GO Enrichment Analysis of Co-expressed Genes with
AT3G08740
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 5 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 6 | GO:0046719: regulation by virus of viral protein levels in host cell | 0.00E+00 |
| 7 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 8 | GO:0015742: alpha-ketoglutarate transport | 0.00E+00 |
| 9 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 10 | GO:0042407: cristae formation | 0.00E+00 |
| 11 | GO:0006412: translation | 6.16E-15 |
| 12 | GO:0032544: plastid translation | 7.88E-11 |
| 13 | GO:0009658: chloroplast organization | 1.10E-09 |
| 14 | GO:0006457: protein folding | 6.00E-07 |
| 15 | GO:0009735: response to cytokinin | 1.81E-06 |
| 16 | GO:0042254: ribosome biogenesis | 8.92E-06 |
| 17 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.01E-05 |
| 18 | GO:0009790: embryo development | 2.44E-05 |
| 19 | GO:0000413: protein peptidyl-prolyl isomerization | 6.82E-05 |
| 20 | GO:0042255: ribosome assembly | 1.11E-04 |
| 21 | GO:0006353: DNA-templated transcription, termination | 1.11E-04 |
| 22 | GO:0032502: developmental process | 1.16E-04 |
| 23 | GO:0043489: RNA stabilization | 1.54E-04 |
| 24 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.54E-04 |
| 25 | GO:1904964: positive regulation of phytol biosynthetic process | 1.54E-04 |
| 26 | GO:0042371: vitamin K biosynthetic process | 1.54E-04 |
| 27 | GO:0010027: thylakoid membrane organization | 1.79E-04 |
| 28 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.04E-04 |
| 29 | GO:0015995: chlorophyll biosynthetic process | 2.25E-04 |
| 30 | GO:0045036: protein targeting to chloroplast | 2.40E-04 |
| 31 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.40E-04 |
| 32 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.81E-04 |
| 33 | GO:0006423: cysteinyl-tRNA aminoacylation | 3.51E-04 |
| 34 | GO:0006568: tryptophan metabolic process | 3.51E-04 |
| 35 | GO:0010424: DNA methylation on cytosine within a CG sequence | 3.51E-04 |
| 36 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.51E-04 |
| 37 | GO:0010069: zygote asymmetric cytokinesis in embryo sac | 3.51E-04 |
| 38 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 5.75E-04 |
| 39 | GO:0042742: defense response to bacterium | 7.76E-04 |
| 40 | GO:0006165: nucleoside diphosphate phosphorylation | 8.23E-04 |
| 41 | GO:0006228: UTP biosynthetic process | 8.23E-04 |
| 42 | GO:0031048: chromatin silencing by small RNA | 8.23E-04 |
| 43 | GO:0006424: glutamyl-tRNA aminoacylation | 8.23E-04 |
| 44 | GO:0006986: response to unfolded protein | 8.23E-04 |
| 45 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 8.23E-04 |
| 46 | GO:2001141: regulation of RNA biosynthetic process | 8.23E-04 |
| 47 | GO:0015729: oxaloacetate transport | 8.23E-04 |
| 48 | GO:0006241: CTP biosynthetic process | 8.23E-04 |
| 49 | GO:0019048: modulation by virus of host morphology or physiology | 8.23E-04 |
| 50 | GO:0051567: histone H3-K9 methylation | 1.09E-03 |
| 51 | GO:0044206: UMP salvage | 1.09E-03 |
| 52 | GO:0006021: inositol biosynthetic process | 1.09E-03 |
| 53 | GO:0006808: regulation of nitrogen utilization | 1.09E-03 |
| 54 | GO:0019676: ammonia assimilation cycle | 1.09E-03 |
| 55 | GO:0015743: malate transport | 1.09E-03 |
| 56 | GO:0006183: GTP biosynthetic process | 1.09E-03 |
| 57 | GO:0009793: embryo development ending in seed dormancy | 1.21E-03 |
| 58 | GO:0045454: cell redox homeostasis | 1.21E-03 |
| 59 | GO:0071423: malate transmembrane transport | 1.38E-03 |
| 60 | GO:0043097: pyrimidine nucleoside salvage | 1.38E-03 |
| 61 | GO:0032543: mitochondrial translation | 1.38E-03 |
| 62 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.38E-03 |
| 63 | GO:0009409: response to cold | 1.40E-03 |
| 64 | GO:0006206: pyrimidine nucleobase metabolic process | 1.70E-03 |
| 65 | GO:0016458: gene silencing | 1.70E-03 |
| 66 | GO:0006354: DNA-templated transcription, elongation | 1.70E-03 |
| 67 | GO:0042549: photosystem II stabilization | 1.70E-03 |
| 68 | GO:0006633: fatty acid biosynthetic process | 1.96E-03 |
| 69 | GO:1901259: chloroplast rRNA processing | 2.03E-03 |
| 70 | GO:0010555: response to mannitol | 2.03E-03 |
| 71 | GO:0042026: protein refolding | 2.03E-03 |
| 72 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.39E-03 |
| 73 | GO:0009817: defense response to fungus, incompatible interaction | 2.54E-03 |
| 74 | GO:0008380: RNA splicing | 2.76E-03 |
| 75 | GO:0000105: histidine biosynthetic process | 2.77E-03 |
| 76 | GO:0009642: response to light intensity | 2.77E-03 |
| 77 | GO:0009657: plastid organization | 3.16E-03 |
| 78 | GO:0071482: cellular response to light stimulus | 3.16E-03 |
| 79 | GO:0006783: heme biosynthetic process | 3.58E-03 |
| 80 | GO:0006349: regulation of gene expression by genetic imprinting | 4.01E-03 |
| 81 | GO:0031425: chloroplast RNA processing | 4.01E-03 |
| 82 | GO:0043067: regulation of programmed cell death | 4.01E-03 |
| 83 | GO:0030422: production of siRNA involved in RNA interference | 4.46E-03 |
| 84 | GO:0006949: syncytium formation | 4.46E-03 |
| 85 | GO:0009073: aromatic amino acid family biosynthetic process | 4.92E-03 |
| 86 | GO:0043085: positive regulation of catalytic activity | 4.92E-03 |
| 87 | GO:0006415: translational termination | 4.92E-03 |
| 88 | GO:0006352: DNA-templated transcription, initiation | 4.92E-03 |
| 89 | GO:0010216: maintenance of DNA methylation | 4.92E-03 |
| 90 | GO:0009773: photosynthetic electron transport in photosystem I | 4.92E-03 |
| 91 | GO:0045037: protein import into chloroplast stroma | 5.41E-03 |
| 92 | GO:0006790: sulfur compound metabolic process | 5.41E-03 |
| 93 | GO:0015979: photosynthesis | 5.96E-03 |
| 94 | GO:0010207: photosystem II assembly | 6.42E-03 |
| 95 | GO:0046854: phosphatidylinositol phosphorylation | 6.95E-03 |
| 96 | GO:0009624: response to nematode | 7.91E-03 |
| 97 | GO:0019344: cysteine biosynthetic process | 8.05E-03 |
| 98 | GO:0009116: nucleoside metabolic process | 8.05E-03 |
| 99 | GO:0000027: ribosomal large subunit assembly | 8.05E-03 |
| 100 | GO:0006418: tRNA aminoacylation for protein translation | 8.63E-03 |
| 101 | GO:0006306: DNA methylation | 9.22E-03 |
| 102 | GO:0007005: mitochondrion organization | 9.82E-03 |
| 103 | GO:0009294: DNA mediated transformation | 1.04E-02 |
| 104 | GO:0009411: response to UV | 1.04E-02 |
| 105 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.04E-02 |
| 106 | GO:0008033: tRNA processing | 1.24E-02 |
| 107 | GO:0006662: glycerol ether metabolic process | 1.31E-02 |
| 108 | GO:0010197: polar nucleus fusion | 1.31E-02 |
| 109 | GO:0006342: chromatin silencing | 1.31E-02 |
| 110 | GO:0007018: microtubule-based movement | 1.37E-02 |
| 111 | GO:0006814: sodium ion transport | 1.37E-02 |
| 112 | GO:0016032: viral process | 1.59E-02 |
| 113 | GO:0009828: plant-type cell wall loosening | 1.74E-02 |
| 114 | GO:0051607: defense response to virus | 1.89E-02 |
| 115 | GO:0009816: defense response to bacterium, incompatible interaction | 2.05E-02 |
| 116 | GO:0009627: systemic acquired resistance | 2.13E-02 |
| 117 | GO:0055085: transmembrane transport | 2.31E-02 |
| 118 | GO:0048481: plant ovule development | 2.38E-02 |
| 119 | GO:0018298: protein-chromophore linkage | 2.38E-02 |
| 120 | GO:0008219: cell death | 2.38E-02 |
| 121 | GO:0006499: N-terminal protein myristoylation | 2.55E-02 |
| 122 | GO:0009631: cold acclimation | 2.64E-02 |
| 123 | GO:0009910: negative regulation of flower development | 2.64E-02 |
| 124 | GO:0045087: innate immune response | 2.81E-02 |
| 125 | GO:0009637: response to blue light | 2.81E-02 |
| 126 | GO:0034599: cellular response to oxidative stress | 2.90E-02 |
| 127 | GO:0030001: metal ion transport | 3.09E-02 |
| 128 | GO:0042542: response to hydrogen peroxide | 3.27E-02 |
| 129 | GO:0010114: response to red light | 3.37E-02 |
| 130 | GO:0006629: lipid metabolic process | 3.89E-02 |
| 131 | GO:0009664: plant-type cell wall organization | 3.96E-02 |
| 132 | GO:0006397: mRNA processing | 4.05E-02 |
| 133 | GO:0006364: rRNA processing | 4.17E-02 |
| 134 | GO:0009585: red, far-red light phototransduction | 4.17E-02 |
| 135 | GO:0006417: regulation of translation | 4.48E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 2 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
| 3 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 4 | GO:0015139: alpha-ketoglutarate transmembrane transporter activity | 0.00E+00 |
| 5 | GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.00E+00 |
| 6 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
| 7 | GO:0005048: signal sequence binding | 0.00E+00 |
| 8 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 9 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 10 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 11 | GO:0016631: enoyl-[acyl-carrier-protein] reductase activity | 0.00E+00 |
| 12 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 13 | GO:0019843: rRNA binding | 1.86E-21 |
| 14 | GO:0003735: structural constituent of ribosome | 3.38E-14 |
| 15 | GO:0051920: peroxiredoxin activity | 5.98E-07 |
| 16 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 1.16E-06 |
| 17 | GO:0016209: antioxidant activity | 1.50E-06 |
| 18 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.72E-06 |
| 19 | GO:0003729: mRNA binding | 1.72E-05 |
| 20 | GO:0003727: single-stranded RNA binding | 5.34E-05 |
| 21 | GO:0051082: unfolded protein binding | 1.36E-04 |
| 22 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.54E-04 |
| 23 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.54E-04 |
| 24 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 1.54E-04 |
| 25 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.54E-04 |
| 26 | GO:0004655: porphobilinogen synthase activity | 1.54E-04 |
| 27 | GO:0015367: oxoglutarate:malate antiporter activity | 3.51E-04 |
| 28 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.51E-04 |
| 29 | GO:0004817: cysteine-tRNA ligase activity | 3.51E-04 |
| 30 | GO:0000774: adenyl-nucleotide exchange factor activity | 3.51E-04 |
| 31 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.51E-04 |
| 32 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.51E-04 |
| 33 | GO:0008266: poly(U) RNA binding | 4.15E-04 |
| 34 | GO:0030267: glyoxylate reductase (NADP) activity | 5.75E-04 |
| 35 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 5.75E-04 |
| 36 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 5.75E-04 |
| 37 | GO:0017150: tRNA dihydrouridine synthase activity | 5.75E-04 |
| 38 | GO:0002161: aminoacyl-tRNA editing activity | 5.75E-04 |
| 39 | GO:0004148: dihydrolipoyl dehydrogenase activity | 5.75E-04 |
| 40 | GO:0051087: chaperone binding | 6.32E-04 |
| 41 | GO:0004601: peroxidase activity | 6.68E-04 |
| 42 | GO:0015131: oxaloacetate transmembrane transporter activity | 8.23E-04 |
| 43 | GO:0035197: siRNA binding | 8.23E-04 |
| 44 | GO:0016149: translation release factor activity, codon specific | 8.23E-04 |
| 45 | GO:0004550: nucleoside diphosphate kinase activity | 8.23E-04 |
| 46 | GO:0043023: ribosomal large subunit binding | 8.23E-04 |
| 47 | GO:0008097: 5S rRNA binding | 8.23E-04 |
| 48 | GO:0043495: protein anchor | 1.09E-03 |
| 49 | GO:0001053: plastid sigma factor activity | 1.09E-03 |
| 50 | GO:0004845: uracil phosphoribosyltransferase activity | 1.09E-03 |
| 51 | GO:0016836: hydro-lyase activity | 1.09E-03 |
| 52 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 1.09E-03 |
| 53 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.09E-03 |
| 54 | GO:0016987: sigma factor activity | 1.09E-03 |
| 55 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.38E-03 |
| 56 | GO:0004040: amidase activity | 1.38E-03 |
| 57 | GO:0004849: uridine kinase activity | 2.03E-03 |
| 58 | GO:0003886: DNA (cytosine-5-)-methyltransferase activity | 2.03E-03 |
| 59 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.03E-03 |
| 60 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.03E-03 |
| 61 | GO:0005525: GTP binding | 2.11E-03 |
| 62 | GO:0003723: RNA binding | 2.34E-03 |
| 63 | GO:0019899: enzyme binding | 2.39E-03 |
| 64 | GO:0016831: carboxy-lyase activity | 2.39E-03 |
| 65 | GO:0015140: malate transmembrane transporter activity | 2.39E-03 |
| 66 | GO:0004033: aldo-keto reductase (NADP) activity | 2.77E-03 |
| 67 | GO:0008312: 7S RNA binding | 2.77E-03 |
| 68 | GO:0003747: translation release factor activity | 3.58E-03 |
| 69 | GO:0047617: acyl-CoA hydrolase activity | 4.01E-03 |
| 70 | GO:0008047: enzyme activator activity | 4.46E-03 |
| 71 | GO:0044183: protein binding involved in protein folding | 4.92E-03 |
| 72 | GO:0000049: tRNA binding | 5.41E-03 |
| 73 | GO:0004521: endoribonuclease activity | 5.41E-03 |
| 74 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.56E-03 |
| 75 | GO:0003690: double-stranded DNA binding | 5.75E-03 |
| 76 | GO:0008081: phosphoric diester hydrolase activity | 5.91E-03 |
| 77 | GO:0005507: copper ion binding | 6.77E-03 |
| 78 | GO:0003924: GTPase activity | 8.26E-03 |
| 79 | GO:0004176: ATP-dependent peptidase activity | 9.22E-03 |
| 80 | GO:0022891: substrate-specific transmembrane transporter activity | 1.04E-02 |
| 81 | GO:0047134: protein-disulfide reductase activity | 1.17E-02 |
| 82 | GO:0004812: aminoacyl-tRNA ligase activity | 1.17E-02 |
| 83 | GO:0008080: N-acetyltransferase activity | 1.31E-02 |
| 84 | GO:0004791: thioredoxin-disulfide reductase activity | 1.37E-02 |
| 85 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.66E-02 |
| 86 | GO:0042802: identical protein binding | 1.74E-02 |
| 87 | GO:0008237: metallopeptidase activity | 1.81E-02 |
| 88 | GO:0008483: transaminase activity | 1.81E-02 |
| 89 | GO:0016168: chlorophyll binding | 2.05E-02 |
| 90 | GO:0008168: methyltransferase activity | 2.05E-02 |
| 91 | GO:0000287: magnesium ion binding | 2.09E-02 |
| 92 | GO:0003682: chromatin binding | 2.25E-02 |
| 93 | GO:0008236: serine-type peptidase activity | 2.29E-02 |
| 94 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.38E-02 |
| 95 | GO:0030145: manganese ion binding | 2.64E-02 |
| 96 | GO:0003746: translation elongation factor activity | 2.81E-02 |
| 97 | GO:0042803: protein homodimerization activity | 3.31E-02 |
| 98 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.56E-02 |
| 99 | GO:0003777: microtubule motor activity | 4.48E-02 |
| 100 | GO:0045735: nutrient reservoir activity | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005835: fatty acid synthase complex | 0.00E+00 |
| 2 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 0.00E+00 |
| 3 | GO:0009570: chloroplast stroma | 1.11E-58 |
| 4 | GO:0009507: chloroplast | 1.26E-58 |
| 5 | GO:0009941: chloroplast envelope | 3.81E-43 |
| 6 | GO:0009579: thylakoid | 3.65E-20 |
| 7 | GO:0005840: ribosome | 5.76E-14 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 2.26E-08 |
| 9 | GO:0009534: chloroplast thylakoid | 4.48E-07 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 8.82E-07 |
| 11 | GO:0031977: thylakoid lumen | 1.46E-06 |
| 12 | GO:0009536: plastid | 8.33E-06 |
| 13 | GO:0000311: plastid large ribosomal subunit | 9.45E-06 |
| 14 | GO:0009295: nucleoid | 1.52E-04 |
| 15 | GO:0000428: DNA-directed RNA polymerase complex | 1.54E-04 |
| 16 | GO:0009547: plastid ribosome | 1.54E-04 |
| 17 | GO:0030529: intracellular ribonucleoprotein complex | 1.79E-04 |
| 18 | GO:0080085: signal recognition particle, chloroplast targeting | 3.51E-04 |
| 19 | GO:0000312: plastid small ribosomal subunit | 4.15E-04 |
| 20 | GO:0042651: thylakoid membrane | 6.32E-04 |
| 21 | GO:0022626: cytosolic ribosome | 8.21E-04 |
| 22 | GO:0005719: nuclear euchromatin | 8.23E-04 |
| 23 | GO:0009706: chloroplast inner membrane | 1.11E-03 |
| 24 | GO:0005623: cell | 1.52E-03 |
| 25 | GO:0000793: condensed chromosome | 1.70E-03 |
| 26 | GO:0010319: stromule | 1.74E-03 |
| 27 | GO:0005759: mitochondrial matrix | 1.96E-03 |
| 28 | GO:0000794: condensed nuclear chromosome | 2.39E-03 |
| 29 | GO:0009533: chloroplast stromal thylakoid | 2.39E-03 |
| 30 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.16E-03 |
| 31 | GO:0005739: mitochondrion | 3.24E-03 |
| 32 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.58E-03 |
| 33 | GO:0015030: Cajal body | 4.01E-03 |
| 34 | GO:0009505: plant-type cell wall | 4.51E-03 |
| 35 | GO:0022625: cytosolic large ribosomal subunit | 5.37E-03 |
| 36 | GO:0009508: plastid chromosome | 5.91E-03 |
| 37 | GO:0031012: extracellular matrix | 5.91E-03 |
| 38 | GO:0030095: chloroplast photosystem II | 6.42E-03 |
| 39 | GO:0005875: microtubule associated complex | 7.49E-03 |
| 40 | GO:0009654: photosystem II oxygen evolving complex | 8.63E-03 |
| 41 | GO:0016020: membrane | 9.03E-03 |
| 42 | GO:0009532: plastid stroma | 9.22E-03 |
| 43 | GO:0015935: small ribosomal subunit | 9.22E-03 |
| 44 | GO:0048046: apoplast | 9.79E-03 |
| 45 | GO:0005871: kinesin complex | 1.17E-02 |
| 46 | GO:0009523: photosystem II | 1.44E-02 |
| 47 | GO:0019898: extrinsic component of membrane | 1.44E-02 |
| 48 | GO:0022627: cytosolic small ribosomal subunit | 1.82E-02 |
| 49 | GO:0046658: anchored component of plasma membrane | 1.82E-02 |
| 50 | GO:0009707: chloroplast outer membrane | 2.38E-02 |
| 51 | GO:0015934: large ribosomal subunit | 2.64E-02 |
| 52 | GO:0005622: intracellular | 3.51E-02 |