GO:0004356: glutamate-ammonia ligase activity	1.54E-03
57	GO:0030976: thiamine pyrophosphate binding	1.89E-03
58	GO:0048040: UDP-glucuronate decarboxylase activity	1.89E-03
59	GO:0019137: thioglucosidase activity	1.89E-03
60	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.89E-03
61	GO:0036402: proteasome-activating ATPase activity	1.89E-03
62	GO:0070403: NAD+ binding	2.27E-03
63	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.27E-03
64	GO:0004849: uridine kinase activity	2.27E-03
65	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.27E-03
66	GO:0003730: mRNA 3'-UTR binding	2.27E-03
67	GO:0004747: ribokinase activity	2.27E-03
68	GO:0004602: glutathione peroxidase activity	2.27E-03
69	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.27E-03
70	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.56E-03
71	GO:0016831: carboxy-lyase activity	2.67E-03
72	GO:0004683: calmodulin-dependent protein kinase activity	2.70E-03
73	GO:0008236: serine-type peptidase activity	2.84E-03
74	GO:0004869: cysteine-type endopeptidase inhibitor activity	3.09E-03
75	GO:0008865: fructokinase activity	3.09E-03
76	GO:0015386: potassium:proton antiporter activity	5.52E-03
77	GO:0030552: cAMP binding	7.79E-03
78	GO:0004867: serine-type endopeptidase inhibitor activity	7.79E-03
79	GO:0030553: cGMP binding	7.79E-03
80	GO:0017025: TBP-class protein binding	7.79E-03
81	GO:0005515: protein binding	8.58E-03
82	GO:0005507: copper ion binding	8.70E-03
83	GO:0043130: ubiquitin binding	9.03E-03
84	GO:0005516: calmodulin binding	9.46E-03
85	GO:0043424: protein histidine kinase binding	9.69E-03
86	GO:0005216: ion channel activity	9.69E-03
87	GO:0005524: ATP binding	1.01E-02
88	GO:0003756: protein disulfide isomerase activity	1.24E-02
89	GO:0030551: cyclic nucleotide binding	1.39E-02
90	GO:0005249: voltage-gated potassium channel activity	1.39E-02
91	GO:0015144: carbohydrate transmembrane transporter activity	1.40E-02
92	GO:0016853: isomerase activity	1.54E-02
93	GO:0005351: sugar:proton symporter activity	1.58E-02
94	GO:0004872: receptor activity	1.62E-02
95	GO:0004518: nuclease activity	1.78E-02
96	GO:0015385: sodium:proton antiporter activity	1.87E-02
97	GO:0005200: structural constituent of cytoskeleton	2.04E-02
98	GO:0000166: nucleotide binding	2.11E-02
99	GO:0016491: oxidoreductase activity	2.23E-02
100	GO:0102483: scopolin beta-glucosidase activity	2.48E-02
101	GO:0030247: polysaccharide binding	2.48E-02
102	GO:0003682: chromatin binding	2.65E-02
103	GO:0005096: GTPase activator activity	2.77E-02
104	GO:0050897: cobalt ion binding	2.96E-02
105	GO:0061630: ubiquitin protein ligase activity	3.27E-02
106	GO:0008422: beta-glucosidase activity	3.37E-02
107	GO:0000149: SNARE binding	3.37E-02
108	GO:0050661: NADP binding	3.47E-02
109	GO:0051539: 4 iron, 4 sulfur cluster binding	3.47E-02
110	GO:0005484: SNAP receptor activity	3.79E-02
111	GO:0043621: protein self-association	4.01E-02
112	GO:0015293: symporter activity	4.12E-02
113	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.23E-02
114	GO:0005509: calcium ion binding	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0005684: U2-type spliceosomal complex	0.00E+00
3	GO:1903600: glutaminase complex	0.00E+00
4	GO:0031981: nuclear lumen	0.00E+00
5	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
6	GO:0005829: cytosol	1.34E-05
7	GO:0005737: cytoplasm	1.69E-04
8	GO:0005777: peroxisome	3.43E-04
9	GO:0005783: endoplasmic reticulum	3.44E-04
10	GO:0033185: dolichol-phosphate-mannose synthase complex	3.92E-04
11	GO:0031372: UBC13-MMS2 complex	1.21E-03
12	GO:0000785: chromatin	1.70E-03
13	GO:0030140: trans-Golgi network transport vesicle	1.89E-03
14	GO:0016363: nuclear matrix	2.27E-03
15	GO:0031597: cytosolic proteasome complex	2.27E-03
16	GO:0005885: Arp2/3 protein complex	2.27E-03
17	GO:0000815: ESCRT III complex	2.27E-03
18	GO:0030687: preribosome, large subunit precursor	2.67E-03
19	GO:0031595: nuclear proteasome complex	2.67E-03
20	GO:0030131: clathrin adaptor complex	3.09E-03
21	GO:0012507: ER to Golgi transport vesicle membrane	3.09E-03
22	GO:0009514: glyoxysome	3.54E-03
23	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.54E-03
24	GO:0031902: late endosome membrane	4.49E-03
25	GO:0008540: proteasome regulatory particle, base subcomplex	4.49E-03
26	GO:0005886: plasma membrane	4.72E-03
27	GO:0030125: clathrin vesicle coat	4.99E-03
28	GO:0005686: U2 snRNP	4.99E-03
29	GO:0005789: endoplasmic reticulum membrane	8.51E-03
30	GO:0005741: mitochondrial outer membrane	1.03E-02
31	GO:0005905: clathrin-coated pit	1.03E-02
32	GO:0005773: vacuole	1.05E-02
33	GO:0005774: vacuolar membrane	1.23E-02
34	GO:0005759: mitochondrial matrix	1.47E-02
35	GO:0005770: late endosome	1.47E-02
36	GO:0031965: nuclear membrane	1.62E-02
37	GO:0032580: Golgi cisterna membrane	1.95E-02
38	GO:0005778: peroxisomal membrane	2.04E-02
39	GO:0000932: P-body	2.21E-02
40	GO:0005788: endoplasmic reticulum lumen	2.30E-02
41	GO:0000325: plant-type vacuole	2.96E-02
42	GO:0031201: SNARE complex	3.58E-02
43	GO:0000502: proteasome complex	4.68E-02