GO Enrichment Analysis of Co-expressed Genes with
AT3G09050
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 4 | GO:0006642: triglyceride mobilization | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 7 | GO:0042726: flavin-containing compound metabolic process | 0.00E+00 |
| 8 | GO:0071482: cellular response to light stimulus | 9.71E-07 |
| 9 | GO:0010027: thylakoid membrane organization | 3.21E-06 |
| 10 | GO:0006400: tRNA modification | 5.05E-05 |
| 11 | GO:0015979: photosynthesis | 7.33E-05 |
| 12 | GO:0046166: glyceraldehyde-3-phosphate biosynthetic process | 1.10E-04 |
| 13 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.10E-04 |
| 14 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.10E-04 |
| 15 | GO:1904964: positive regulation of phytol biosynthetic process | 1.10E-04 |
| 16 | GO:0043686: co-translational protein modification | 1.10E-04 |
| 17 | GO:0006427: histidyl-tRNA aminoacylation | 1.10E-04 |
| 18 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 1.10E-04 |
| 19 | GO:0006352: DNA-templated transcription, initiation | 1.73E-04 |
| 20 | GO:0009773: photosynthetic electron transport in photosystem I | 1.73E-04 |
| 21 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.57E-04 |
| 22 | GO:0009658: chloroplast organization | 3.25E-04 |
| 23 | GO:0019563: glycerol catabolic process | 4.25E-04 |
| 24 | GO:0051604: protein maturation | 4.25E-04 |
| 25 | GO:0042780: tRNA 3'-end processing | 4.25E-04 |
| 26 | GO:0030865: cortical cytoskeleton organization | 4.25E-04 |
| 27 | GO:0032504: multicellular organism reproduction | 4.25E-04 |
| 28 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 4.25E-04 |
| 29 | GO:0000913: preprophase band assembly | 4.25E-04 |
| 30 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.10E-04 |
| 31 | GO:2001141: regulation of RNA biosynthetic process | 6.10E-04 |
| 32 | GO:0009152: purine ribonucleotide biosynthetic process | 6.10E-04 |
| 33 | GO:0046653: tetrahydrofolate metabolic process | 6.10E-04 |
| 34 | GO:0071483: cellular response to blue light | 8.10E-04 |
| 35 | GO:0009765: photosynthesis, light harvesting | 8.10E-04 |
| 36 | GO:0015994: chlorophyll metabolic process | 8.10E-04 |
| 37 | GO:0008152: metabolic process | 9.53E-04 |
| 38 | GO:0080110: sporopollenin biosynthetic process | 1.02E-03 |
| 39 | GO:0006564: L-serine biosynthetic process | 1.02E-03 |
| 40 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.02E-03 |
| 41 | GO:0031365: N-terminal protein amino acid modification | 1.02E-03 |
| 42 | GO:0006461: protein complex assembly | 1.02E-03 |
| 43 | GO:0010190: cytochrome b6f complex assembly | 1.25E-03 |
| 44 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.25E-03 |
| 45 | GO:0000470: maturation of LSU-rRNA | 1.25E-03 |
| 46 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.49E-03 |
| 47 | GO:0009772: photosynthetic electron transport in photosystem II | 1.75E-03 |
| 48 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.75E-03 |
| 49 | GO:0010196: nonphotochemical quenching | 1.75E-03 |
| 50 | GO:0006605: protein targeting | 2.03E-03 |
| 51 | GO:0009704: de-etiolation | 2.03E-03 |
| 52 | GO:0048564: photosystem I assembly | 2.03E-03 |
| 53 | GO:0015996: chlorophyll catabolic process | 2.32E-03 |
| 54 | GO:0009657: plastid organization | 2.32E-03 |
| 55 | GO:0000373: Group II intron splicing | 2.62E-03 |
| 56 | GO:0009051: pentose-phosphate shunt, oxidative branch | 2.62E-03 |
| 57 | GO:0010628: positive regulation of gene expression | 4.30E-03 |
| 58 | GO:0006006: glucose metabolic process | 4.30E-03 |
| 59 | GO:0006094: gluconeogenesis | 4.30E-03 |
| 60 | GO:0019253: reductive pentose-phosphate cycle | 4.66E-03 |
| 61 | GO:0010020: chloroplast fission | 4.66E-03 |
| 62 | GO:0090351: seedling development | 5.04E-03 |
| 63 | GO:0009695: jasmonic acid biosynthetic process | 6.25E-03 |
| 64 | GO:0031408: oxylipin biosynthetic process | 6.67E-03 |
| 65 | GO:0006412: translation | 7.88E-03 |
| 66 | GO:0010584: pollen exine formation | 8.00E-03 |
| 67 | GO:0009561: megagametogenesis | 8.00E-03 |
| 68 | GO:0009735: response to cytokinin | 8.45E-03 |
| 69 | GO:0009451: RNA modification | 8.79E-03 |
| 70 | GO:0080022: primary root development | 8.93E-03 |
| 71 | GO:0000226: microtubule cytoskeleton organization | 8.93E-03 |
| 72 | GO:0048544: recognition of pollen | 9.91E-03 |
| 73 | GO:0042254: ribosome biogenesis | 1.36E-02 |
| 74 | GO:0015995: chlorophyll biosynthetic process | 1.59E-02 |
| 75 | GO:0018298: protein-chromophore linkage | 1.71E-02 |
| 76 | GO:0009637: response to blue light | 2.02E-02 |
| 77 | GO:0009853: photorespiration | 2.02E-02 |
| 78 | GO:0055114: oxidation-reduction process | 2.16E-02 |
| 79 | GO:0030001: metal ion transport | 2.22E-02 |
| 80 | GO:0010114: response to red light | 2.42E-02 |
| 81 | GO:0006397: mRNA processing | 2.55E-02 |
| 82 | GO:0006855: drug transmembrane transport | 2.70E-02 |
| 83 | GO:0006364: rRNA processing | 2.99E-02 |
| 84 | GO:0006508: proteolysis | 3.06E-02 |
| 85 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.07E-02 |
| 86 | GO:0006417: regulation of translation | 3.22E-02 |
| 87 | GO:0006096: glycolytic process | 3.37E-02 |
| 88 | GO:0009058: biosynthetic process | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047884: FAD diphosphatase activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 4 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 5 | GO:0001053: plastid sigma factor activity | 1.06E-05 |
| 6 | GO:0016987: sigma factor activity | 1.06E-05 |
| 7 | GO:0005528: FK506 binding | 1.19E-05 |
| 8 | GO:0004033: aldo-keto reductase (NADP) activity | 6.58E-05 |
| 9 | GO:0004821: histidine-tRNA ligase activity | 1.10E-04 |
| 10 | GO:0004321: fatty-acyl-CoA synthase activity | 1.10E-04 |
| 11 | GO:0034256: chlorophyll(ide) b reductase activity | 1.10E-04 |
| 12 | GO:0004807: triose-phosphate isomerase activity | 1.10E-04 |
| 13 | GO:0042586: peptide deformylase activity | 1.10E-04 |
| 14 | GO:0016630: protochlorophyllide reductase activity | 2.57E-04 |
| 15 | GO:0047746: chlorophyllase activity | 2.57E-04 |
| 16 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.57E-04 |
| 17 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.32E-04 |
| 18 | GO:0016787: hydrolase activity | 3.56E-04 |
| 19 | GO:0004751: ribose-5-phosphate isomerase activity | 4.25E-04 |
| 20 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 4.25E-04 |
| 21 | GO:0070402: NADPH binding | 4.25E-04 |
| 22 | GO:0008864: formyltetrahydrofolate deformylase activity | 4.25E-04 |
| 23 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 4.25E-04 |
| 24 | GO:0016491: oxidoreductase activity | 5.25E-04 |
| 25 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 8.10E-04 |
| 26 | GO:0004045: aminoacyl-tRNA hydrolase activity | 8.10E-04 |
| 27 | GO:0043495: protein anchor | 8.10E-04 |
| 28 | GO:0019843: rRNA binding | 8.28E-04 |
| 29 | GO:0003959: NADPH dehydrogenase activity | 1.02E-03 |
| 30 | GO:0047631: ADP-ribose diphosphatase activity | 1.02E-03 |
| 31 | GO:0016597: amino acid binding | 1.18E-03 |
| 32 | GO:0019899: enzyme binding | 1.75E-03 |
| 33 | GO:0043022: ribosome binding | 2.03E-03 |
| 34 | GO:0016207: 4-coumarate-CoA ligase activity | 2.62E-03 |
| 35 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.51E-03 |
| 36 | GO:0031072: heat shock protein binding | 4.30E-03 |
| 37 | GO:0003723: RNA binding | 6.08E-03 |
| 38 | GO:0003824: catalytic activity | 6.55E-03 |
| 39 | GO:0022891: substrate-specific transmembrane transporter activity | 7.55E-03 |
| 40 | GO:0008080: N-acetyltransferase activity | 9.41E-03 |
| 41 | GO:0050662: coenzyme binding | 9.91E-03 |
| 42 | GO:0016788: hydrolase activity, acting on ester bonds | 1.36E-02 |
| 43 | GO:0030246: carbohydrate binding | 1.38E-02 |
| 44 | GO:0016168: chlorophyll binding | 1.47E-02 |
| 45 | GO:0004721: phosphoprotein phosphatase activity | 1.59E-02 |
| 46 | GO:0008236: serine-type peptidase activity | 1.65E-02 |
| 47 | GO:0015238: drug transmembrane transporter activity | 1.77E-02 |
| 48 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.89E-02 |
| 49 | GO:0003746: translation elongation factor activity | 2.02E-02 |
| 50 | GO:0005509: calcium ion binding | 2.09E-02 |
| 51 | GO:0050661: NADP binding | 2.22E-02 |
| 52 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.22E-02 |
| 53 | GO:0004185: serine-type carboxypeptidase activity | 2.42E-02 |
| 54 | GO:0004519: endonuclease activity | 2.66E-02 |
| 55 | GO:0051287: NAD binding | 2.77E-02 |
| 56 | GO:0016874: ligase activity | 3.69E-02 |
| 57 | GO:0051082: unfolded protein binding | 3.85E-02 |
| 58 | GO:0004252: serine-type endopeptidase activity | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.72E-42 |
| 2 | GO:0009570: chloroplast stroma | 1.05E-19 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.44E-15 |
| 4 | GO:0009534: chloroplast thylakoid | 1.47E-14 |
| 5 | GO:0031977: thylakoid lumen | 2.84E-12 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 3.86E-12 |
| 7 | GO:0009941: chloroplast envelope | 9.88E-11 |
| 8 | GO:0009579: thylakoid | 1.73E-10 |
| 9 | GO:0009654: photosystem II oxygen evolving complex | 1.42E-05 |
| 10 | GO:0019898: extrinsic component of membrane | 4.73E-05 |
| 11 | GO:0030981: cortical microtubule cytoskeleton | 2.57E-04 |
| 12 | GO:0030095: chloroplast photosystem II | 2.61E-04 |
| 13 | GO:0042651: thylakoid membrane | 4.03E-04 |
| 14 | GO:0009526: plastid envelope | 8.10E-04 |
| 15 | GO:0009523: photosystem II | 8.23E-04 |
| 16 | GO:0055035: plastid thylakoid membrane | 1.02E-03 |
| 17 | GO:0030529: intracellular ribonucleoprotein complex | 1.25E-03 |
| 18 | GO:0009840: chloroplastic endopeptidase Clp complex | 1.49E-03 |
| 19 | GO:0009533: chloroplast stromal thylakoid | 1.75E-03 |
| 20 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.32E-03 |
| 21 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.62E-03 |
| 22 | GO:0000312: plastid small ribosomal subunit | 4.66E-03 |
| 23 | GO:0015935: small ribosomal subunit | 6.67E-03 |
| 24 | GO:0031969: chloroplast membrane | 1.66E-02 |
| 25 | GO:0005840: ribosome | 2.45E-02 |
| 26 | GO:0043231: intracellular membrane-bounded organelle | 2.70E-02 |
| 27 | GO:0009706: chloroplast inner membrane | 3.85E-02 |
| 28 | GO:0010287: plastoglobule | 4.34E-02 |
| 29 | GO:0005777: peroxisome | 4.95E-02 |