co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G08690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
2	GO:0006592: ornithine biosynthetic process	0.00E+00
3	GO:1900151: regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	0.00E+00
4	GO:0006593: ornithine catabolic process	0.00E+00
5	GO:0032780: negative regulation of ATPase activity	0.00E+00
6	GO:0006482: protein demethylation	0.00E+00
7	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
8	GO:0010360: negative regulation of anion channel activity	0.00E+00
9	GO:0006105: succinate metabolic process	0.00E+00
10	GO:0045022: early endosome to late endosome transport	0.00E+00
11	GO:0019484: beta-alanine catabolic process	0.00E+00
12	GO:0006983: ER overload response	0.00E+00
13	GO:0010477: response to sulfur dioxide	0.00E+00
14	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
15	GO:0033587: shikimate biosynthetic process	0.00E+00
16	GO:0048227: plasma membrane to endosome transport	0.00E+00
17	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
18	GO:0010398: xylogalacturonan metabolic process	0.00E+00
19	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
20	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
21	GO:0045185: maintenance of protein location	0.00E+00
22	GO:0019441: tryptophan catabolic process to kynurenine	2.86E-06
23	GO:0006014: D-ribose metabolic process	9.94E-05
24	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	9.94E-05
25	GO:0016559: peroxisome fission	2.28E-04
26	GO:0035266: meristem growth	2.48E-04
27	GO:0098710: guanine import across plasma membrane	2.48E-04
28	GO:0009450: gamma-aminobutyric acid catabolic process	2.48E-04
29	GO:0007292: female gamete generation	2.48E-04
30	GO:0019628: urate catabolic process	2.48E-04
31	GO:0006481: C-terminal protein methylation	2.48E-04
32	GO:0009865: pollen tube adhesion	2.48E-04
33	GO:0035344: hypoxanthine transport	2.48E-04
34	GO:1902361: mitochondrial pyruvate transmembrane transport	2.48E-04
35	GO:0006540: glutamate decarboxylation to succinate	2.48E-04
36	GO:0019544: arginine catabolic process to glutamate	2.48E-04
37	GO:0060211: regulation of nuclear-transcribed mRNA poly(A) tail shortening	2.48E-04
38	GO:0098721: uracil import across plasma membrane	2.48E-04
39	GO:0006144: purine nucleobase metabolic process	2.48E-04
40	GO:0098702: adenine import across plasma membrane	2.48E-04
41	GO:0043069: negative regulation of programmed cell death	4.74E-04
42	GO:0015914: phospholipid transport	5.49E-04
43	GO:0010033: response to organic substance	5.49E-04
44	GO:0006672: ceramide metabolic process	5.49E-04
45	GO:0043066: negative regulation of apoptotic process	5.49E-04
46	GO:0006212: uracil catabolic process	5.49E-04
47	GO:0019483: beta-alanine biosynthetic process	5.49E-04
48	GO:0006850: mitochondrial pyruvate transport	5.49E-04
49	GO:0015865: purine nucleotide transport	5.49E-04
50	GO:0051788: response to misfolded protein	5.49E-04
51	GO:0052542: defense response by callose deposition	5.49E-04
52	GO:0051258: protein polymerization	5.49E-04
53	GO:0009156: ribonucleoside monophosphate biosynthetic process	5.49E-04
54	GO:0007031: peroxisome organization	8.92E-04
55	GO:0060968: regulation of gene silencing	8.92E-04
56	GO:0010359: regulation of anion channel activity	8.92E-04
57	GO:0061158: 3'-UTR-mediated mRNA destabilization	8.92E-04
58	GO:0051646: mitochondrion localization	8.92E-04
59	GO:0051259: protein oligomerization	1.27E-03
60	GO:0006020: inositol metabolic process	1.27E-03
61	GO:0046902: regulation of mitochondrial membrane permeability	1.27E-03
62	GO:0001676: long-chain fatty acid metabolic process	1.27E-03
63	GO:0030433: ubiquitin-dependent ERAD pathway	1.44E-03
64	GO:0010222: stem vascular tissue pattern formation	1.70E-03
65	GO:0070534: protein K63-linked ubiquitination	1.70E-03
66	GO:0015994: chlorophyll metabolic process	1.70E-03
67	GO:1902584: positive regulation of response to water deprivation	1.70E-03
68	GO:0006536: glutamate metabolic process	1.70E-03
69	GO:0009165: nucleotide biosynthetic process	1.70E-03
70	GO:0055114: oxidation-reduction process	1.76E-03
71	GO:0048367: shoot system development	2.14E-03
72	GO:0030308: negative regulation of cell growth	2.17E-03
73	GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA	2.17E-03
74	GO:0046686: response to cadmium ion	2.29E-03
75	GO:0019252: starch biosynthetic process	2.47E-03
76	GO:0000302: response to reactive oxygen species	2.64E-03
77	GO:0006301: postreplication repair	2.67E-03
78	GO:0048827: phyllome development	2.67E-03
79	GO:0016070: RNA metabolic process	2.67E-03
80	GO:0048232: male gamete generation	2.67E-03
81	GO:0006555: methionine metabolic process	2.67E-03
82	GO:0043248: proteasome assembly	2.67E-03
83	GO:0070814: hydrogen sulfide biosynthetic process	2.67E-03
84	GO:1902456: regulation of stomatal opening	2.67E-03
85	GO:0006796: phosphate-containing compound metabolic process	2.67E-03
86	GO:1900425: negative regulation of defense response to bacterium	2.67E-03
87	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.67E-03
88	GO:0010337: regulation of salicylic acid metabolic process	2.67E-03
89	GO:0035435: phosphate ion transmembrane transport	2.67E-03
90	GO:0006561: proline biosynthetic process	2.67E-03
91	GO:0046777: protein autophosphorylation	2.86E-03
92	GO:0019509: L-methionine salvage from methylthioadenosine	3.21E-03
93	GO:0048280: vesicle fusion with Golgi apparatus	3.21E-03
94	GO:0050790: regulation of catalytic activity	3.79E-03
95	GO:0006955: immune response	3.79E-03
96	GO:0009395: phospholipid catabolic process	3.79E-03
97	GO:0070370: cellular heat acclimation	3.79E-03
98	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.79E-03
99	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.79E-03
100	GO:0006102: isocitrate metabolic process	4.39E-03
101	GO:0009061: anaerobic respiration	4.39E-03
102	GO:0009819: drought recovery	4.39E-03
103	GO:0006605: protein targeting	4.39E-03
104	GO:0010078: maintenance of root meristem identity	4.39E-03
105	GO:2000070: regulation of response to water deprivation	4.39E-03
106	GO:0009657: plastid organization	5.03E-03
107	GO:0006526: arginine biosynthetic process	5.03E-03
108	GO:0043562: cellular response to nitrogen levels	5.03E-03
109	GO:0010150: leaf senescence	5.21E-03
110	GO:0006499: N-terminal protein myristoylation	5.48E-03
111	GO:0009821: alkaloid biosynthetic process	5.70E-03
112	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.70E-03
113	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	5.70E-03
114	GO:0006098: pentose-phosphate shunt	5.70E-03
115	GO:0090333: regulation of stomatal closure	5.70E-03
116	GO:0045087: innate immune response	6.30E-03
117	GO:0008202: steroid metabolic process	6.40E-03
118	GO:0006896: Golgi to vacuole transport	7.12E-03
119	GO:0006535: cysteine biosynthetic process from serine	7.12E-03
120	GO:0000103: sulfate assimilation	7.12E-03
121	GO:0048829: root cap development	7.12E-03
122	GO:0006631: fatty acid metabolic process	7.49E-03
123	GO:0010015: root morphogenesis	7.88E-03
124	GO:0000038: very long-chain fatty acid metabolic process	7.88E-03
125	GO:0016485: protein processing	7.88E-03
126	GO:0051707: response to other organism	8.13E-03
127	GO:0071365: cellular response to auxin stimulus	8.66E-03
128	GO:0000266: mitochondrial fission	8.66E-03
129	GO:0006790: sulfur compound metabolic process	8.66E-03
130	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.66E-03
131	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	9.47E-03
132	GO:0006508: proteolysis	9.93E-03
133	GO:0042538: hyperosmotic salinity response	1.02E-02
134	GO:0009266: response to temperature stimulus	1.03E-02
135	GO:0034605: cellular response to heat	1.03E-02
136	GO:0006541: glutamine metabolic process	1.03E-02
137	GO:0009933: meristem structural organization	1.03E-02
138	GO:0006446: regulation of translational initiation	1.03E-02
139	GO:0010053: root epidermal cell differentiation	1.12E-02
140	GO:0010167: response to nitrate	1.12E-02
141	GO:0010039: response to iron ion	1.12E-02
142	GO:0005985: sucrose metabolic process	1.12E-02
143	GO:0090351: seedling development	1.12E-02
144	GO:0019344: cysteine biosynthetic process	1.30E-02
145	GO:0009116: nucleoside metabolic process	1.30E-02
146	GO:2000377: regulation of reactive oxygen species metabolic process	1.30E-02
147	GO:0051302: regulation of cell division	1.39E-02
148	GO:0009626: plant-type hypersensitive response	1.39E-02
149	GO:0031408: oxylipin biosynthetic process	1.49E-02
150	GO:0045454: cell redox homeostasis	1.50E-02
151	GO:0007005: mitochondrion organization	1.59E-02
152	GO:0018105: peptidyl-serine phosphorylation	1.61E-02
153	GO:0071215: cellular response to abscisic acid stimulus	1.69E-02
154	GO:0006511: ubiquitin-dependent protein catabolic process	1.77E-02
155	GO:0016117: carotenoid biosynthetic process	1.90E-02
156	GO:0042147: retrograde transport, endosome to Golgi	1.90E-02
157	GO:0048364: root development	2.07E-02
158	GO:0045489: pectin biosynthetic process	2.12E-02
159	GO:0010154: fruit development	2.12E-02
160	GO:0008152: metabolic process	2.22E-02
161	GO:0006623: protein targeting to vacuole	2.34E-02
162	GO:0010183: pollen tube guidance	2.34E-02
163	GO:0009749: response to glucose	2.34E-02
164	GO:0002229: defense response to oomycetes	2.46E-02
165	GO:0006891: intra-Golgi vesicle-mediated transport	2.46E-02
166	GO:0006635: fatty acid beta-oxidation	2.46E-02
167	GO:0009630: gravitropism	2.58E-02
168	GO:0007264: small GTPase mediated signal transduction	2.58E-02
169	GO:0016032: viral process	2.58E-02
170	GO:0006464: cellular protein modification process	2.82E-02
171	GO:0006914: autophagy	2.82E-02
172	GO:0010286: heat acclimation	2.94E-02
173	GO:0071805: potassium ion transmembrane transport	2.94E-02
174	GO:0006468: protein phosphorylation	2.99E-02
175	GO:0051607: defense response to virus	3.07E-02
176	GO:0009651: response to salt stress	3.09E-02
177	GO:0006979: response to oxidative stress	3.22E-02
178	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.32E-02
179	GO:0010029: regulation of seed germination	3.32E-02
180	GO:0009816: defense response to bacterium, incompatible interaction	3.32E-02
181	GO:0042128: nitrate assimilation	3.46E-02
182	GO:0006888: ER to Golgi vesicle-mediated transport	3.59E-02
183	GO:0006950: response to stress	3.59E-02
184	GO:0009738: abscisic acid-activated signaling pathway	3.84E-02
185	GO:0008219: cell death	3.86E-02
186	GO:0010311: lateral root formation	4.00E-02
187	GO:0010043: response to zinc ion	4.28E-02
188	GO:0007568: aging	4.28E-02
189	GO:0010119: regulation of stomatal movement	4.28E-02
190	GO:0035556: intracellular signal transduction	4.28E-02
191	GO:0009631: cold acclimation	4.28E-02
192	GO:0016310: phosphorylation	4.55E-02
193	GO:0016051: carbohydrate biosynthetic process	4.56E-02
194	GO:0006099: tricarboxylic acid cycle	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
2	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
3	GO:0052642: lysophosphatidic acid phosphatase activity	0.00E+00
4	GO:0048244: phytanoyl-CoA dioxygenase activity	0.00E+00
5	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	0.00E+00
6	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
7	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
8	GO:0004846: urate oxidase activity	0.00E+00
9	GO:0051723: protein methylesterase activity	0.00E+00
10	GO:0004157: dihydropyrimidinase activity	0.00E+00
11	GO:0008777: acetylornithine deacetylase activity	0.00E+00
12	GO:0008482: sulfite oxidase activity	0.00E+00
13	GO:0042030: ATPase inhibitor activity	0.00E+00
14	GO:0004061: arylformamidase activity	2.86E-06
15	GO:0005496: steroid binding	6.78E-05
16	GO:0036402: proteasome-activating ATPase activity	9.94E-05
17	GO:0004747: ribokinase activity	1.37E-04
18	GO:0008235: metalloexopeptidase activity	1.80E-04
19	GO:0008865: fructokinase activity	2.28E-04
20	GO:0004671: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	2.48E-04
21	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.48E-04
22	GO:0015208: guanine transmembrane transporter activity	2.48E-04
23	GO:0015294: solute:cation symporter activity	2.48E-04
24	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.48E-04
25	GO:0003867: 4-aminobutyrate transaminase activity	2.48E-04
26	GO:0015207: adenine transmembrane transporter activity	2.48E-04
27	GO:0030544: Hsp70 protein binding	2.48E-04
28	GO:0019707: protein-cysteine S-acyltransferase activity	2.48E-04
29	GO:0004177: aminopeptidase activity	5.47E-04
30	GO:0004750: ribulose-phosphate 3-epimerase activity	5.49E-04
31	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	5.49E-04
32	GO:0004450: isocitrate dehydrogenase (NADP+) activity	5.49E-04
33	GO:0005093: Rab GDP-dissociation inhibitor activity	8.92E-04
34	GO:0008430: selenium binding	8.92E-04
35	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	8.92E-04
36	GO:0005047: signal recognition particle binding	8.92E-04
37	GO:0017025: TBP-class protein binding	8.92E-04
38	GO:0050833: pyruvate transmembrane transporter activity	8.92E-04
39	GO:0004383: guanylate cyclase activity	8.92E-04
40	GO:0004781: sulfate adenylyltransferase (ATP) activity	8.92E-04
41	GO:0016805: dipeptidase activity	8.92E-04
42	GO:0004300: enoyl-CoA hydratase activity	1.27E-03
43	GO:0004749: ribose phosphate diphosphokinase activity	1.27E-03
44	GO:0008276: protein methyltransferase activity	1.27E-03
45	GO:0001653: peptide receptor activity	1.27E-03
46	GO:0004792: thiosulfate sulfurtransferase activity	1.27E-03
47	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.27E-03
48	GO:0000339: RNA cap binding	1.27E-03
49	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.70E-03
50	GO:0015210: uracil transmembrane transporter activity	1.70E-03
51	GO:0009916: alternative oxidase activity	1.70E-03
52	GO:0008234: cysteine-type peptidase activity	1.89E-03
53	GO:0030151: molybdenum ion binding	2.17E-03
54	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.17E-03
55	GO:0005471: ATP:ADP antiporter activity	2.17E-03
56	GO:0004526: ribonuclease P activity	2.67E-03
57	GO:0035252: UDP-xylosyltransferase activity	2.67E-03
58	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.21E-03
59	GO:0004124: cysteine synthase activity	3.21E-03
60	GO:0003730: mRNA 3'-UTR binding	3.21E-03
61	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.79E-03
62	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.79E-03
63	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.79E-03
64	GO:0051213: dioxygenase activity	3.81E-03
65	GO:0030170: pyridoxal phosphate binding	3.95E-03
66	GO:0004674: protein serine/threonine kinase activity	4.25E-03
67	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.26E-03
68	GO:0047893: flavonol 3-O-glucosyltransferase activity	4.39E-03
69	GO:0016301: kinase activity	4.47E-03
70	GO:0004683: calmodulin-dependent protein kinase activity	4.49E-03
71	GO:0008142: oxysterol binding	5.03E-03
72	GO:0016491: oxidoreductase activity	5.15E-03
73	GO:0071949: FAD binding	5.70E-03
74	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.70E-03
75	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	6.40E-03
76	GO:0047617: acyl-CoA hydrolase activity	6.40E-03
77	GO:0046872: metal ion binding	6.92E-03
78	GO:0008171: O-methyltransferase activity	7.12E-03
79	GO:0008794: arsenate reductase (glutaredoxin) activity	7.88E-03
80	GO:0005315: inorganic phosphate transmembrane transporter activity	9.47E-03
81	GO:0031624: ubiquitin conjugating enzyme binding	1.03E-02
82	GO:0008233: peptidase activity	1.17E-02
83	GO:0061630: ubiquitin protein ligase activity	1.27E-02
84	GO:0031418: L-ascorbic acid binding	1.30E-02
85	GO:0043130: ubiquitin binding	1.30E-02
86	GO:0005515: protein binding	1.36E-02
87	GO:0043424: protein histidine kinase binding	1.39E-02
88	GO:0015079: potassium ion transmembrane transporter activity	1.39E-02
89	GO:0008408: 3'-5' exonuclease activity	1.49E-02
90	GO:0035251: UDP-glucosyltransferase activity	1.49E-02
91	GO:0004176: ATP-dependent peptidase activity	1.49E-02
92	GO:0015035: protein disulfide oxidoreductase activity	1.61E-02
93	GO:0003727: single-stranded RNA binding	1.79E-02
94	GO:0003924: GTPase activity	1.96E-02
95	GO:0005516: calmodulin binding	2.06E-02
96	GO:0008080: N-acetyltransferase activity	2.12E-02
97	GO:0009055: electron carrier activity	2.14E-02
98	GO:0005524: ATP binding	2.25E-02
99	GO:0004872: receptor activity	2.34E-02
100	GO:0004197: cysteine-type endopeptidase activity	2.58E-02
101	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.70E-02
102	GO:0008237: metallopeptidase activity	2.94E-02
103	GO:0016597: amino acid binding	3.07E-02
104	GO:0016887: ATPase activity	3.39E-02
105	GO:0042802: identical protein binding	3.44E-02
106	GO:0008236: serine-type peptidase activity	3.72E-02
107	GO:0005096: GTPase activator activity	4.00E-02
108	GO:0000287: magnesium ion binding	4.11E-02
109	GO:0016788: hydrolase activity, acting on ester bonds	4.26E-02
110	GO:0030145: manganese ion binding	4.28E-02
111	GO:0050897: cobalt ion binding	4.28E-02
112	GO:0003746: translation elongation factor activity	4.56E-02
113	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.56E-02
114	GO:0003993: acid phosphatase activity	4.71E-02
115	GO:0000149: SNARE binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0010009: cytoplasmic side of endosome membrane	0.00E+00
3	GO:0046862: chromoplast membrane	0.00E+00
4	GO:0005783: endoplasmic reticulum	4.54E-06
5	GO:0005777: peroxisome	4.37E-05
6	GO:0031597: cytosolic proteasome complex	1.37E-04
7	GO:0031595: nuclear proteasome complex	1.80E-04
8	GO:0000502: proteasome complex	2.35E-04
9	GO:0005773: vacuole	2.65E-04
10	GO:0005778: peroxisomal membrane	3.80E-04
11	GO:0008540: proteasome regulatory particle, base subcomplex	4.05E-04
12	GO:0005782: peroxisomal matrix	8.92E-04
13	GO:0000323: lytic vacuole	1.27E-03
14	GO:0031372: UBC13-MMS2 complex	1.70E-03
15	GO:0030140: trans-Golgi network transport vesicle	2.67E-03
16	GO:0005886: plasma membrane	3.83E-03
17	GO:0012507: ER to Golgi transport vesicle membrane	4.39E-03
18	GO:0031305: integral component of mitochondrial inner membrane	4.39E-03
19	GO:0005759: mitochondrial matrix	4.62E-03
20	GO:0005779: integral component of peroxisomal membrane	5.03E-03
21	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.03E-03
22	GO:0005794: Golgi apparatus	5.49E-03
23	GO:0031901: early endosome membrane	5.70E-03
24	GO:0005737: cytoplasm	6.26E-03
25	GO:0005789: endoplasmic reticulum membrane	6.89E-03
26	GO:0031902: late endosome membrane	7.49E-03
27	GO:0090404: pollen tube tip	7.88E-03
28	GO:0016021: integral component of membrane	8.78E-03
29	GO:0005764: lysosome	1.03E-02
30	GO:0005750: mitochondrial respiratory chain complex III	1.03E-02
31	GO:0005769: early endosome	1.21E-02
32	GO:0005774: vacuolar membrane	1.28E-02
33	GO:0070469: respiratory chain	1.39E-02
34	GO:0005741: mitochondrial outer membrane	1.49E-02
35	GO:0005829: cytosol	1.98E-02
36	GO:0005770: late endosome	2.12E-02
37	GO:0005802: trans-Golgi network	2.26E-02
38	GO:0005768: endosome	2.73E-02
39	GO:0000932: P-body	3.19E-02
40	GO:0000151: ubiquitin ligase complex	3.86E-02
41	GO:0000325: plant-type vacuole	4.28E-02
42	GO:0016020: membrane	4.47E-02