co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G09390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
2	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.00E-05
3	GO:0001676: long-chain fatty acid metabolic process	5.65E-05
4	GO:0000460: maturation of 5.8S rRNA	7.90E-05
5	GO:0010405: arabinogalactan protein metabolic process	1.30E-04
6	GO:0000470: maturation of LSU-rRNA	1.30E-04
7	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.30E-04
8	GO:0006511: ubiquitin-dependent protein catabolic process	1.74E-04
9	GO:1900056: negative regulation of leaf senescence	1.88E-04
10	GO:0006605: protein targeting	2.20E-04
11	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.20E-04
12	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.19E-04
13	GO:0045454: cell redox homeostasis	6.92E-04
14	GO:0010193: response to ozone	1.10E-03
15	GO:0030163: protein catabolic process	1.20E-03
16	GO:0009407: toxin catabolic process	1.78E-03
17	GO:0009853: photorespiration	1.95E-03
18	GO:0006631: fatty acid metabolic process	2.19E-03
19	GO:0006486: protein glycosylation	2.82E-03
20	GO:0051603: proteolysis involved in cellular protein catabolic process	2.89E-03
21	GO:0046686: response to cadmium ion	4.49E-03
22	GO:0055114: oxidation-reduction process	5.05E-03
23	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	5.63E-03
24	GO:0009723: response to ethylene	7.79E-03
25	GO:0006886: intracellular protein transport	9.48E-03
26	GO:0045893: positive regulation of transcription, DNA-templated	1.78E-02
27	GO:0042742: defense response to bacterium	2.67E-02
28	GO:0009409: response to cold	3.31E-02
29	GO:0007275: multicellular organism development	4.32E-02
30	GO:0009737: response to abscisic acid	4.57E-02
31	GO:0009793: embryo development ending in seed dormancy	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0050220: prostaglandin-E synthase activity	0.00E+00
2	GO:0004298: threonine-type endopeptidase activity	9.46E-06
3	GO:0043021: ribonucleoprotein complex binding	2.00E-05
4	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.30E-04
5	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.30E-04
6	GO:0004656: procollagen-proline 4-dioxygenase activity	1.59E-04
7	GO:0051920: peroxiredoxin activity	1.59E-04
8	GO:0102391: decanoate--CoA ligase activity	1.59E-04
9	GO:0004467: long-chain fatty acid-CoA ligase activity	1.88E-04
10	GO:0016209: antioxidant activity	2.20E-04
11	GO:0001055: RNA polymerase II activity	3.19E-04
12	GO:0001054: RNA polymerase I activity	3.90E-04
13	GO:0008378: galactosyltransferase activity	4.26E-04
14	GO:0001056: RNA polymerase III activity	4.26E-04
15	GO:0004601: peroxidase activity	4.74E-04
16	GO:0008131: primary amine oxidase activity	5.02E-04
17	GO:0008233: peptidase activity	5.74E-04
18	GO:0031418: L-ascorbic acid binding	6.20E-04
19	GO:0003713: transcription coactivator activity	9.64E-04
20	GO:0048038: quinone binding	1.10E-03
21	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.95E-03
22	GO:0005507: copper ion binding	2.05E-03
23	GO:0004364: glutathione transferase activity	2.25E-03
24	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.82E-03
25	GO:0015035: protein disulfide oxidoreductase activity	3.66E-03
26	GO:0016758: transferase activity, transferring hexosyl groups	4.10E-03
27	GO:0009055: electron carrier activity	1.13E-02
28	GO:0000166: nucleotide binding	1.61E-02
29	GO:0016740: transferase activity	1.86E-02
30	GO:0030246: carbohydrate binding	1.99E-02
31	GO:0005506: iron ion binding	2.64E-02
32	GO:0003824: catalytic activity	2.85E-02
33	GO:0004672: protein kinase activity	3.51E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	1.88E-06
2	GO:0005839: proteasome core complex	9.46E-06
3	GO:0070545: PeBoW complex	2.00E-05
4	GO:0005838: proteasome regulatory particle	3.67E-05
5	GO:0046861: glyoxysomal membrane	3.67E-05
6	GO:0030687: preribosome, large subunit precursor	1.88E-04
7	GO:0009514: glyoxysome	2.52E-04
8	GO:0019773: proteasome core complex, alpha-subunit complex	2.52E-04
9	GO:0005736: DNA-directed RNA polymerase I complex	2.85E-04
10	GO:0005666: DNA-directed RNA polymerase III complex	3.19E-04
11	GO:0000418: DNA-directed RNA polymerase IV complex	3.54E-04
12	GO:0008541: proteasome regulatory particle, lid subcomplex	3.90E-04
13	GO:0005665: DNA-directed RNA polymerase II, core complex	4.26E-04
14	GO:0000419: DNA-directed RNA polymerase V complex	5.80E-04
15	GO:0005730: nucleolus	5.82E-04
16	GO:0045271: respiratory chain complex I	6.61E-04
17	GO:0005774: vacuolar membrane	1.41E-03
18	GO:0005777: peroxisome	1.66E-03
19	GO:0005773: vacuole	2.41E-03
20	GO:0031966: mitochondrial membrane	2.70E-03
21	GO:0005747: mitochondrial respiratory chain complex I	3.23E-03
22	GO:0005834: heterotrimeric G-protein complex	3.30E-03
23	GO:0005654: nucleoplasm	4.10E-03
24	GO:0005623: cell	4.26E-03
25	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.50E-03
26	GO:0048046: apoplast	1.05E-02
27	GO:0005829: cytosol	1.36E-02
28	GO:0031225: anchored component of membrane	2.21E-02
29	GO:0005622: intracellular	2.43E-02
30	GO:0005737: cytoplasm	2.80E-02
31	GO:0000139: Golgi membrane	3.31E-02
32	GO:0005789: endoplasmic reticulum membrane	3.61E-02