Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G11170

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0090393: sepal giant cell development0.00E+00
7GO:0006810: transport3.84E-07
8GO:0015976: carbon utilization1.21E-06
9GO:0009773: photosynthetic electron transport in photosystem I2.63E-06
10GO:0032544: plastid translation2.94E-05
11GO:0015979: photosynthesis3.08E-05
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly6.46E-05
13GO:0009902: chloroplast relocation1.13E-04
14GO:0010037: response to carbon dioxide1.13E-04
15GO:0019464: glycine decarboxylation via glycine cleavage system1.13E-04
16GO:2000122: negative regulation of stomatal complex development1.13E-04
17GO:0006546: glycine catabolic process1.13E-04
18GO:0042742: defense response to bacterium1.99E-04
19GO:0006833: water transport2.14E-04
20GO:0009735: response to cytokinin2.79E-04
21GO:0061077: chaperone-mediated protein folding3.23E-04
22GO:0009658: chloroplast organization3.89E-04
23GO:1904966: positive regulation of vitamin E biosynthetic process4.43E-04
24GO:0071370: cellular response to gibberellin stimulus4.43E-04
25GO:0071277: cellular response to calcium ion4.43E-04
26GO:1904964: positive regulation of phytol biosynthetic process4.43E-04
27GO:0071588: hydrogen peroxide mediated signaling pathway4.43E-04
28GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.43E-04
29GO:0010362: negative regulation of anion channel activity by blue light4.43E-04
30GO:0016117: carotenoid biosynthetic process5.08E-04
31GO:0034220: ion transmembrane transport5.62E-04
32GO:0071555: cell wall organization6.55E-04
33GO:0045454: cell redox homeostasis8.67E-04
34GO:0030388: fructose 1,6-bisphosphate metabolic process9.56E-04
35GO:2000123: positive regulation of stomatal complex development9.56E-04
36GO:0043039: tRNA aminoacylation9.56E-04
37GO:0006695: cholesterol biosynthetic process9.56E-04
38GO:1902326: positive regulation of chlorophyll biosynthetic process9.56E-04
39GO:0015786: UDP-glucose transport9.56E-04
40GO:0007267: cell-cell signaling1.11E-03
41GO:0006415: translational termination1.24E-03
42GO:0018119: peptidyl-cysteine S-nitrosylation1.24E-03
43GO:0019684: photosynthesis, light reaction1.24E-03
44GO:0015840: urea transport1.56E-03
45GO:0071492: cellular response to UV-A1.56E-03
46GO:0006696: ergosterol biosynthetic process1.56E-03
47GO:0015783: GDP-fucose transport1.56E-03
48GO:0090506: axillary shoot meristem initiation1.56E-03
49GO:0006000: fructose metabolic process1.56E-03
50GO:0006518: peptide metabolic process1.56E-03
51GO:0010411: xyloglucan metabolic process1.58E-03
52GO:0009767: photosynthetic electron transport chain1.61E-03
53GO:0042254: ribosome biogenesis1.72E-03
54GO:0018298: protein-chromophore linkage1.80E-03
55GO:0010020: chloroplast fission1.81E-03
56GO:0000160: phosphorelay signal transduction system1.92E-03
57GO:0055085: transmembrane transport2.07E-03
58GO:0043572: plastid fission2.25E-03
59GO:0032877: positive regulation of DNA endoreduplication2.25E-03
60GO:0007231: osmosensory signaling pathway2.25E-03
61GO:0006241: CTP biosynthetic process2.25E-03
62GO:0072334: UDP-galactose transmembrane transport2.25E-03
63GO:0080170: hydrogen peroxide transmembrane transport2.25E-03
64GO:0006165: nucleoside diphosphate phosphorylation2.25E-03
65GO:0006228: UTP biosynthetic process2.25E-03
66GO:0006749: glutathione metabolic process3.03E-03
67GO:0006542: glutamine biosynthetic process3.03E-03
68GO:0019676: ammonia assimilation cycle3.03E-03
69GO:0071486: cellular response to high light intensity3.03E-03
70GO:0009765: photosynthesis, light harvesting3.03E-03
71GO:0006183: GTP biosynthetic process3.03E-03
72GO:0045727: positive regulation of translation3.03E-03
73GO:0033500: carbohydrate homeostasis3.03E-03
74GO:2000038: regulation of stomatal complex development3.03E-03
75GO:0045490: pectin catabolic process3.53E-03
76GO:0007623: circadian rhythm3.53E-03
77GO:0042546: cell wall biogenesis3.54E-03
78GO:0006656: phosphatidylcholine biosynthetic process3.88E-03
79GO:0016123: xanthophyll biosynthetic process3.88E-03
80GO:0010375: stomatal complex patterning3.88E-03
81GO:0046785: microtubule polymerization3.88E-03
82GO:0016120: carotene biosynthetic process3.88E-03
83GO:0019722: calcium-mediated signaling3.97E-03
84GO:0000413: protein peptidyl-prolyl isomerization4.65E-03
85GO:0010087: phloem or xylem histogenesis4.65E-03
86GO:0016554: cytidine to uridine editing4.80E-03
87GO:0010190: cytochrome b6f complex assembly4.80E-03
88GO:1901259: chloroplast rRNA processing5.79E-03
89GO:0010019: chloroplast-nucleus signaling pathway5.79E-03
90GO:0010555: response to mannitol5.79E-03
91GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity5.79E-03
92GO:0009955: adaxial/abaxial pattern specification5.79E-03
93GO:0030643: cellular phosphate ion homeostasis5.79E-03
94GO:0042372: phylloquinone biosynthetic process5.79E-03
95GO:0045926: negative regulation of growth5.79E-03
96GO:0010067: procambium histogenesis5.79E-03
97GO:0009612: response to mechanical stimulus5.79E-03
98GO:0042026: protein refolding5.79E-03
99GO:0006458: 'de novo' protein folding5.79E-03
100GO:0071554: cell wall organization or biogenesis6.19E-03
101GO:0009645: response to low light intensity stimulus6.85E-03
102GO:0042545: cell wall modification7.45E-03
103GO:0009704: de-etiolation7.97E-03
104GO:0030091: protein repair7.97E-03
105GO:0009642: response to light intensity7.97E-03
106GO:0017004: cytochrome complex assembly9.15E-03
107GO:0009932: cell tip growth9.15E-03
108GO:0006002: fructose 6-phosphate metabolic process9.15E-03
109GO:0009657: plastid organization9.15E-03
110GO:0006754: ATP biosynthetic process1.04E-02
111GO:0010206: photosystem II repair1.04E-02
112GO:0045337: farnesyl diphosphate biosynthetic process1.04E-02
113GO:0090333: regulation of stomatal closure1.04E-02
114GO:0033384: geranyl diphosphate biosynthetic process1.04E-02
115GO:0009638: phototropism1.17E-02
116GO:1900865: chloroplast RNA modification1.17E-02
117GO:0009817: defense response to fungus, incompatible interaction1.18E-02
118GO:0043069: negative regulation of programmed cell death1.30E-02
119GO:0009407: toxin catabolic process1.30E-02
120GO:0009870: defense response signaling pathway, resistance gene-dependent1.30E-02
121GO:0010119: regulation of stomatal movement1.36E-02
122GO:0006869: lipid transport1.44E-02
123GO:0000272: polysaccharide catabolic process1.45E-02
124GO:0006816: calcium ion transport1.45E-02
125GO:0009089: lysine biosynthetic process via diaminopimelate1.45E-02
126GO:0043085: positive regulation of catalytic activity1.45E-02
127GO:0016051: carbohydrate biosynthetic process1.49E-02
128GO:0009637: response to blue light1.49E-02
129GO:0034599: cellular response to oxidative stress1.56E-02
130GO:0050826: response to freezing1.74E-02
131GO:0009725: response to hormone1.74E-02
132GO:0006094: gluconeogenesis1.74E-02
133GO:0005986: sucrose biosynthetic process1.74E-02
134GO:0019253: reductive pentose-phosphate cycle1.90E-02
135GO:0010223: secondary shoot formation1.90E-02
136GO:0048768: root hair cell tip growth1.90E-02
137GO:0010143: cutin biosynthetic process1.90E-02
138GO:0010207: photosystem II assembly1.90E-02
139GO:0006412: translation1.95E-02
140GO:0070588: calcium ion transmembrane transport2.06E-02
141GO:0005985: sucrose metabolic process2.06E-02
142GO:0009636: response to toxic substance2.17E-02
143GO:0009833: plant-type primary cell wall biogenesis2.23E-02
144GO:0006071: glycerol metabolic process2.23E-02
145GO:0019344: cysteine biosynthetic process2.40E-02
146GO:0000027: ribosomal large subunit assembly2.40E-02
147GO:0009768: photosynthesis, light harvesting in photosystem I2.57E-02
148GO:0006418: tRNA aminoacylation for protein translation2.57E-02
149GO:0007017: microtubule-based process2.57E-02
150GO:0009736: cytokinin-activated signaling pathway2.61E-02
151GO:0080092: regulation of pollen tube growth2.93E-02
152GO:0019748: secondary metabolic process2.93E-02
153GO:0001944: vasculature development3.12E-02
154GO:0009294: DNA mediated transformation3.12E-02
155GO:0010089: xylem development3.31E-02
156GO:0006284: base-excision repair3.31E-02
157GO:0005975: carbohydrate metabolic process3.53E-02
158GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.68E-02
159GO:0000271: polysaccharide biosynthetic process3.71E-02
160GO:0080022: primary root development3.71E-02
161GO:0010118: stomatal movement3.71E-02
162GO:0042631: cellular response to water deprivation3.71E-02
163GO:0042335: cuticle development3.71E-02
164GO:0046777: protein autophosphorylation3.83E-02
165GO:0010305: leaf vascular tissue pattern formation3.91E-02
166GO:0006662: glycerol ether metabolic process3.91E-02
167GO:0009741: response to brassinosteroid3.91E-02
168GO:0045489: pectin biosynthetic process3.91E-02
169GO:0009742: brassinosteroid mediated signaling pathway3.93E-02
170GO:0019252: starch biosynthetic process4.33E-02
171GO:0000302: response to reactive oxygen species4.54E-02
172GO:0002229: defense response to oomycetes4.54E-02
173GO:0007264: small GTPase mediated signal transduction4.76E-02
174GO:0010583: response to cyclopentenone4.76E-02
175GO:0010090: trichome morphogenesis4.98E-02
176GO:1901657: glycosyl compound metabolic process4.98E-02
RankGO TermAdjusted P value
1GO:0046905: phytoene synthase activity0.00E+00
2GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
3GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
4GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
5GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
6GO:0050613: delta14-sterol reductase activity0.00E+00
7GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0051920: peroxiredoxin activity8.86E-08
10GO:0016209: antioxidant activity3.12E-07
11GO:0019843: rRNA binding5.37E-07
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.45E-06
13GO:0005528: FK506 binding1.34E-05
14GO:0004375: glycine dehydrogenase (decarboxylating) activity6.46E-05
15GO:0016149: translation release factor activity, codon specific6.46E-05
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.13E-04
17GO:0004089: carbonate dehydratase activity1.29E-04
18GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.33E-04
19GO:0051996: squalene synthase activity4.43E-04
20GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.43E-04
21GO:0080132: fatty acid alpha-hydroxylase activity4.43E-04
22GO:0004831: tyrosine-tRNA ligase activity4.43E-04
23GO:0003747: translation release factor activity7.84E-04
24GO:0016762: xyloglucan:xyloglucosyl transferase activity8.08E-04
25GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.56E-04
26GO:0000234: phosphoethanolamine N-methyltransferase activity9.56E-04
27GO:0008967: phosphoglycolate phosphatase activity9.56E-04
28GO:0010297: heteropolysaccharide binding9.56E-04
29GO:0004047: aminomethyltransferase activity9.56E-04
30GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.56E-04
31GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase9.56E-04
32GO:0015250: water channel activity1.28E-03
33GO:0016168: chlorophyll binding1.38E-03
34GO:0030599: pectinesterase activity1.39E-03
35GO:0003735: structural constituent of ribosome1.46E-03
36GO:0005457: GDP-fucose transmembrane transporter activity1.56E-03
37GO:0050734: hydroxycinnamoyltransferase activity1.56E-03
38GO:0004148: dihydrolipoyl dehydrogenase activity1.56E-03
39GO:0016798: hydrolase activity, acting on glycosyl bonds1.58E-03
40GO:0005460: UDP-glucose transmembrane transporter activity2.25E-03
41GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.25E-03
42GO:0004550: nucleoside diphosphate kinase activity2.25E-03
43GO:0009882: blue light photoreceptor activity2.25E-03
44GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.26E-03
45GO:0015204: urea transmembrane transporter activity3.03E-03
46GO:0004659: prenyltransferase activity3.03E-03
47GO:0043495: protein anchor3.03E-03
48GO:0022891: substrate-specific transmembrane transporter activity3.65E-03
49GO:0004356: glutamate-ammonia ligase activity3.88E-03
50GO:0008725: DNA-3-methyladenine glycosylase activity3.88E-03
51GO:0005459: UDP-galactose transmembrane transporter activity3.88E-03
52GO:0042578: phosphoric ester hydrolase activity4.80E-03
53GO:0016688: L-ascorbate peroxidase activity4.80E-03
54GO:0008200: ion channel inhibitor activity4.80E-03
55GO:0080030: methyl indole-3-acetate esterase activity4.80E-03
56GO:0004130: cytochrome-c peroxidase activity4.80E-03
57GO:0016208: AMP binding4.80E-03
58GO:0005509: calcium ion binding4.81E-03
59GO:0042802: identical protein binding5.09E-03
60GO:0045330: aspartyl esterase activity5.62E-03
61GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.79E-03
62GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.79E-03
63GO:0051753: mannan synthase activity5.79E-03
64GO:0019901: protein kinase binding5.79E-03
65GO:0048038: quinone binding6.19E-03
66GO:0019899: enzyme binding6.85E-03
67GO:0004601: peroxidase activity6.87E-03
68GO:0000156: phosphorelay response regulator activity7.06E-03
69GO:0016759: cellulose synthase activity7.52E-03
70GO:0004564: beta-fructofuranosidase activity7.97E-03
71GO:0016722: oxidoreductase activity, oxidizing metal ions7.99E-03
72GO:0016413: O-acetyltransferase activity8.48E-03
73GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism1.04E-02
74GO:0004337: geranyltranstransferase activity1.04E-02
75GO:0008889: glycerophosphodiester phosphodiesterase activity1.04E-02
76GO:0004575: sucrose alpha-glucosidase activity1.17E-02
77GO:0008047: enzyme activator activity1.30E-02
78GO:0004222: metalloendopeptidase activity1.30E-02
79GO:0044183: protein binding involved in protein folding1.45E-02
80GO:0004161: dimethylallyltranstransferase activity1.45E-02
81GO:0005089: Rho guanyl-nucleotide exchange factor activity1.45E-02
82GO:0004860: protein kinase inhibitor activity1.45E-02
83GO:0031072: heat shock protein binding1.74E-02
84GO:0000155: phosphorelay sensor kinase activity1.74E-02
85GO:0005262: calcium channel activity1.74E-02
86GO:0004364: glutathione transferase activity1.85E-02
87GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.90E-02
88GO:0008083: growth factor activity1.90E-02
89GO:0004185: serine-type carboxypeptidase activity1.93E-02
90GO:0031409: pigment binding2.23E-02
91GO:0004857: enzyme inhibitor activity2.40E-02
92GO:0043424: protein histidine kinase binding2.57E-02
93GO:0004176: ATP-dependent peptidase activity2.75E-02
94GO:0033612: receptor serine/threonine kinase binding2.75E-02
95GO:0008289: lipid binding2.81E-02
96GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.93E-02
97GO:0030570: pectate lyase activity3.12E-02
98GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.18E-02
99GO:0008514: organic anion transmembrane transporter activity3.31E-02
100GO:0004650: polygalacturonase activity3.39E-02
101GO:0022857: transmembrane transporter activity3.49E-02
102GO:0047134: protein-disulfide reductase activity3.51E-02
103GO:0004812: aminoacyl-tRNA ligase activity3.51E-02
104GO:0005102: receptor binding3.51E-02
105GO:0051082: unfolded protein binding3.71E-02
106GO:0004791: thioredoxin-disulfide reductase activity4.12E-02
107GO:0050662: coenzyme binding4.12E-02
108GO:0010181: FMN binding4.12E-02
109GO:0004872: receptor activity4.33E-02
110GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.98E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009507: chloroplast1.94E-34
3GO:0009535: chloroplast thylakoid membrane2.08E-27
4GO:0009543: chloroplast thylakoid lumen1.98E-16
5GO:0009579: thylakoid2.73E-16
6GO:0009941: chloroplast envelope1.71E-14
7GO:0009570: chloroplast stroma2.07E-14
8GO:0048046: apoplast3.83E-13
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.01E-08
10GO:0031977: thylakoid lumen1.08E-08
11GO:0009654: photosystem II oxygen evolving complex1.10E-08
12GO:0031225: anchored component of membrane5.07E-08
13GO:0009534: chloroplast thylakoid9.24E-08
14GO:0019898: extrinsic component of membrane3.95E-06
15GO:0046658: anchored component of plasma membrane5.33E-06
16GO:0030095: chloroplast photosystem II6.48E-06
17GO:0009505: plant-type cell wall2.78E-05
18GO:0005960: glycine cleavage complex6.46E-05
19GO:0010319: stromule1.33E-04
20GO:0042651: thylakoid membrane2.84E-04
21GO:0005840: ribosome7.42E-04
22GO:0000427: plastid-encoded plastid RNA polymerase complex9.56E-04
23GO:0000311: plastid large ribosomal subunit1.41E-03
24GO:0005618: cell wall1.72E-03
25GO:0010287: plastoglobule1.98E-03
26GO:0015934: large ribosomal subunit2.17E-03
27GO:0005775: vacuolar lumen2.25E-03
28GO:0031969: chloroplast membrane2.44E-03
29GO:0016020: membrane5.41E-03
30GO:0009523: photosystem II5.79E-03
31GO:0009533: chloroplast stromal thylakoid6.85E-03
32GO:0042807: central vacuole6.85E-03
33GO:0000326: protein storage vacuole9.15E-03
34GO:0009539: photosystem II reaction center9.15E-03
35GO:0045298: tubulin complex1.04E-02
36GO:0005763: mitochondrial small ribosomal subunit1.04E-02
37GO:0005576: extracellular region1.14E-02
38GO:0022626: cytosolic ribosome1.22E-02
39GO:0055028: cortical microtubule1.30E-02
40GO:0016324: apical plasma membrane1.30E-02
41GO:0016021: integral component of membrane1.32E-02
42GO:0031012: extracellular matrix1.74E-02
43GO:0030076: light-harvesting complex2.06E-02
44GO:0030176: integral component of endoplasmic reticulum membrane2.06E-02
45GO:0005875: microtubule associated complex2.23E-02
46GO:0005886: plasma membrane2.33E-02
47GO:0005758: mitochondrial intermembrane space2.40E-02
48GO:0005887: integral component of plasma membrane2.71E-02
49GO:0009532: plastid stroma2.75E-02
50GO:0000139: Golgi membrane2.86E-02
51GO:0005874: microtubule3.38E-02
52GO:0009706: chloroplast inner membrane3.71E-02
53GO:0009522: photosystem I4.12E-02
Gene type



Gene DE type