GO Enrichment Analysis of Co-expressed Genes with
AT3G11700
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 2 | GO:0006573: valine metabolic process | 0.00E+00 |
| 3 | GO:0051503: adenine nucleotide transport | 0.00E+00 |
| 4 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.78E-05 |
| 5 | GO:0071555: cell wall organization | 5.37E-05 |
| 6 | GO:0042335: cuticle development | 8.95E-05 |
| 7 | GO:0000271: polysaccharide biosynthetic process | 8.95E-05 |
| 8 | GO:0045489: pectin biosynthetic process | 1.00E-04 |
| 9 | GO:0008610: lipid biosynthetic process | 1.35E-04 |
| 10 | GO:0010442: guard cell morphogenesis | 1.75E-04 |
| 11 | GO:0071370: cellular response to gibberellin stimulus | 1.75E-04 |
| 12 | GO:0006723: cuticle hydrocarbon biosynthetic process | 1.75E-04 |
| 13 | GO:0042547: cell wall modification involved in multidimensional cell growth | 1.75E-04 |
| 14 | GO:0006551: leucine metabolic process | 1.75E-04 |
| 15 | GO:0016126: sterol biosynthetic process | 2.30E-04 |
| 16 | GO:0010411: xyloglucan metabolic process | 2.87E-04 |
| 17 | GO:0000038: very long-chain fatty acid metabolic process | 3.36E-04 |
| 18 | GO:0006650: glycerophospholipid metabolic process | 3.96E-04 |
| 19 | GO:1900111: positive regulation of histone H3-K9 dimethylation | 3.96E-04 |
| 20 | GO:2000123: positive regulation of stomatal complex development | 3.96E-04 |
| 21 | GO:0048587: regulation of short-day photoperiodism, flowering | 3.96E-04 |
| 22 | GO:0052541: plant-type cell wall cellulose metabolic process | 3.96E-04 |
| 23 | GO:0006695: cholesterol biosynthetic process | 3.96E-04 |
| 24 | GO:0016051: carbohydrate biosynthetic process | 4.48E-04 |
| 25 | GO:0010025: wax biosynthetic process | 6.18E-04 |
| 26 | GO:0043447: alkane biosynthetic process | 6.47E-04 |
| 27 | GO:0032922: circadian regulation of gene expression | 6.47E-04 |
| 28 | GO:0042546: cell wall biogenesis | 6.51E-04 |
| 29 | GO:0051016: barbed-end actin filament capping | 9.23E-04 |
| 30 | GO:0009855: determination of bilateral symmetry | 9.23E-04 |
| 31 | GO:0010371: regulation of gibberellin biosynthetic process | 9.23E-04 |
| 32 | GO:0046902: regulation of mitochondrial membrane permeability | 9.23E-04 |
| 33 | GO:2000122: negative regulation of stomatal complex development | 1.22E-03 |
| 34 | GO:2000038: regulation of stomatal complex development | 1.22E-03 |
| 35 | GO:0006546: glycine catabolic process | 1.22E-03 |
| 36 | GO:0010037: response to carbon dioxide | 1.22E-03 |
| 37 | GO:0006808: regulation of nitrogen utilization | 1.22E-03 |
| 38 | GO:0015976: carbon utilization | 1.22E-03 |
| 39 | GO:0006085: acetyl-CoA biosynthetic process | 1.22E-03 |
| 40 | GO:0032876: negative regulation of DNA endoreduplication | 1.56E-03 |
| 41 | GO:0010375: stomatal complex patterning | 1.56E-03 |
| 42 | GO:0071554: cell wall organization or biogenesis | 1.63E-03 |
| 43 | GO:0010583: response to cyclopentenone | 1.73E-03 |
| 44 | GO:0006796: phosphate-containing compound metabolic process | 1.91E-03 |
| 45 | GO:0006555: methionine metabolic process | 1.91E-03 |
| 46 | GO:0007267: cell-cell signaling | 2.09E-03 |
| 47 | GO:0010014: meristem initiation | 2.30E-03 |
| 48 | GO:0042372: phylloquinone biosynthetic process | 2.30E-03 |
| 49 | GO:0009612: response to mechanical stimulus | 2.30E-03 |
| 50 | GO:0009082: branched-chain amino acid biosynthetic process | 2.30E-03 |
| 51 | GO:0009099: valine biosynthetic process | 2.30E-03 |
| 52 | GO:0009854: oxidative photosynthetic carbon pathway | 2.30E-03 |
| 53 | GO:0009955: adaxial/abaxial pattern specification | 2.30E-03 |
| 54 | GO:0080060: integument development | 2.30E-03 |
| 55 | GO:0006633: fatty acid biosynthetic process | 2.46E-03 |
| 56 | GO:0009645: response to low light intensity stimulus | 2.70E-03 |
| 57 | GO:0009610: response to symbiotic fungus | 2.70E-03 |
| 58 | GO:0009690: cytokinin metabolic process | 3.13E-03 |
| 59 | GO:0045010: actin nucleation | 3.13E-03 |
| 60 | GO:0052543: callose deposition in cell wall | 3.13E-03 |
| 61 | GO:0010119: regulation of stomatal movement | 3.51E-03 |
| 62 | GO:0009097: isoleucine biosynthetic process | 3.58E-03 |
| 63 | GO:0007389: pattern specification process | 3.58E-03 |
| 64 | GO:0009932: cell tip growth | 3.58E-03 |
| 65 | GO:0033384: geranyl diphosphate biosynthetic process | 4.05E-03 |
| 66 | GO:0006754: ATP biosynthetic process | 4.05E-03 |
| 67 | GO:0000902: cell morphogenesis | 4.05E-03 |
| 68 | GO:0045337: farnesyl diphosphate biosynthetic process | 4.05E-03 |
| 69 | GO:0042761: very long-chain fatty acid biosynthetic process | 4.54E-03 |
| 70 | GO:0016573: histone acetylation | 4.54E-03 |
| 71 | GO:0035999: tetrahydrofolate interconversion | 4.54E-03 |
| 72 | GO:0006631: fatty acid metabolic process | 4.56E-03 |
| 73 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 5.05E-03 |
| 74 | GO:0006535: cysteine biosynthetic process from serine | 5.05E-03 |
| 75 | GO:0043069: negative regulation of programmed cell death | 5.05E-03 |
| 76 | GO:0009416: response to light stimulus | 5.23E-03 |
| 77 | GO:0019684: photosynthesis, light reaction | 5.58E-03 |
| 78 | GO:0010072: primary shoot apical meristem specification | 5.58E-03 |
| 79 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.58E-03 |
| 80 | GO:0006790: sulfur compound metabolic process | 6.13E-03 |
| 81 | GO:0030036: actin cytoskeleton organization | 6.70E-03 |
| 82 | GO:0050826: response to freezing | 6.70E-03 |
| 83 | GO:0051603: proteolysis involved in cellular protein catabolic process | 6.90E-03 |
| 84 | GO:0010020: chloroplast fission | 7.28E-03 |
| 85 | GO:0019253: reductive pentose-phosphate cycle | 7.28E-03 |
| 86 | GO:0010167: response to nitrate | 7.89E-03 |
| 87 | GO:0005985: sucrose metabolic process | 7.89E-03 |
| 88 | GO:0046854: phosphatidylinositol phosphorylation | 7.89E-03 |
| 89 | GO:0009825: multidimensional cell growth | 7.89E-03 |
| 90 | GO:0006071: glycerol metabolic process | 8.51E-03 |
| 91 | GO:0006833: water transport | 8.51E-03 |
| 92 | GO:0006338: chromatin remodeling | 9.15E-03 |
| 93 | GO:0009944: polarity specification of adaxial/abaxial axis | 9.15E-03 |
| 94 | GO:0019344: cysteine biosynthetic process | 9.15E-03 |
| 95 | GO:0006468: protein phosphorylation | 9.58E-03 |
| 96 | GO:0007017: microtubule-based process | 9.80E-03 |
| 97 | GO:0010026: trichome differentiation | 9.80E-03 |
| 98 | GO:0009742: brassinosteroid mediated signaling pathway | 1.01E-02 |
| 99 | GO:0006629: lipid metabolic process | 1.04E-02 |
| 100 | GO:0010431: seed maturation | 1.05E-02 |
| 101 | GO:0006730: one-carbon metabolic process | 1.12E-02 |
| 102 | GO:0009814: defense response, incompatible interaction | 1.12E-02 |
| 103 | GO:0006284: base-excision repair | 1.26E-02 |
| 104 | GO:0019722: calcium-mediated signaling | 1.26E-02 |
| 105 | GO:0080022: primary root development | 1.41E-02 |
| 106 | GO:0034220: ion transmembrane transport | 1.41E-02 |
| 107 | GO:0010051: xylem and phloem pattern formation | 1.41E-02 |
| 108 | GO:0000226: microtubule cytoskeleton organization | 1.41E-02 |
| 109 | GO:0010305: leaf vascular tissue pattern formation | 1.49E-02 |
| 110 | GO:0048868: pollen tube development | 1.49E-02 |
| 111 | GO:0008654: phospholipid biosynthetic process | 1.64E-02 |
| 112 | GO:0045490: pectin catabolic process | 1.65E-02 |
| 113 | GO:0048235: pollen sperm cell differentiation | 1.81E-02 |
| 114 | GO:0032502: developmental process | 1.81E-02 |
| 115 | GO:0007264: small GTPase mediated signal transduction | 1.81E-02 |
| 116 | GO:0007166: cell surface receptor signaling pathway | 1.88E-02 |
| 117 | GO:1901657: glycosyl compound metabolic process | 1.89E-02 |
| 118 | GO:0071805: potassium ion transmembrane transport | 2.06E-02 |
| 119 | GO:0009607: response to biotic stimulus | 2.33E-02 |
| 120 | GO:0009627: systemic acquired resistance | 2.42E-02 |
| 121 | GO:0042128: nitrate assimilation | 2.42E-02 |
| 122 | GO:0055114: oxidation-reduction process | 2.58E-02 |
| 123 | GO:0008219: cell death | 2.71E-02 |
| 124 | GO:0055085: transmembrane transport | 2.90E-02 |
| 125 | GO:0046686: response to cadmium ion | 2.94E-02 |
| 126 | GO:0009853: photorespiration | 3.20E-02 |
| 127 | GO:0006839: mitochondrial transport | 3.52E-02 |
| 128 | GO:0032259: methylation | 4.46E-02 |
| 129 | GO:0016042: lipid catabolic process | 4.52E-02 |
| 130 | GO:0006813: potassium ion transport | 4.74E-02 |
| 131 | GO:0006857: oligopeptide transport | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
| 3 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 4 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
| 5 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 6 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
| 7 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 5.38E-05 |
| 8 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.37E-04 |
| 9 | GO:0003838: sterol 24-C-methyltransferase activity | 1.75E-04 |
| 10 | GO:0003984: acetolactate synthase activity | 1.75E-04 |
| 11 | GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity | 1.75E-04 |
| 12 | GO:0030797: 24-methylenesterol C-methyltransferase activity | 1.75E-04 |
| 13 | GO:0080132: fatty acid alpha-hydroxylase activity | 1.75E-04 |
| 14 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.87E-04 |
| 15 | GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity | 3.96E-04 |
| 16 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.96E-04 |
| 17 | GO:0050017: L-3-cyanoalanine synthase activity | 3.96E-04 |
| 18 | GO:0004618: phosphoglycerate kinase activity | 3.96E-04 |
| 19 | GO:0004047: aminomethyltransferase activity | 3.96E-04 |
| 20 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 4.76E-04 |
| 21 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 6.18E-04 |
| 22 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 6.18E-04 |
| 23 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 6.18E-04 |
| 24 | GO:0070330: aromatase activity | 6.47E-04 |
| 25 | GO:0017150: tRNA dihydrouridine synthase activity | 6.47E-04 |
| 26 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 9.23E-04 |
| 27 | GO:0001872: (1->3)-beta-D-glucan binding | 9.23E-04 |
| 28 | GO:0003878: ATP citrate synthase activity | 9.23E-04 |
| 29 | GO:0030570: pectate lyase activity | 9.77E-04 |
| 30 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.22E-03 |
| 31 | GO:0018685: alkane 1-monooxygenase activity | 1.56E-03 |
| 32 | GO:0005471: ATP:ADP antiporter activity | 1.56E-03 |
| 33 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.56E-03 |
| 34 | GO:0008374: O-acyltransferase activity | 1.56E-03 |
| 35 | GO:0009922: fatty acid elongase activity | 1.56E-03 |
| 36 | GO:0016758: transferase activity, transferring hexosyl groups | 1.78E-03 |
| 37 | GO:0016208: AMP binding | 1.91E-03 |
| 38 | GO:0016462: pyrophosphatase activity | 1.91E-03 |
| 39 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.09E-03 |
| 40 | GO:0016413: O-acetyltransferase activity | 2.21E-03 |
| 41 | GO:0004124: cysteine synthase activity | 2.30E-03 |
| 42 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.30E-03 |
| 43 | GO:0004427: inorganic diphosphatase activity | 2.70E-03 |
| 44 | GO:0004564: beta-fructofuranosidase activity | 3.13E-03 |
| 45 | GO:0035064: methylated histone binding | 3.13E-03 |
| 46 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 4.05E-03 |
| 47 | GO:0004337: geranyltranstransferase activity | 4.05E-03 |
| 48 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 4.05E-03 |
| 49 | GO:0004575: sucrose alpha-glucosidase activity | 4.54E-03 |
| 50 | GO:0004185: serine-type carboxypeptidase activity | 4.95E-03 |
| 51 | GO:0004161: dimethylallyltranstransferase activity | 5.58E-03 |
| 52 | GO:0004089: carbonate dehydratase activity | 6.70E-03 |
| 53 | GO:0004565: beta-galactosidase activity | 6.70E-03 |
| 54 | GO:0004672: protein kinase activity | 8.20E-03 |
| 55 | GO:0004674: protein serine/threonine kinase activity | 9.28E-03 |
| 56 | GO:0015079: potassium ion transmembrane transporter activity | 9.80E-03 |
| 57 | GO:0003924: GTPase activity | 1.04E-02 |
| 58 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.05E-02 |
| 59 | GO:0016829: lyase activity | 1.29E-02 |
| 60 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.53E-02 |
| 61 | GO:0019901: protein kinase binding | 1.64E-02 |
| 62 | GO:0051015: actin filament binding | 1.89E-02 |
| 63 | GO:0016759: cellulose synthase activity | 1.98E-02 |
| 64 | GO:0005200: structural constituent of cytoskeleton | 2.06E-02 |
| 65 | GO:0008483: transaminase activity | 2.06E-02 |
| 66 | GO:0042802: identical protein binding | 2.09E-02 |
| 67 | GO:0016597: amino acid binding | 2.15E-02 |
| 68 | GO:0015250: water channel activity | 2.24E-02 |
| 69 | GO:0030247: polysaccharide binding | 2.52E-02 |
| 70 | GO:0102483: scopolin beta-glucosidase activity | 2.52E-02 |
| 71 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.61E-02 |
| 72 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.61E-02 |
| 73 | GO:0016740: transferase activity | 2.76E-02 |
| 74 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.31E-02 |
| 75 | GO:0005507: copper ion binding | 3.35E-02 |
| 76 | GO:0008422: beta-glucosidase activity | 3.41E-02 |
| 77 | GO:0052689: carboxylic ester hydrolase activity | 3.49E-02 |
| 78 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.52E-02 |
| 79 | GO:0042803: protein homodimerization activity | 3.96E-02 |
| 80 | GO:0004871: signal transducer activity | 3.96E-02 |
| 81 | GO:0005525: GTP binding | 4.00E-02 |
| 82 | GO:0005198: structural molecule activity | 4.17E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0031224: intrinsic component of membrane | 0.00E+00 |
| 2 | GO:0005948: acetolactate synthase complex | 0.00E+00 |
| 3 | GO:0009505: plant-type cell wall | 2.63E-07 |
| 4 | GO:0048046: apoplast | 1.01E-06 |
| 5 | GO:0005576: extracellular region | 3.36E-06 |
| 6 | GO:0046658: anchored component of plasma membrane | 9.09E-06 |
| 7 | GO:0009506: plasmodesma | 9.20E-06 |
| 8 | GO:0031225: anchored component of membrane | 2.32E-05 |
| 9 | GO:0000139: Golgi membrane | 1.33E-04 |
| 10 | GO:0009570: chloroplast stroma | 2.98E-04 |
| 11 | GO:0000325: plant-type vacuole | 3.98E-04 |
| 12 | GO:0031519: PcG protein complex | 6.47E-04 |
| 13 | GO:0005618: cell wall | 6.60E-04 |
| 14 | GO:0005886: plasma membrane | 9.18E-04 |
| 15 | GO:0009346: citrate lyase complex | 9.23E-04 |
| 16 | GO:0005775: vacuolar lumen | 9.23E-04 |
| 17 | GO:0010168: ER body | 1.91E-03 |
| 18 | GO:0016020: membrane | 2.01E-03 |
| 19 | GO:0016021: integral component of membrane | 2.34E-03 |
| 20 | GO:0005794: Golgi apparatus | 2.50E-03 |
| 21 | GO:0000123: histone acetyltransferase complex | 2.70E-03 |
| 22 | GO:0005677: chromatin silencing complex | 3.58E-03 |
| 23 | GO:0005773: vacuole | 3.97E-03 |
| 24 | GO:0045298: tubulin complex | 4.05E-03 |
| 25 | GO:0031977: thylakoid lumen | 4.56E-03 |
| 26 | GO:0009579: thylakoid | 6.86E-03 |
| 27 | GO:0030659: cytoplasmic vesicle membrane | 7.28E-03 |
| 28 | GO:0030176: integral component of endoplasmic reticulum membrane | 7.89E-03 |
| 29 | GO:0009941: chloroplast envelope | 8.41E-03 |
| 30 | GO:0005875: microtubule associated complex | 8.51E-03 |
| 31 | GO:0005789: endoplasmic reticulum membrane | 8.78E-03 |
| 32 | GO:0042651: thylakoid membrane | 9.80E-03 |
| 33 | GO:0009532: plastid stroma | 1.05E-02 |
| 34 | GO:0005802: trans-Golgi network | 1.07E-02 |
| 35 | GO:0009543: chloroplast thylakoid lumen | 1.19E-02 |
| 36 | GO:0005774: vacuolar membrane | 1.27E-02 |
| 37 | GO:0005768: endosome | 1.30E-02 |
| 38 | GO:0005778: peroxisomal membrane | 2.06E-02 |
| 39 | GO:0030529: intracellular ribonucleoprotein complex | 2.24E-02 |
| 40 | GO:0009534: chloroplast thylakoid | 2.73E-02 |
| 41 | GO:0005874: microtubule | 3.06E-02 |
| 42 | GO:0000786: nucleosome | 3.10E-02 |
| 43 | GO:0031902: late endosome membrane | 3.62E-02 |
| 44 | GO:0009507: chloroplast | 3.62E-02 |
| 45 | GO:0005743: mitochondrial inner membrane | 4.33E-02 |