Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G10840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0035998: 7,8-dihydroneopterin 3'-triphosphate biosynthetic process0.00E+00
2GO:0051503: adenine nucleotide transport0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
5GO:0006573: valine metabolic process0.00E+00
6GO:0051881: regulation of mitochondrial membrane potential0.00E+00
7GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
8GO:0015822: ornithine transport0.00E+00
9GO:0016048: detection of temperature stimulus0.00E+00
10GO:0019253: reductive pentose-phosphate cycle1.42E-08
11GO:0010275: NAD(P)H dehydrogenase complex assembly2.86E-06
12GO:0006546: glycine catabolic process4.26E-05
13GO:0019464: glycine decarboxylation via glycine cleavage system4.26E-05
14GO:0016117: carotenoid biosynthetic process1.63E-04
15GO:0005978: glycogen biosynthetic process2.28E-04
16GO:0019252: starch biosynthetic process2.47E-04
17GO:1901349: glucosinolate transport2.48E-04
18GO:0090449: phloem glucosinolate loading2.48E-04
19GO:0003002: regionalization2.48E-04
20GO:0006659: phosphatidylserine biosynthetic process2.48E-04
21GO:0006551: leucine metabolic process2.48E-04
22GO:0000066: mitochondrial ornithine transport2.48E-04
23GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.48E-04
24GO:0006096: glycolytic process3.10E-04
25GO:0000272: polysaccharide catabolic process5.47E-04
26GO:0018119: peptidyl-cysteine S-nitrosylation5.47E-04
27GO:1902326: positive regulation of chlorophyll biosynthetic process5.49E-04
28GO:0019388: galactose catabolic process5.49E-04
29GO:1904143: positive regulation of carotenoid biosynthetic process5.49E-04
30GO:0006729: tetrahydrobiopterin biosynthetic process5.49E-04
31GO:0030388: fructose 1,6-bisphosphate metabolic process5.49E-04
32GO:2000123: positive regulation of stomatal complex development5.49E-04
33GO:0010270: photosystem II oxygen evolving complex assembly5.49E-04
34GO:0043039: tRNA aminoacylation5.49E-04
35GO:0006810: transport6.19E-04
36GO:0006006: glucose metabolic process7.09E-04
37GO:0009767: photosynthetic electron transport chain7.09E-04
38GO:0006000: fructose metabolic process8.92E-04
39GO:0006696: ergosterol biosynthetic process8.92E-04
40GO:0042343: indole glucosinolate metabolic process8.92E-04
41GO:2000082: regulation of L-ascorbic acid biosynthetic process8.92E-04
42GO:0009052: pentose-phosphate shunt, non-oxidative branch1.27E-03
43GO:0033014: tetrapyrrole biosynthetic process1.27E-03
44GO:0009590: detection of gravity1.27E-03
45GO:2001141: regulation of RNA biosynthetic process1.27E-03
46GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.27E-03
47GO:0010239: chloroplast mRNA processing1.27E-03
48GO:0046902: regulation of mitochondrial membrane permeability1.27E-03
49GO:0098542: defense response to other organism1.32E-03
50GO:2000038: regulation of stomatal complex development1.70E-03
51GO:0006021: inositol biosynthetic process1.70E-03
52GO:0009902: chloroplast relocation1.70E-03
53GO:0006542: glutamine biosynthetic process1.70E-03
54GO:0006479: protein methylation1.70E-03
55GO:0019676: ammonia assimilation cycle1.70E-03
56GO:0009765: photosynthesis, light harvesting1.70E-03
57GO:0045727: positive regulation of translation1.70E-03
58GO:0045489: pectin biosynthetic process2.15E-03
59GO:0006342: chromatin silencing2.15E-03
60GO:0010236: plastoquinone biosynthetic process2.17E-03
61GO:1902183: regulation of shoot apical meristem development2.17E-03
62GO:0016123: xanthophyll biosynthetic process2.17E-03
63GO:0010375: stomatal complex patterning2.17E-03
64GO:0046686: response to cadmium ion2.29E-03
65GO:0009735: response to cytokinin2.50E-03
66GO:0009643: photosynthetic acclimation2.67E-03
67GO:0010304: PSII associated light-harvesting complex II catabolic process2.67E-03
68GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.67E-03
69GO:0070814: hydrogen sulfide biosynthetic process2.67E-03
70GO:0009082: branched-chain amino acid biosynthetic process3.21E-03
71GO:1901259: chloroplast rRNA processing3.21E-03
72GO:0017148: negative regulation of translation3.21E-03
73GO:0046654: tetrahydrofolate biosynthetic process3.21E-03
74GO:0009099: valine biosynthetic process3.21E-03
75GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.21E-03
76GO:0010439: regulation of glucosinolate biosynthetic process4.39E-03
77GO:0000105: histidine biosynthetic process4.39E-03
78GO:0052543: callose deposition in cell wall4.39E-03
79GO:0007155: cell adhesion4.39E-03
80GO:0008610: lipid biosynthetic process4.39E-03
81GO:0018298: protein-chromophore linkage4.97E-03
82GO:0048193: Golgi vesicle transport5.03E-03
83GO:0009657: plastid organization5.03E-03
84GO:0009097: isoleucine biosynthetic process5.03E-03
85GO:0032544: plastid translation5.03E-03
86GO:0044030: regulation of DNA methylation5.03E-03
87GO:0006002: fructose 6-phosphate metabolic process5.03E-03
88GO:0071482: cellular response to light stimulus5.03E-03
89GO:0022900: electron transport chain5.03E-03
90GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.03E-03
91GO:2000024: regulation of leaf development5.70E-03
92GO:0006783: heme biosynthetic process5.70E-03
93GO:0006754: ATP biosynthetic process5.70E-03
94GO:0048589: developmental growth5.70E-03
95GO:0009056: catabolic process5.70E-03
96GO:0016051: carbohydrate biosynthetic process6.30E-03
97GO:0006779: porphyrin-containing compound biosynthetic process6.40E-03
98GO:0005975: carbohydrate metabolic process6.80E-03
99GO:0009970: cellular response to sulfate starvation7.12E-03
100GO:0006535: cysteine biosynthetic process from serine7.12E-03
101GO:0000103: sulfate assimilation7.12E-03
102GO:0051555: flavonol biosynthetic process7.12E-03
103GO:0006839: mitochondrial transport7.18E-03
104GO:0009773: photosynthetic electron transport in photosystem I7.88E-03
105GO:0019684: photosynthesis, light reaction7.88E-03
106GO:0006415: translational termination7.88E-03
107GO:0006352: DNA-templated transcription, initiation7.88E-03
108GO:0048229: gametophyte development7.88E-03
109GO:0009744: response to sucrose8.13E-03
110GO:0006094: gluconeogenesis9.47E-03
111GO:0005986: sucrose biosynthetic process9.47E-03
112GO:0010207: photosystem II assembly1.03E-02
113GO:0010020: chloroplast fission1.03E-02
114GO:0009416: response to light stimulus1.11E-02
115GO:0080167: response to karrikin1.20E-02
116GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.25E-02
117GO:0009944: polarity specification of adaxial/abaxial axis1.30E-02
118GO:0007010: cytoskeleton organization1.30E-02
119GO:0019344: cysteine biosynthetic process1.30E-02
120GO:0006418: tRNA aminoacylation for protein translation1.39E-02
121GO:0009768: photosynthesis, light harvesting in photosystem I1.39E-02
122GO:0006730: one-carbon metabolic process1.59E-02
123GO:0080092: regulation of pollen tube growth1.59E-02
124GO:0040007: growth1.69E-02
125GO:0009409: response to cold1.69E-02
126GO:0009625: response to insect1.69E-02
127GO:0006284: base-excision repair1.79E-02
128GO:0000271: polysaccharide biosynthetic process2.01E-02
129GO:0042631: cellular response to water deprivation2.01E-02
130GO:0008360: regulation of cell shape2.12E-02
131GO:0009741: response to brassinosteroid2.12E-02
132GO:0007059: chromosome segregation2.23E-02
133GO:0009646: response to absence of light2.23E-02
134GO:0009791: post-embryonic development2.34E-02
135GO:0008654: phospholipid biosynthetic process2.34E-02
136GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.46E-02
137GO:0032502: developmental process2.58E-02
138GO:0007264: small GTPase mediated signal transduction2.58E-02
139GO:0007623: circadian rhythm2.71E-02
140GO:0016125: sterol metabolic process2.82E-02
141GO:0007267: cell-cell signaling2.94E-02
142GO:0051607: defense response to virus3.07E-02
143GO:0042742: defense response to bacterium3.19E-02
144GO:0016126: sterol biosynthetic process3.19E-02
145GO:0010468: regulation of gene expression3.24E-02
146GO:0048573: photoperiodism, flowering3.59E-02
147GO:0009817: defense response to fungus, incompatible interaction3.86E-02
148GO:0048767: root hair elongation4.00E-02
149GO:0009611: response to wounding4.11E-02
150GO:0009407: toxin catabolic process4.14E-02
151GO:0010218: response to far red light4.14E-02
152GO:0009793: embryo development ending in seed dormancy4.14E-02
153GO:0009658: chloroplast organization4.19E-02
154GO:0007568: aging4.28E-02
155GO:0009637: response to blue light4.56E-02
156GO:0009853: photorespiration4.56E-02
157GO:0034599: cellular response to oxidative stress4.71E-02
RankGO TermAdjusted P value
1GO:0003934: GTP cyclohydrolase I activity0.00E+00
2GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
3GO:0050613: delta14-sterol reductase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
6GO:0046905: phytoene synthase activity0.00E+00
7GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
8GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
9GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
10GO:0004618: phosphoglycerate kinase activity2.86E-06
11GO:0004375: glycine dehydrogenase (decarboxylating) activity2.34E-05
12GO:0031072: heat shock protein binding3.56E-05
13GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.37E-04
14GO:0004831: tyrosine-tRNA ligase activity2.48E-04
15GO:0004325: ferrochelatase activity2.48E-04
16GO:0051996: squalene synthase activity2.48E-04
17GO:0003984: acetolactate synthase activity2.48E-04
18GO:0010313: phytochrome binding2.48E-04
19GO:0090448: glucosinolate:proton symporter activity2.48E-04
20GO:0004400: histidinol-phosphate transaminase activity2.48E-04
21GO:0000064: L-ornithine transmembrane transporter activity5.49E-04
22GO:0004614: phosphoglucomutase activity5.49E-04
23GO:0004512: inositol-3-phosphate synthase activity5.49E-04
24GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.49E-04
25GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.49E-04
26GO:0050017: L-3-cyanoalanine synthase activity5.49E-04
27GO:0010291: carotene beta-ring hydroxylase activity5.49E-04
28GO:0016868: intramolecular transferase activity, phosphotransferases5.49E-04
29GO:0010297: heteropolysaccharide binding5.49E-04
30GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.49E-04
31GO:0004047: aminomethyltransferase activity5.49E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.49E-04
33GO:0003913: DNA photolyase activity8.92E-04
34GO:0004148: dihydrolipoyl dehydrogenase activity8.92E-04
35GO:0004751: ribose-5-phosphate isomerase activity8.92E-04
36GO:0030267: glyoxylate reductase (NADP) activity8.92E-04
37GO:0004781: sulfate adenylyltransferase (ATP) activity8.92E-04
38GO:0005528: FK506 binding1.09E-03
39GO:0016149: translation release factor activity, codon specific1.27E-03
40GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.27E-03
41GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.27E-03
42GO:0001872: (1->3)-beta-D-glucan binding1.27E-03
43GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.27E-03
44GO:0008276: protein methyltransferase activity1.27E-03
45GO:0048027: mRNA 5'-UTR binding1.27E-03
46GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.70E-03
47GO:0008878: glucose-1-phosphate adenylyltransferase activity1.70E-03
48GO:0001053: plastid sigma factor activity1.70E-03
49GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.70E-03
50GO:0016987: sigma factor activity1.70E-03
51GO:0005471: ATP:ADP antiporter activity2.17E-03
52GO:0004356: glutamate-ammonia ligase activity2.17E-03
53GO:0008725: DNA-3-methyladenine glycosylase activity2.17E-03
54GO:0008374: O-acyltransferase activity2.17E-03
55GO:0019901: protein kinase binding2.47E-03
56GO:0051082: unfolded protein binding2.60E-03
57GO:0102229: amylopectin maltohydrolase activity2.67E-03
58GO:0042578: phosphoric ester hydrolase activity2.67E-03
59GO:0080030: methyl indole-3-acetate esterase activity2.67E-03
60GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.21E-03
61GO:0016161: beta-amylase activity3.21E-03
62GO:0004124: cysteine synthase activity3.21E-03
63GO:0019843: rRNA binding3.46E-03
64GO:0016597: amino acid binding3.60E-03
65GO:0009881: photoreceptor activity3.79E-03
66GO:0043295: glutathione binding3.79E-03
67GO:0004033: aldo-keto reductase (NADP) activity4.39E-03
68GO:0004714: transmembrane receptor protein tyrosine kinase activity4.39E-03
69GO:0003843: 1,3-beta-D-glucan synthase activity5.03E-03
70GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.70E-03
71GO:0003747: translation release factor activity5.70E-03
72GO:0005089: Rho guanyl-nucleotide exchange factor activity7.88E-03
73GO:0016788: hydrolase activity, acting on ester bonds9.31E-03
74GO:0004565: beta-galactosidase activity9.47E-03
75GO:0008081: phosphoric diester hydrolase activity9.47E-03
76GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.49E-03
77GO:0051287: NAD binding9.85E-03
78GO:0004175: endopeptidase activity1.03E-02
79GO:0031409: pigment binding1.21E-02
80GO:0016787: hydrolase activity1.33E-02
81GO:0052689: carboxylic ester hydrolase activity1.36E-02
82GO:0022857: transmembrane transporter activity1.47E-02
83GO:0004176: ATP-dependent peptidase activity1.49E-02
84GO:0016740: transferase activity1.50E-02
85GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.59E-02
86GO:0003756: protein disulfide isomerase activity1.79E-02
87GO:0019825: oxygen binding1.90E-02
88GO:0004812: aminoacyl-tRNA ligase activity1.90E-02
89GO:0016758: transferase activity, transferring hexosyl groups1.91E-02
90GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.02E-02
91GO:0050662: coenzyme binding2.23E-02
92GO:0016853: isomerase activity2.23E-02
93GO:0048038: quinone binding2.46E-02
94GO:0004518: nuclease activity2.58E-02
95GO:0008483: transaminase activity2.94E-02
96GO:0008237: metallopeptidase activity2.94E-02
97GO:0005200: structural constituent of cytoskeleton2.94E-02
98GO:0008194: UDP-glycosyltransferase activity3.03E-02
99GO:0005506: iron ion binding3.11E-02
100GO:0016757: transferase activity, transferring glycosyl groups3.17E-02
101GO:0016168: chlorophyll binding3.32E-02
102GO:0030247: polysaccharide binding3.59E-02
103GO:0003824: catalytic activity3.65E-02
104GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding3.72E-02
105GO:0046982: protein heterodimerization activity4.11E-02
106GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.14E-02
107GO:0004222: metalloendopeptidase activity4.14E-02
108GO:0050897: cobalt ion binding4.28E-02
109GO:0046872: metal ion binding4.65E-02
110GO:0000987: core promoter proximal region sequence-specific DNA binding4.71E-02
RankGO TermAdjusted P value
1GO:0030931: heterotetrameric ADPG pyrophosphorylase complex0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0005948: acetolactate synthase complex0.00E+00
4GO:0009571: proplastid stroma0.00E+00
5GO:0009507: chloroplast3.14E-19
6GO:0009570: chloroplast stroma1.08E-13
7GO:0009535: chloroplast thylakoid membrane2.80E-10
8GO:0009941: chloroplast envelope1.28E-09
9GO:0010319: stromule1.02E-06
10GO:0009543: chloroplast thylakoid lumen6.65E-06
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.99E-06
12GO:0005960: glycine cleavage complex2.34E-05
13GO:0009579: thylakoid4.98E-05
14GO:0048046: apoplast2.29E-04
15GO:0031969: chloroplast membrane5.39E-04
16GO:0000427: plastid-encoded plastid RNA polymerase complex5.49E-04
17GO:0045254: pyruvate dehydrogenase complex5.49E-04
18GO:0030095: chloroplast photosystem II7.98E-04
19GO:0009534: chloroplast thylakoid1.08E-03
20GO:0009654: photosystem II oxygen evolving complex1.20E-03
21GO:0000790: nuclear chromatin1.84E-03
22GO:0055035: plastid thylakoid membrane2.17E-03
23GO:0019898: extrinsic component of membrane2.47E-03
24GO:0010287: plastoglobule3.23E-03
25GO:0005743: mitochondrial inner membrane4.18E-03
26GO:0009707: chloroplast outer membrane4.97E-03
27GO:0000148: 1,3-beta-D-glucan synthase complex5.03E-03
28GO:0000786: nucleosome6.02E-03
29GO:0016324: apical plasma membrane7.12E-03
30GO:0031977: thylakoid lumen7.49E-03
31GO:0005765: lysosomal membrane7.88E-03
32GO:0005856: cytoskeleton9.14E-03
33GO:0009508: plastid chromosome9.47E-03
34GO:0030176: integral component of endoplasmic reticulum membrane1.12E-02
35GO:0030076: light-harvesting complex1.12E-02
36GO:0009522: photosystem I2.23E-02
37GO:0009523: photosystem II2.34E-02
38GO:0005759: mitochondrial matrix2.47E-02
39GO:0009295: nucleoid2.94E-02
40GO:0005778: peroxisomal membrane2.94E-02
41GO:0009536: plastid4.28E-02
42GO:0005819: spindle4.86E-02
Gene type



Gene DE type