co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G08920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0033231: carbohydrate export	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0007172: signal complex assembly	0.00E+00
6	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
7	GO:0090627: plant epidermal cell differentiation	0.00E+00
8	GO:0032928: regulation of superoxide anion generation	0.00E+00
9	GO:0015995: chlorophyll biosynthetic process	5.24E-15
10	GO:0015979: photosynthesis	1.08E-09
11	GO:0006782: protoporphyrinogen IX biosynthetic process	2.67E-08
12	GO:0006783: heme biosynthetic process	1.69E-06
13	GO:0043481: anthocyanin accumulation in tissues in response to UV light	6.48E-06
14	GO:0010218: response to far red light	9.01E-06
15	GO:0009637: response to blue light	1.21E-05
16	GO:0009768: photosynthesis, light harvesting in photosystem I	1.71E-05
17	GO:0010114: response to red light	2.04E-05
18	GO:0009926: auxin polar transport	2.04E-05
19	GO:0009640: photomorphogenesis	2.04E-05
20	GO:0009734: auxin-activated signaling pathway	4.28E-05
21	GO:0010480: microsporocyte differentiation	1.20E-04
22	GO:0033206: meiotic cytokinesis	1.20E-04
23	GO:0043007: maintenance of rDNA	1.20E-04
24	GO:1902334: fructose export from vacuole to cytoplasm	1.20E-04
25	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.20E-04
26	GO:0015755: fructose transport	1.20E-04
27	GO:0000476: maturation of 4.5S rRNA	1.20E-04
28	GO:0006824: cobalt ion transport	1.20E-04
29	GO:0000967: rRNA 5'-end processing	1.20E-04
30	GO:0015671: oxygen transport	1.20E-04
31	GO:0006779: porphyrin-containing compound biosynthetic process	1.41E-04
32	GO:0018298: protein-chromophore linkage	1.60E-04
33	GO:0006949: syncytium formation	1.67E-04
34	GO:0009750: response to fructose	1.96E-04
35	GO:0008361: regulation of cell size	2.26E-04
36	GO:0016122: xanthophyll metabolic process	2.77E-04
37	GO:0034470: ncRNA processing	2.77E-04
38	GO:0034755: iron ion transmembrane transport	2.77E-04
39	GO:0035304: regulation of protein dephosphorylation	2.77E-04
40	GO:0010541: acropetal auxin transport	2.77E-04
41	GO:0009934: regulation of meristem structural organization	2.94E-04
42	GO:0010207: photosystem II assembly	2.94E-04
43	GO:0009735: response to cytokinin	4.04E-04
44	GO:0009664: plant-type cell wall organization	4.23E-04
45	GO:0045493: xylan catabolic process	4.58E-04
46	GO:0010160: formation of animal organ boundary	4.58E-04
47	GO:0090391: granum assembly	4.58E-04
48	GO:0009733: response to auxin	4.81E-04
49	GO:0051260: protein homooligomerization	4.95E-04
50	GO:0048443: stamen development	6.39E-04
51	GO:0010306: rhamnogalacturonan II biosynthetic process	6.57E-04
52	GO:0009740: gibberellic acid mediated signaling pathway	6.69E-04
53	GO:0009741: response to brassinosteroid	8.00E-04
54	GO:0009958: positive gravitropism	8.00E-04
55	GO:0042938: dipeptide transport	8.72E-04
56	GO:0009765: photosynthesis, light harvesting	8.72E-04
57	GO:0030007: cellular potassium ion homeostasis	8.72E-04
58	GO:0009823: cytokinin catabolic process	1.10E-03
59	GO:0006656: phosphatidylcholine biosynthetic process	1.10E-03
60	GO:0010117: photoprotection	1.10E-03
61	GO:0009828: plant-type cell wall loosening	1.17E-03
62	GO:0009639: response to red or far red light	1.17E-03
63	GO:0040008: regulation of growth	1.34E-03
64	GO:0042549: photosystem II stabilization	1.35E-03
65	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.35E-03
66	GO:0042176: regulation of protein catabolic process	1.35E-03
67	GO:0010315: auxin efflux	1.35E-03
68	GO:0009913: epidermal cell differentiation	1.35E-03
69	GO:0009228: thiamine biosynthetic process	1.35E-03
70	GO:0060918: auxin transport	1.35E-03
71	GO:0007275: multicellular organism development	1.46E-03
72	GO:0010029: regulation of seed germination	1.47E-03
73	GO:0010189: vitamin E biosynthetic process	1.61E-03
74	GO:2000033: regulation of seed dormancy process	1.61E-03
75	GO:0009942: longitudinal axis specification	1.61E-03
76	GO:0048437: floral organ development	1.89E-03
77	GO:0010196: nonphotochemical quenching	1.89E-03
78	GO:0009769: photosynthesis, light harvesting in photosystem II	1.89E-03
79	GO:0050829: defense response to Gram-negative bacterium	1.89E-03
80	GO:0009645: response to low light intensity stimulus	1.89E-03
81	GO:0010119: regulation of stomatal movement	2.08E-03
82	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.19E-03
83	GO:0009642: response to light intensity	2.19E-03
84	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	2.19E-03
85	GO:0046620: regulation of organ growth	2.19E-03
86	GO:0006353: DNA-templated transcription, termination	2.19E-03
87	GO:0009690: cytokinin metabolic process	2.19E-03
88	GO:0009826: unidimensional cell growth	2.35E-03
89	GO:0034599: cellular response to oxidative stress	2.38E-03
90	GO:0007389: pattern specification process	2.50E-03
91	GO:0009657: plastid organization	2.50E-03
92	GO:0019432: triglyceride biosynthetic process	2.82E-03
93	GO:0010206: photosystem II repair	2.82E-03
94	GO:0034765: regulation of ion transmembrane transport	2.82E-03
95	GO:0010205: photoinhibition	3.16E-03
96	GO:0009688: abscisic acid biosynthetic process	3.51E-03
97	GO:0006995: cellular response to nitrogen starvation	3.51E-03
98	GO:0048229: gametophyte development	3.88E-03
99	GO:0009698: phenylpropanoid metabolic process	3.88E-03
100	GO:0009773: photosynthetic electron transport in photosystem I	3.88E-03
101	GO:0019684: photosynthesis, light reaction	3.88E-03
102	GO:0043085: positive regulation of catalytic activity	3.88E-03
103	GO:0015706: nitrate transport	4.26E-03
104	GO:0010075: regulation of meristem growth	4.64E-03
105	GO:0006094: gluconeogenesis	4.64E-03
106	GO:0010540: basipetal auxin transport	5.04E-03
107	GO:0009624: response to nematode	5.58E-03
108	GO:0006289: nucleotide-excision repair	6.32E-03
109	GO:2000377: regulation of reactive oxygen species metabolic process	6.32E-03
110	GO:0009863: salicylic acid mediated signaling pathway	6.32E-03
111	GO:0010187: negative regulation of seed germination	6.32E-03
112	GO:0007017: microtubule-based process	6.76E-03
113	GO:0009269: response to desiccation	7.22E-03
114	GO:0016114: terpenoid biosynthetic process	7.22E-03
115	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.18E-03
116	GO:0070417: cellular response to cold	9.17E-03
117	GO:0045490: pectin catabolic process	9.64E-03
118	GO:0007623: circadian rhythm	9.64E-03
119	GO:0048653: anther development	9.68E-03
120	GO:0006662: glycerol ether metabolic process	1.02E-02
121	GO:0048868: pollen tube development	1.02E-02
122	GO:0007018: microtubule-based movement	1.07E-02
123	GO:0009646: response to absence of light	1.07E-02
124	GO:0009739: response to gibberellin	1.08E-02
125	GO:0048825: cotyledon development	1.13E-02
126	GO:0009749: response to glucose	1.13E-02
127	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.18E-02
128	GO:0010193: response to ozone	1.18E-02
129	GO:0000302: response to reactive oxygen species	1.18E-02
130	GO:0010583: response to cyclopentenone	1.24E-02
131	GO:0010252: auxin homeostasis	1.36E-02
132	GO:0071805: potassium ion transmembrane transport	1.41E-02
133	GO:0055085: transmembrane transport	1.48E-02
134	GO:0010411: xyloglucan metabolic process	1.72E-02
135	GO:0080167: response to karrikin	1.86E-02
136	GO:0000160: phosphorelay signal transduction system	1.92E-02
137	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.92E-02
138	GO:0007568: aging	2.05E-02
139	GO:0048527: lateral root development	2.05E-02
140	GO:0016051: carbohydrate biosynthetic process	2.19E-02
141	GO:0009867: jasmonic acid mediated signaling pathway	2.19E-02
142	GO:0006631: fatty acid metabolic process	2.48E-02
143	GO:0009744: response to sucrose	2.63E-02
144	GO:0009644: response to high light intensity	2.78E-02
145	GO:0048364: root development	2.86E-02
146	GO:0042538: hyperosmotic salinity response	3.09E-02
147	GO:0006364: rRNA processing	3.25E-02
148	GO:0009736: cytokinin-activated signaling pathway	3.25E-02
149	GO:0010224: response to UV-B	3.33E-02
150	GO:0006857: oligopeptide transport	3.41E-02
151	GO:0006417: regulation of translation	3.49E-02
152	GO:0006096: glycolytic process	3.66E-02
153	GO:0043086: negative regulation of catalytic activity	3.66E-02
154	GO:0042545: cell wall modification	4.09E-02
155	GO:0006396: RNA processing	4.26E-02
156	GO:0009742: brassinosteroid mediated signaling pathway	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0015284: fructose uniporter activity	0.00E+00
2	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
3	GO:0015269: calcium-activated potassium channel activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0004853: uroporphyrinogen decarboxylase activity	0.00E+00
6	GO:0045550: geranylgeranyl reductase activity	0.00E+00
7	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
8	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
9	GO:0010329: auxin efflux transmembrane transporter activity	6.58E-06
10	GO:0031409: pigment binding	1.21E-05
11	GO:0016168: chlorophyll binding	1.19E-04
12	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.20E-04
13	GO:0005344: oxygen transporter activity	1.20E-04
14	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.20E-04
15	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.20E-04
16	GO:0010242: oxygen evolving activity	1.20E-04
17	GO:0000234: phosphoethanolamine N-methyltransferase activity	2.77E-04
18	GO:0016868: intramolecular transferase activity, phosphotransferases	2.77E-04
19	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	2.77E-04
20	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.77E-04
21	GO:0019172: glyoxalase III activity	2.77E-04
22	GO:0005353: fructose transmembrane transporter activity	2.77E-04
23	GO:0005515: protein binding	4.17E-04
24	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.58E-04
25	GO:0033612: receptor serine/threonine kinase binding	4.95E-04
26	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.57E-04
27	GO:0016851: magnesium chelatase activity	6.57E-04
28	GO:0046556: alpha-L-arabinofuranosidase activity	8.72E-04
29	GO:0042936: dipeptide transporter activity	8.72E-04
30	GO:0010328: auxin influx transmembrane transporter activity	8.72E-04
31	GO:0070628: proteasome binding	8.72E-04
32	GO:0009044: xylan 1,4-beta-xylosidase activity	8.72E-04
33	GO:0019139: cytokinin dehydrogenase activity	1.10E-03
34	GO:0015271: outward rectifier potassium channel activity	1.35E-03
35	GO:0004332: fructose-bisphosphate aldolase activity	1.35E-03
36	GO:0004130: cytochrome-c peroxidase activity	1.35E-03
37	GO:0031593: polyubiquitin binding	1.35E-03
38	GO:0004462: lactoylglutathione lyase activity	1.35E-03
39	GO:0005267: potassium channel activity	2.50E-03
40	GO:0000989: transcription factor activity, transcription factor binding	2.82E-03
41	GO:0043621: protein self-association	3.16E-03
42	GO:0005381: iron ion transmembrane transporter activity	3.16E-03
43	GO:0009672: auxin:proton symporter activity	3.16E-03
44	GO:0008047: enzyme activator activity	3.51E-03
45	GO:0015020: glucuronosyltransferase activity	3.51E-03
46	GO:0003777: microtubule motor activity	4.35E-03
47	GO:0031072: heat shock protein binding	4.64E-03
48	GO:0008081: phosphoric diester hydrolase activity	4.64E-03
49	GO:0008266: poly(U) RNA binding	5.04E-03
50	GO:0008131: primary amine oxidase activity	5.04E-03
51	GO:0004190: aspartic-type endopeptidase activity	5.46E-03
52	GO:0051119: sugar transmembrane transporter activity	5.46E-03
53	GO:0043130: ubiquitin binding	6.32E-03
54	GO:0005216: ion channel activity	6.76E-03
55	GO:0030570: pectate lyase activity	8.18E-03
56	GO:0003727: single-stranded RNA binding	8.66E-03
57	GO:0003756: protein disulfide isomerase activity	8.66E-03
58	GO:0046910: pectinesterase inhibitor activity	8.98E-03
59	GO:0047134: protein-disulfide reductase activity	9.17E-03
60	GO:0004791: thioredoxin-disulfide reductase activity	1.07E-02
61	GO:0048038: quinone binding	1.18E-02
62	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.23E-02
63	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.30E-02
64	GO:0000156: phosphorelay response regulator activity	1.30E-02
65	GO:0003684: damaged DNA binding	1.36E-02
66	GO:0005200: structural constituent of cytoskeleton	1.41E-02
67	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.41E-02
68	GO:0008375: acetylglucosaminyltransferase activity	1.66E-02
69	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.79E-02
70	GO:0005096: GTPase activator activity	1.92E-02
71	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.05E-02
72	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.33E-02
73	GO:0004185: serine-type carboxypeptidase activity	2.63E-02
74	GO:0051537: 2 iron, 2 sulfur cluster binding	2.78E-02
75	GO:0005215: transporter activity	3.03E-02
76	GO:0045330: aspartyl esterase activity	3.49E-02
77	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.74E-02
78	GO:0008289: lipid binding	3.81E-02
79	GO:0030599: pectinesterase activity	4.00E-02
80	GO:0051082: unfolded protein binding	4.17E-02
81	GO:0015035: protein disulfide oxidoreductase activity	4.26E-02
82	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009534: chloroplast thylakoid	4.57E-17
4	GO:0009535: chloroplast thylakoid membrane	2.25E-16
5	GO:0009507: chloroplast	5.23E-13
6	GO:0009543: chloroplast thylakoid lumen	9.81E-09
7	GO:0009522: photosystem I	2.11E-08
8	GO:0009579: thylakoid	9.37E-08
9	GO:0010287: plastoglobule	2.53E-07
10	GO:0009570: chloroplast stroma	1.22E-06
11	GO:0009941: chloroplast envelope	1.51E-06
12	GO:0009517: PSII associated light-harvesting complex II	1.22E-05
13	GO:0009538: photosystem I reaction center	7.49E-05
14	GO:0009783: photosystem II antenna complex	1.20E-04
15	GO:0030093: chloroplast photosystem I	2.77E-04
16	GO:0031977: thylakoid lumen	2.82E-04
17	GO:0030095: chloroplast photosystem II	2.94E-04
18	GO:0030076: light-harvesting complex	3.30E-04
19	GO:0010007: magnesium chelatase complex	4.58E-04
20	GO:0031969: chloroplast membrane	5.44E-04
21	GO:0009531: secondary cell wall	6.57E-04
22	GO:0042646: plastid nucleoid	6.57E-04
23	GO:0030660: Golgi-associated vesicle membrane	8.72E-04
24	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	8.72E-04
25	GO:0009523: photosystem II	9.17E-04
26	GO:0055035: plastid thylakoid membrane	1.10E-03
27	GO:0016020: membrane	1.17E-03
28	GO:0016363: nuclear matrix	1.61E-03
29	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.19E-03
30	GO:0042644: chloroplast nucleoid	2.82E-03
31	GO:0045298: tubulin complex	2.82E-03
32	GO:0005765: lysosomal membrane	3.88E-03
33	GO:0009508: plastid chromosome	4.64E-03
34	GO:0009706: chloroplast inner membrane	5.58E-03
35	GO:0009654: photosystem II oxygen evolving complex	6.76E-03
36	GO:0042651: thylakoid membrane	6.76E-03
37	GO:0005623: cell	7.17E-03
38	GO:0016021: integral component of membrane	7.74E-03
39	GO:0005871: kinesin complex	9.17E-03
40	GO:0019898: extrinsic component of membrane	1.13E-02
41	GO:0071944: cell periphery	1.30E-02
42	GO:0009295: nucleoid	1.41E-02
43	GO:0005874: microtubule	1.79E-02
44	GO:0005618: cell wall	1.80E-02
45	GO:0000325: plant-type vacuole	2.05E-02
46	GO:0009505: plant-type cell wall	3.54E-02
47	GO:0010008: endosome membrane	3.74E-02