GO Enrichment Analysis of Co-expressed Genes with
AT3G12390
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 3 | GO:0006412: translation | 8.10E-07 |
| 4 | GO:0031120: snRNA pseudouridine synthesis | 6.06E-06 |
| 5 | GO:0031118: rRNA pseudouridine synthesis | 6.06E-06 |
| 6 | GO:0000494: box C/D snoRNA 3'-end processing | 6.06E-06 |
| 7 | GO:1990258: histone glutamine methylation | 6.06E-06 |
| 8 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 1.65E-05 |
| 9 | GO:0008652: cellular amino acid biosynthetic process | 3.04E-05 |
| 10 | GO:0044205: 'de novo' UMP biosynthetic process | 6.61E-05 |
| 11 | GO:0031167: rRNA methylation | 8.72E-05 |
| 12 | GO:0009088: threonine biosynthetic process | 1.34E-04 |
| 13 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 1.60E-04 |
| 14 | GO:0001510: RNA methylation | 2.14E-04 |
| 15 | GO:0010162: seed dormancy process | 3.02E-04 |
| 16 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.33E-04 |
| 17 | GO:0010229: inflorescence development | 3.97E-04 |
| 18 | GO:0009944: polarity specification of adaxial/abaxial axis | 5.33E-04 |
| 19 | GO:0006334: nucleosome assembly | 6.04E-04 |
| 20 | GO:0009294: DNA mediated transformation | 6.76E-04 |
| 21 | GO:0008033: tRNA processing | 7.91E-04 |
| 22 | GO:0006520: cellular amino acid metabolic process | 8.30E-04 |
| 23 | GO:0009791: post-embryonic development | 9.08E-04 |
| 24 | GO:0000154: rRNA modification | 2.14E-03 |
| 25 | GO:0006364: rRNA processing | 2.41E-03 |
| 26 | GO:0016036: cellular response to phosphate starvation | 4.23E-03 |
| 27 | GO:0009451: RNA modification | 4.50E-03 |
| 28 | GO:0045892: negative regulation of transcription, DNA-templated | 7.96E-03 |
| 29 | GO:0009908: flower development | 1.27E-02 |
| 30 | GO:0046686: response to cadmium ion | 3.10E-02 |
| 31 | GO:0016310: phosphorylation | 4.28E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004070: aspartate carbamoyltransferase activity | 0.00E+00 |
| 2 | GO:0003735: structural constituent of ribosome | 4.17E-08 |
| 3 | GO:0030515: snoRNA binding | 4.74E-07 |
| 4 | GO:1990259: histone-glutamine methyltransferase activity | 6.06E-06 |
| 5 | GO:0016743: carboxyl- or carbamoyltransferase activity | 1.65E-05 |
| 6 | GO:0016597: amino acid binding | 2.52E-05 |
| 7 | GO:0008649: rRNA methyltransferase activity | 3.04E-05 |
| 8 | GO:0004072: aspartate kinase activity | 4.72E-05 |
| 9 | GO:0004017: adenylate kinase activity | 1.34E-04 |
| 10 | GO:0009982: pseudouridine synthase activity | 3.97E-04 |
| 11 | GO:0003723: RNA binding | 4.35E-04 |
| 12 | GO:0004407: histone deacetylase activity | 5.33E-04 |
| 13 | GO:0005528: FK506 binding | 5.33E-04 |
| 14 | GO:0042393: histone binding | 1.82E-03 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.19E-03 |
| 16 | GO:0008026: ATP-dependent helicase activity | 3.18E-03 |
| 17 | GO:0004519: endonuclease activity | 9.66E-03 |
| 18 | GO:0005507: copper ion binding | 1.75E-02 |
| 19 | GO:0003729: mRNA binding | 3.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005730: nucleolus | 7.39E-14 |
| 2 | GO:0031428: box C/D snoRNP complex | 2.26E-07 |
| 3 | GO:0005840: ribosome | 3.03E-07 |
| 4 | GO:0022625: cytosolic large ribosomal subunit | 3.12E-07 |
| 5 | GO:0022626: cytosolic ribosome | 2.13E-06 |
| 6 | GO:0032040: small-subunit processome | 2.51E-06 |
| 7 | GO:0015934: large ribosomal subunit | 4.39E-05 |
| 8 | GO:0031429: box H/ACA snoRNP complex | 4.72E-05 |
| 9 | GO:0015030: Cajal body | 2.72E-04 |
| 10 | GO:0009506: plasmodesma | 9.65E-04 |
| 11 | GO:0016592: mediator complex | 9.90E-04 |
| 12 | GO:0005773: vacuole | 1.76E-03 |
| 13 | GO:0005829: cytosol | 2.12E-03 |
| 14 | GO:0005774: vacuolar membrane | 7.83E-03 |
| 15 | GO:0005618: cell wall | 8.96E-03 |
| 16 | GO:0009570: chloroplast stroma | 1.49E-02 |