co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G10060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000505: regulation of energy homeostasis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0061635: regulation of protein complex stability	0.00E+00
7	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
8	GO:0042493: response to drug	0.00E+00
9	GO:0015979: photosynthesis	1.15E-12
10	GO:0009773: photosynthetic electron transport in photosystem I	1.73E-10
11	GO:0010027: thylakoid membrane organization	5.42E-09
12	GO:0032544: plastid translation	2.31E-07
13	GO:0010196: nonphotochemical quenching	7.56E-06
14	GO:0009735: response to cytokinin	1.69E-05
15	GO:0090391: granum assembly	1.92E-05
16	GO:0016024: CDP-diacylglycerol biosynthetic process	6.18E-05
17	GO:0015995: chlorophyll biosynthetic process	1.16E-04
18	GO:0006655: phosphatidylglycerol biosynthetic process	1.70E-04
19	GO:1901259: chloroplast rRNA processing	2.30E-04
20	GO:0009306: protein secretion	2.85E-04
21	GO:0009772: photosynthetic electron transport in photosystem II	2.99E-04
22	GO:1902458: positive regulation of stomatal opening	3.47E-04
23	GO:0034337: RNA folding	3.47E-04
24	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	3.47E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	3.47E-04
26	GO:1904966: positive regulation of vitamin E biosynthetic process	3.47E-04
27	GO:1904964: positive regulation of phytol biosynthetic process	3.47E-04
28	GO:0042759: long-chain fatty acid biosynthetic process	3.47E-04
29	GO:0080051: cutin transport	3.47E-04
30	GO:0042371: vitamin K biosynthetic process	3.47E-04
31	GO:0010206: photosystem II repair	5.52E-04
32	GO:0010205: photoinhibition	6.53E-04
33	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.56E-04
34	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.56E-04
35	GO:0010024: phytochromobilin biosynthetic process	7.56E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.56E-04
37	GO:0043255: regulation of carbohydrate biosynthetic process	7.56E-04
38	GO:0015908: fatty acid transport	7.56E-04
39	GO:0010115: regulation of abscisic acid biosynthetic process	7.56E-04
40	GO:0034755: iron ion transmembrane transport	7.56E-04
41	GO:0001736: establishment of planar polarity	7.56E-04
42	GO:0009750: response to fructose	8.76E-04
43	GO:0042254: ribosome biogenesis	9.10E-04
44	GO:0006000: fructose metabolic process	1.22E-03
45	GO:0006788: heme oxidation	1.22E-03
46	GO:0006013: mannose metabolic process	1.22E-03
47	GO:0006518: peptide metabolic process	1.22E-03
48	GO:0010207: photosystem II assembly	1.27E-03
49	GO:0010025: wax biosynthetic process	1.59E-03
50	GO:0006636: unsaturated fatty acid biosynthetic process	1.59E-03
51	GO:0034599: cellular response to oxidative stress	1.62E-03
52	GO:0010371: regulation of gibberellin biosynthetic process	1.76E-03
53	GO:0071484: cellular response to light intensity	1.76E-03
54	GO:0009152: purine ribonucleotide biosynthetic process	1.76E-03
55	GO:0046653: tetrahydrofolate metabolic process	1.76E-03
56	GO:0010239: chloroplast mRNA processing	1.76E-03
57	GO:0080170: hydrogen peroxide transmembrane transport	1.76E-03
58	GO:0009650: UV protection	1.76E-03
59	GO:1901332: negative regulation of lateral root development	1.76E-03
60	GO:0010222: stem vascular tissue pattern formation	2.37E-03
61	GO:0045727: positive regulation of translation	2.37E-03
62	GO:0015994: chlorophyll metabolic process	2.37E-03
63	GO:0030104: water homeostasis	2.37E-03
64	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.54E-03
65	GO:0006461: protein complex assembly	3.03E-03
66	GO:0080110: sporopollenin biosynthetic process	3.03E-03
67	GO:0006564: L-serine biosynthetic process	3.03E-03
68	GO:0010236: plastoquinone biosynthetic process	3.03E-03
69	GO:0045038: protein import into chloroplast thylakoid membrane	3.03E-03
70	GO:0042335: cuticle development	3.24E-03
71	GO:0034220: ion transmembrane transport	3.24E-03
72	GO:0000470: maturation of LSU-rRNA	3.74E-03
73	GO:0009913: epidermal cell differentiation	3.74E-03
74	GO:0010337: regulation of salicylic acid metabolic process	3.74E-03
75	GO:0006561: proline biosynthetic process	3.74E-03
76	GO:0000302: response to reactive oxygen species	4.31E-03
77	GO:0010019: chloroplast-nucleus signaling pathway	4.50E-03
78	GO:0042372: phylloquinone biosynthetic process	4.50E-03
79	GO:0017148: negative regulation of translation	4.50E-03
80	GO:0009828: plant-type cell wall loosening	5.22E-03
81	GO:0009395: phospholipid catabolic process	5.32E-03
82	GO:1900057: positive regulation of leaf senescence	5.32E-03
83	GO:0006400: tRNA modification	5.32E-03
84	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.76E-03
85	GO:0010492: maintenance of shoot apical meristem identity	6.17E-03
86	GO:0048564: photosystem I assembly	6.17E-03
87	GO:0008610: lipid biosynthetic process	6.17E-03
88	GO:0006353: DNA-templated transcription, termination	6.17E-03
89	GO:0006605: protein targeting	6.17E-03
90	GO:2000070: regulation of response to water deprivation	6.17E-03
91	GO:0006002: fructose 6-phosphate metabolic process	7.08E-03
92	GO:0071482: cellular response to light stimulus	7.08E-03
93	GO:0022900: electron transport chain	7.08E-03
94	GO:0009657: plastid organization	7.08E-03
95	GO:0006412: translation	7.38E-03
96	GO:0042744: hydrogen peroxide catabolic process	7.64E-03
97	GO:0034765: regulation of ion transmembrane transport	8.04E-03
98	GO:0048507: meristem development	8.04E-03
99	GO:0000373: Group II intron splicing	8.04E-03
100	GO:0018298: protein-chromophore linkage	8.14E-03
101	GO:0010311: lateral root formation	8.56E-03
102	GO:0009638: phototropism	9.03E-03
103	GO:0016042: lipid catabolic process	9.47E-03
104	GO:0006865: amino acid transport	9.88E-03
105	GO:0048829: root cap development	1.01E-02
106	GO:0006949: syncytium formation	1.01E-02
107	GO:0006032: chitin catabolic process	1.01E-02
108	GO:0009688: abscisic acid biosynthetic process	1.01E-02
109	GO:0048765: root hair cell differentiation	1.12E-02
110	GO:0046856: phosphatidylinositol dephosphorylation	1.12E-02
111	GO:0000038: very long-chain fatty acid metabolic process	1.12E-02
112	GO:0008285: negative regulation of cell proliferation	1.12E-02
113	GO:0043085: positive regulation of catalytic activity	1.12E-02
114	GO:0006879: cellular iron ion homeostasis	1.12E-02
115	GO:0018119: peptidyl-cysteine S-nitrosylation	1.12E-02
116	GO:0008152: metabolic process	1.15E-02
117	GO:0030001: metal ion transport	1.18E-02
118	GO:0005983: starch catabolic process	1.23E-02
119	GO:0010114: response to red light	1.34E-02
120	GO:0006094: gluconeogenesis	1.34E-02
121	GO:0005986: sucrose biosynthetic process	1.34E-02
122	GO:0010588: cotyledon vascular tissue pattern formation	1.34E-02
123	GO:0009785: blue light signaling pathway	1.34E-02
124	GO:0010628: positive regulation of gene expression	1.34E-02
125	GO:0006006: glucose metabolic process	1.34E-02
126	GO:0010143: cutin biosynthetic process	1.46E-02
127	GO:0019253: reductive pentose-phosphate cycle	1.46E-02
128	GO:0010053: root epidermal cell differentiation	1.59E-02
129	GO:0009825: multidimensional cell growth	1.59E-02
130	GO:0010167: response to nitrate	1.59E-02
131	GO:0071732: cellular response to nitric oxide	1.59E-02
132	GO:0090351: seedling development	1.59E-02
133	GO:0006810: transport	1.67E-02
134	GO:0009664: plant-type cell wall organization	1.68E-02
135	GO:0009658: chloroplast organization	1.70E-02
136	GO:0006833: water transport	1.71E-02
137	GO:0009809: lignin biosynthetic process	1.81E-02
138	GO:0006364: rRNA processing	1.81E-02
139	GO:0000027: ribosomal large subunit assembly	1.85E-02
140	GO:0051017: actin filament bundle assembly	1.85E-02
141	GO:0010073: meristem maintenance	1.98E-02
142	GO:0019953: sexual reproduction	1.98E-02
143	GO:0007017: microtubule-based process	1.98E-02
144	GO:0009768: photosynthesis, light harvesting in photosystem I	1.98E-02
145	GO:0031408: oxylipin biosynthetic process	2.12E-02
146	GO:0003333: amino acid transmembrane transport	2.12E-02
147	GO:0016998: cell wall macromolecule catabolic process	2.12E-02
148	GO:0080167: response to karrikin	2.24E-02
149	GO:0016226: iron-sulfur cluster assembly	2.26E-02
150	GO:0035428: hexose transmembrane transport	2.26E-02
151	GO:0010227: floral organ abscission	2.40E-02
152	GO:0009411: response to UV	2.40E-02
153	GO:0071369: cellular response to ethylene stimulus	2.40E-02
154	GO:0010584: pollen exine formation	2.55E-02
155	GO:0009624: response to nematode	2.57E-02
156	GO:0042391: regulation of membrane potential	2.85E-02
157	GO:0080022: primary root development	2.85E-02
158	GO:0010182: sugar mediated signaling pathway	3.01E-02
159	GO:0046323: glucose import	3.01E-02
160	GO:0009958: positive gravitropism	3.01E-02
161	GO:0006662: glycerol ether metabolic process	3.01E-02
162	GO:0006869: lipid transport	3.14E-02
163	GO:0015986: ATP synthesis coupled proton transport	3.17E-02
164	GO:0009737: response to abscisic acid	3.35E-02
165	GO:0009058: biosynthetic process	3.40E-02
166	GO:0032259: methylation	3.44E-02
167	GO:0016032: viral process	3.67E-02
168	GO:0009790: embryo development	3.76E-02
169	GO:0071281: cellular response to iron ion	3.84E-02
170	GO:0009409: response to cold	3.88E-02
171	GO:0006633: fatty acid biosynthetic process	4.04E-02
172	GO:0071805: potassium ion transmembrane transport	4.19E-02
173	GO:0045490: pectin catabolic process	4.43E-02
174	GO:0009627: systemic acquired resistance	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
7	GO:0047661: amino-acid racemase activity	0.00E+00
8	GO:0019843: rRNA binding	6.77E-09
9	GO:0005528: FK506 binding	6.29E-06
10	GO:0043023: ribosomal large subunit binding	4.24E-05
11	GO:0016851: magnesium chelatase activity	4.24E-05
12	GO:0004130: cytochrome-c peroxidase activity	1.70E-04
13	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.70E-04
14	GO:0050139: nicotinate-N-glucosyltransferase activity	3.47E-04
15	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.47E-04
16	GO:0045485: omega-6 fatty acid desaturase activity	3.47E-04
17	GO:0005080: protein kinase C binding	3.47E-04
18	GO:0015245: fatty acid transporter activity	3.47E-04
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.12E-04
20	GO:0047746: chlorophyllase activity	7.56E-04
21	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.56E-04
22	GO:0004617: phosphoglycerate dehydrogenase activity	7.56E-04
23	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.56E-04
24	GO:0016630: protochlorophyllide reductase activity	7.56E-04
25	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.56E-04
26	GO:0016788: hydrolase activity, acting on ester bonds	9.10E-04
27	GO:0016746: transferase activity, transferring acyl groups	9.23E-04
28	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.22E-03
29	GO:0008864: formyltetrahydrofolate deformylase activity	1.22E-03
30	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.22E-03
31	GO:0003735: structural constituent of ribosome	1.50E-03
32	GO:0052689: carboxylic ester hydrolase activity	1.53E-03
33	GO:0016491: oxidoreductase activity	1.57E-03
34	GO:0004445: inositol-polyphosphate 5-phosphatase activity	1.76E-03
35	GO:0004659: prenyltransferase activity	2.37E-03
36	GO:0010011: auxin binding	2.37E-03
37	GO:0010328: auxin influx transmembrane transporter activity	2.37E-03
38	GO:0043495: protein anchor	2.37E-03
39	GO:0004392: heme oxygenase (decyclizing) activity	2.37E-03
40	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.37E-03
41	GO:0030570: pectate lyase activity	2.54E-03
42	GO:0003959: NADPH dehydrogenase activity	3.03E-03
43	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.74E-03
44	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.74E-03
45	GO:0042578: phosphoric ester hydrolase activity	3.74E-03
46	GO:0016688: L-ascorbate peroxidase activity	3.74E-03
47	GO:0050662: coenzyme binding	3.75E-03
48	GO:0004559: alpha-mannosidase activity	4.50E-03
49	GO:0005242: inward rectifier potassium channel activity	4.50E-03
50	GO:0004017: adenylate kinase activity	4.50E-03
51	GO:0019899: enzyme binding	5.32E-03
52	GO:0016597: amino acid binding	5.89E-03
53	GO:0052747: sinapyl alcohol dehydrogenase activity	6.17E-03
54	GO:0043022: ribosome binding	6.17E-03
55	GO:0015250: water channel activity	6.23E-03
56	GO:0016168: chlorophyll binding	6.59E-03
57	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.08E-03
58	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.14E-03
59	GO:0005381: iron ion transmembrane transporter activity	9.03E-03
60	GO:0003824: catalytic activity	9.53E-03
61	GO:0004568: chitinase activity	1.01E-02
62	GO:0008047: enzyme activator activity	1.01E-02
63	GO:0009055: electron carrier activity	1.10E-02
64	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.23E-02
65	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.23E-02
66	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.33E-02
67	GO:0042802: identical protein binding	1.33E-02
68	GO:0031072: heat shock protein binding	1.34E-02
69	GO:0004565: beta-galactosidase activity	1.34E-02
70	GO:0004022: alcohol dehydrogenase (NAD) activity	1.34E-02
71	GO:0008266: poly(U) RNA binding	1.46E-02
72	GO:0051287: NAD binding	1.62E-02
73	GO:0031409: pigment binding	1.71E-02
74	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.71E-02
75	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.71E-02
76	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.71E-02
77	GO:0051536: iron-sulfur cluster binding	1.85E-02
78	GO:0015171: amino acid transmembrane transporter activity	2.00E-02
79	GO:0005509: calcium ion binding	2.05E-02
80	GO:0004176: ATP-dependent peptidase activity	2.12E-02
81	GO:0022891: substrate-specific transmembrane transporter activity	2.40E-02
82	GO:0003756: protein disulfide isomerase activity	2.55E-02
83	GO:0047134: protein-disulfide reductase activity	2.70E-02
84	GO:0005249: voltage-gated potassium channel activity	2.85E-02
85	GO:0030551: cyclic nucleotide binding	2.85E-02
86	GO:0008080: N-acetyltransferase activity	3.01E-02
87	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.01E-02
88	GO:0004791: thioredoxin-disulfide reductase activity	3.17E-02
89	GO:0005355: glucose transmembrane transporter activity	3.17E-02
90	GO:0016787: hydrolase activity	3.39E-02
91	GO:0016829: lyase activity	3.48E-02
92	GO:0004518: nuclease activity	3.67E-02
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.84E-02
94	GO:0051015: actin filament binding	3.84E-02
95	GO:0016791: phosphatase activity	4.01E-02
96	GO:0005200: structural constituent of cytoskeleton	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	9.11E-43
3	GO:0009535: chloroplast thylakoid membrane	5.36E-29
4	GO:0009570: chloroplast stroma	1.77E-23
5	GO:0009534: chloroplast thylakoid	5.14E-23
6	GO:0009579: thylakoid	9.81E-22
7	GO:0009543: chloroplast thylakoid lumen	3.44E-19
8	GO:0009941: chloroplast envelope	1.61E-17
9	GO:0031977: thylakoid lumen	1.08E-15
10	GO:0030095: chloroplast photosystem II	5.45E-08
11	GO:0009654: photosystem II oxygen evolving complex	1.93E-07
12	GO:0019898: extrinsic component of membrane	1.54E-06
13	GO:0005840: ribosome	1.30E-05
14	GO:0010007: magnesium chelatase complex	1.92E-05
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.25E-05
16	GO:0031969: chloroplast membrane	4.69E-05
17	GO:0043674: columella	3.47E-04
18	GO:0048046: apoplast	4.06E-04
19	GO:0009523: photosystem II	4.70E-04
20	GO:0005618: cell wall	5.39E-04
21	GO:0030093: chloroplast photosystem I	7.56E-04
22	GO:0010287: plastoglobule	1.14E-03
23	GO:0009897: external side of plasma membrane	1.22E-03
24	GO:0033281: TAT protein transport complex	1.22E-03
25	GO:0015630: microtubule cytoskeleton	1.76E-03
26	GO:0016020: membrane	2.93E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.74E-03
28	GO:0009986: cell surface	5.32E-03
29	GO:0009533: chloroplast stromal thylakoid	5.32E-03
30	GO:0042807: central vacuole	5.32E-03
31	GO:0009295: nucleoid	5.55E-03
32	GO:0016021: integral component of membrane	5.85E-03
33	GO:0008180: COP9 signalosome	8.04E-03
34	GO:0032040: small-subunit processome	1.23E-02
35	GO:0005578: proteinaceous extracellular matrix	1.34E-02
36	GO:0009508: plastid chromosome	1.34E-02
37	GO:0030076: light-harvesting complex	1.59E-02
38	GO:0042651: thylakoid membrane	1.98E-02
39	GO:0015629: actin cytoskeleton	2.40E-02
40	GO:0009706: chloroplast inner membrane	2.57E-02
41	GO:0009522: photosystem I	3.17E-02
42	GO:0009536: plastid	3.30E-02
43	GO:0009505: plant-type cell wall	3.42E-02
44	GO:0005886: plasma membrane	4.16E-02
45	GO:0010319: stromule	4.19E-02
46	GO:0031225: anchored component of membrane	4.47E-02
47	GO:0030529: intracellular ribonucleoprotein complex	4.55E-02