Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G08680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0008064: regulation of actin polymerization or depolymerization0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0051493: regulation of cytoskeleton organization0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:1905499: trichome papilla formation0.00E+00
9GO:0032544: plastid translation1.20E-05
10GO:0071555: cell wall organization2.79E-05
11GO:0015976: carbon utilization6.10E-05
12GO:0006183: GTP biosynthetic process6.10E-05
13GO:0010067: procambium histogenesis1.90E-04
14GO:0042335: cuticle development2.77E-04
15GO:0000413: protein peptidyl-prolyl isomerization2.77E-04
16GO:0009735: response to cytokinin2.90E-04
17GO:0060627: regulation of vesicle-mediated transport3.07E-04
18GO:0010442: guard cell morphogenesis3.07E-04
19GO:0042371: vitamin K biosynthetic process3.07E-04
20GO:0010583: response to cyclopentenone4.42E-04
21GO:0042761: very long-chain fatty acid biosynthetic process5.47E-04
22GO:0007267: cell-cell signaling5.63E-04
23GO:0009658: chloroplast organization6.38E-04
24GO:0006949: syncytium formation6.38E-04
25GO:2000123: positive regulation of stomatal complex development6.71E-04
26GO:0010270: photosystem II oxygen evolving complex assembly6.71E-04
27GO:0010424: DNA methylation on cytosine within a CG sequence6.71E-04
28GO:0052541: plant-type cell wall cellulose metabolic process6.71E-04
29GO:0006695: cholesterol biosynthetic process6.71E-04
30GO:0010069: zygote asymmetric cytokinesis in embryo sac6.71E-04
31GO:0006816: calcium ion transport7.36E-04
32GO:0010207: photosystem II assembly1.07E-03
33GO:0010020: chloroplast fission1.07E-03
34GO:0010223: secondary shoot formation1.07E-03
35GO:0006065: UDP-glucuronate biosynthetic process1.09E-03
36GO:0090506: axillary shoot meristem initiation1.09E-03
37GO:0010253: UDP-rhamnose biosynthetic process1.09E-03
38GO:0010025: wax biosynthetic process1.33E-03
39GO:0007010: cytoskeleton organization1.47E-03
40GO:0006631: fatty acid metabolic process1.52E-03
41GO:0007231: osmosensory signaling pathway1.56E-03
42GO:0006241: CTP biosynthetic process1.56E-03
43GO:0019048: modulation by virus of host morphology or physiology1.56E-03
44GO:0006424: glutamyl-tRNA aminoacylation1.56E-03
45GO:0006165: nucleoside diphosphate phosphorylation1.56E-03
46GO:0006228: UTP biosynthetic process1.56E-03
47GO:0031048: chromatin silencing by small RNA1.56E-03
48GO:0043572: plastid fission1.56E-03
49GO:0010088: phloem development1.56E-03
50GO:2001141: regulation of RNA biosynthetic process1.56E-03
51GO:0042742: defense response to bacterium1.72E-03
52GO:0042546: cell wall biogenesis1.77E-03
53GO:0006412: translation1.79E-03
54GO:0015689: molybdate ion transport2.09E-03
55GO:0051322: anaphase2.09E-03
56GO:0009765: photosynthesis, light harvesting2.09E-03
57GO:0006085: acetyl-CoA biosynthetic process2.09E-03
58GO:2000122: negative regulation of stomatal complex development2.09E-03
59GO:0033500: carbohydrate homeostasis2.09E-03
60GO:2000038: regulation of stomatal complex development2.09E-03
61GO:0042991: transcription factor import into nucleus2.09E-03
62GO:0000919: cell plate assembly2.09E-03
63GO:0051567: histone H3-K9 methylation2.09E-03
64GO:0010037: response to carbon dioxide2.09E-03
65GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.12E-03
66GO:0009294: DNA mediated transformation2.12E-03
67GO:0001944: vasculature development2.12E-03
68GO:0010089: xylem development2.31E-03
69GO:0019722: calcium-mediated signaling2.31E-03
70GO:0016117: carotenoid biosynthetic process2.50E-03
71GO:0016123: xanthophyll biosynthetic process2.67E-03
72GO:0006665: sphingolipid metabolic process2.67E-03
73GO:0010375: stomatal complex patterning2.67E-03
74GO:0032543: mitochondrial translation2.67E-03
75GO:0006564: L-serine biosynthetic process2.67E-03
76GO:0048359: mucilage metabolic process involved in seed coat development2.67E-03
77GO:0016120: carotene biosynthetic process2.67E-03
78GO:0000271: polysaccharide biosynthetic process2.70E-03
79GO:0042254: ribosome biogenesis3.06E-03
80GO:0010405: arabinogalactan protein metabolic process3.30E-03
81GO:0042549: photosystem II stabilization3.30E-03
82GO:0006828: manganese ion transport3.30E-03
83GO:0016458: gene silencing3.30E-03
84GO:0006014: D-ribose metabolic process3.30E-03
85GO:0018258: protein O-linked glycosylation via hydroxyproline3.30E-03
86GO:0007264: small GTPase mediated signal transduction3.83E-03
87GO:0010555: response to mannitol3.97E-03
88GO:0009955: adaxial/abaxial pattern specification3.97E-03
89GO:0042372: phylloquinone biosynthetic process3.97E-03
90GO:0006694: steroid biosynthetic process3.97E-03
91GO:0048280: vesicle fusion with Golgi apparatus3.97E-03
92GO:1901259: chloroplast rRNA processing3.97E-03
93GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.35E-03
94GO:0009828: plant-type cell wall loosening4.35E-03
95GO:0048528: post-embryonic root development4.68E-03
96GO:0071669: plant-type cell wall organization or biogenesis4.68E-03
97GO:0000910: cytokinesis4.90E-03
98GO:0015979: photosynthesis5.06E-03
99GO:0045454: cell redox homeostasis5.44E-03
100GO:0010928: regulation of auxin mediated signaling pathway5.44E-03
101GO:0009642: response to light intensity5.44E-03
102GO:0010411: xyloglucan metabolic process6.11E-03
103GO:0015995: chlorophyll biosynthetic process6.11E-03
104GO:0009808: lignin metabolic process6.23E-03
105GO:0009932: cell tip growth6.23E-03
106GO:0071482: cellular response to light stimulus6.23E-03
107GO:0006869: lipid transport6.26E-03
108GO:0030244: cellulose biosynthetic process6.77E-03
109GO:0006633: fatty acid biosynthetic process6.85E-03
110GO:0015780: nucleotide-sugar transport7.07E-03
111GO:0045337: farnesyl diphosphate biosynthetic process7.07E-03
112GO:0033384: geranyl diphosphate biosynthetic process7.07E-03
113GO:0006783: heme biosynthetic process7.07E-03
114GO:0048589: developmental growth7.07E-03
115GO:0009832: plant-type cell wall biogenesis7.11E-03
116GO:0009834: plant-type secondary cell wall biogenesis7.47E-03
117GO:0006779: porphyrin-containing compound biosynthetic process7.94E-03
118GO:0006349: regulation of gene expression by genetic imprinting7.94E-03
119GO:0016051: carbohydrate biosynthetic process8.59E-03
120GO:0043069: negative regulation of programmed cell death8.84E-03
121GO:0010192: mucilage biosynthetic process8.84E-03
122GO:0006896: Golgi to vacuole transport8.84E-03
123GO:0006782: protoporphyrinogen IX biosynthetic process8.84E-03
124GO:0030422: production of siRNA involved in RNA interference8.84E-03
125GO:0010216: maintenance of DNA methylation9.79E-03
126GO:0009773: photosynthetic electron transport in photosystem I9.79E-03
127GO:0006352: DNA-templated transcription, initiation9.79E-03
128GO:0018119: peptidyl-cysteine S-nitrosylation9.79E-03
129GO:0006415: translational termination9.79E-03
130GO:0006790: sulfur compound metabolic process1.08E-02
131GO:0006820: anion transport1.08E-02
132GO:0009826: unidimensional cell growth1.28E-02
133GO:0046854: phosphatidylinositol phosphorylation1.39E-02
134GO:0070588: calcium ion transmembrane transport1.39E-02
135GO:0009664: plant-type cell wall organization1.40E-02
136GO:0009833: plant-type primary cell wall biogenesis1.50E-02
137GO:0006071: glycerol metabolic process1.50E-02
138GO:0009736: cytokinin-activated signaling pathway1.50E-02
139GO:0006813: potassium ion transport1.50E-02
140GO:0019344: cysteine biosynthetic process1.62E-02
141GO:0000027: ribosomal large subunit assembly1.62E-02
142GO:0006418: tRNA aminoacylation for protein translation1.74E-02
143GO:0010026: trichome differentiation1.74E-02
144GO:0043622: cortical microtubule organization1.74E-02
145GO:0007017: microtubule-based process1.74E-02
146GO:0048367: shoot system development1.83E-02
147GO:0061077: chaperone-mediated protein folding1.86E-02
148GO:0006306: DNA methylation1.86E-02
149GO:0080092: regulation of pollen tube growth1.98E-02
150GO:0030245: cellulose catabolic process1.98E-02
151GO:0009411: response to UV2.11E-02
152GO:0055114: oxidation-reduction process2.15E-02
153GO:0010214: seed coat development2.24E-02
154GO:0010091: trichome branching2.24E-02
155GO:0042147: retrograde transport, endosome to Golgi2.37E-02
156GO:0010087: phloem or xylem histogenesis2.50E-02
157GO:0000226: microtubule cytoskeleton organization2.50E-02
158GO:0006457: protein folding2.61E-02
159GO:0006342: chromatin silencing2.64E-02
160GO:0008360: regulation of cell shape2.64E-02
161GO:0009958: positive gravitropism2.64E-02
162GO:0045489: pectin biosynthetic process2.64E-02
163GO:0007018: microtubule-based movement2.78E-02
164GO:0006629: lipid metabolic process2.89E-02
165GO:0006623: protein targeting to vacuole2.92E-02
166GO:0048825: cotyledon development2.92E-02
167GO:0019252: starch biosynthetic process2.92E-02
168GO:0016132: brassinosteroid biosynthetic process3.07E-02
169GO:0006891: intra-Golgi vesicle-mediated transport3.07E-02
170GO:1901657: glycosyl compound metabolic process3.36E-02
171GO:0071805: potassium ion transmembrane transport3.67E-02
172GO:0045490: pectin catabolic process3.69E-02
173GO:0051607: defense response to virus3.83E-02
174GO:0010027: thylakoid membrane organization3.98E-02
175GO:0009816: defense response to bacterium, incompatible interaction4.15E-02
176GO:0006888: ER to Golgi vesicle-mediated transport4.48E-02
177GO:0016049: cell growth4.64E-02
178GO:0048481: plant ovule development4.81E-02
179GO:0009817: defense response to fungus, incompatible interaction4.81E-02
180GO:0048767: root hair elongation4.98E-02
181GO:0000160: phosphorelay signal transduction system4.98E-02
182GO:0009813: flavonoid biosynthetic process4.98E-02
RankGO TermAdjusted P value
1GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
2GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
3GO:0050614: delta24-sterol reductase activity0.00E+00
4GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
7GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
12GO:0051920: peroxiredoxin activity2.54E-08
13GO:0019843: rRNA binding6.27E-08
14GO:0016209: antioxidant activity9.03E-08
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.10E-05
16GO:0051753: mannan synthase activity1.90E-04
17GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.90E-04
18GO:0003735: structural constituent of ribosome3.02E-04
19GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.07E-04
20GO:0010489: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity3.07E-04
21GO:0004560: alpha-L-fucosidase activity3.07E-04
22GO:0010490: UDP-4-keto-rhamnose-4-keto-reductase activity3.07E-04
23GO:0080132: fatty acid alpha-hydroxylase activity3.07E-04
24GO:0009374: biotin binding3.07E-04
25GO:0004655: porphobilinogen synthase activity3.07E-04
26GO:0008460: dTDP-glucose 4,6-dehydratase activity6.71E-04
27GO:0004617: phosphoglycerate dehydrogenase activity6.71E-04
28GO:0003938: IMP dehydrogenase activity6.71E-04
29GO:0010280: UDP-L-rhamnose synthase activity6.71E-04
30GO:0050377: UDP-glucose 4,6-dehydratase activity6.71E-04
31GO:0005089: Rho guanyl-nucleotide exchange factor activity7.36E-04
32GO:0004089: carbonate dehydratase activity9.50E-04
33GO:0003979: UDP-glucose 6-dehydrogenase activity1.09E-03
34GO:0070330: aromatase activity1.09E-03
35GO:0005504: fatty acid binding1.09E-03
36GO:0002161: aminoacyl-tRNA editing activity1.09E-03
37GO:0030267: glyoxylate reductase (NADP) activity1.09E-03
38GO:0003878: ATP citrate synthase activity1.56E-03
39GO:0016149: translation release factor activity, codon specific1.56E-03
40GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.56E-03
41GO:0004550: nucleoside diphosphate kinase activity1.56E-03
42GO:0035197: siRNA binding1.56E-03
43GO:0008017: microtubule binding1.64E-03
44GO:0004176: ATP-dependent peptidase activity1.78E-03
45GO:0004659: prenyltransferase activity2.09E-03
46GO:0001053: plastid sigma factor activity2.09E-03
47GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.09E-03
48GO:0016987: sigma factor activity2.09E-03
49GO:0045430: chalcone isomerase activity2.09E-03
50GO:0046527: glucosyltransferase activity2.09E-03
51GO:0015098: molybdate ion transmembrane transporter activity2.09E-03
52GO:0016760: cellulose synthase (UDP-forming) activity2.12E-03
53GO:0003989: acetyl-CoA carboxylase activity2.67E-03
54GO:0008381: mechanically-gated ion channel activity2.67E-03
55GO:0009922: fatty acid elongase activity2.67E-03
56GO:0018685: alkane 1-monooxygenase activity2.67E-03
57GO:0016773: phosphotransferase activity, alcohol group as acceptor2.67E-03
58GO:0004040: amidase activity2.67E-03
59GO:0004601: peroxidase activity2.98E-03
60GO:1990714: hydroxyproline O-galactosyltransferase activity3.30E-03
61GO:0016208: AMP binding3.30E-03
62GO:0016762: xyloglucan:xyloglucosyl transferase activity3.59E-03
63GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.97E-03
64GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.97E-03
65GO:0004747: ribokinase activity3.97E-03
66GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.97E-03
67GO:0016759: cellulose synthase activity4.35E-03
68GO:0016722: oxidoreductase activity, oxidizing metal ions4.62E-03
69GO:0005200: structural constituent of cytoskeleton4.62E-03
70GO:0008237: metallopeptidase activity4.62E-03
71GO:0052747: sinapyl alcohol dehydrogenase activity5.44E-03
72GO:0008865: fructokinase activity5.44E-03
73GO:0016798: hydrolase activity, acting on glycosyl bonds6.11E-03
74GO:0003747: translation release factor activity7.07E-03
75GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.07E-03
76GO:0004337: geranyltranstransferase activity7.07E-03
77GO:0008889: glycerophosphodiester phosphodiesterase activity7.07E-03
78GO:0003924: GTPase activity7.48E-03
79GO:0005384: manganese ion transmembrane transporter activity7.94E-03
80GO:0004161: dimethylallyltranstransferase activity9.79E-03
81GO:0047372: acylglycerol lipase activity9.79E-03
82GO:0004521: endoribonuclease activity1.08E-02
83GO:0000049: tRNA binding1.08E-02
84GO:0045551: cinnamyl-alcohol dehydrogenase activity1.08E-02
85GO:0015095: magnesium ion transmembrane transporter activity1.18E-02
86GO:0005262: calcium channel activity1.18E-02
87GO:0004565: beta-galactosidase activity1.18E-02
88GO:0008289: lipid binding1.23E-02
89GO:0051287: NAD binding1.35E-02
90GO:0004857: enzyme inhibitor activity1.62E-02
91GO:0005528: FK506 binding1.62E-02
92GO:0003777: microtubule motor activity1.66E-02
93GO:0015079: potassium ion transmembrane transporter activity1.74E-02
94GO:0008324: cation transmembrane transporter activity1.74E-02
95GO:0019706: protein-cysteine S-palmitoyltransferase activity1.86E-02
96GO:0033612: receptor serine/threonine kinase binding1.86E-02
97GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.98E-02
98GO:0003824: catalytic activity2.01E-02
99GO:0052689: carboxylic ester hydrolase activity2.01E-02
100GO:0030599: pectinesterase activity2.01E-02
101GO:0030570: pectate lyase activity2.11E-02
102GO:0008810: cellulase activity2.11E-02
103GO:0008514: organic anion transmembrane transporter activity2.24E-02
104GO:0004812: aminoacyl-tRNA ligase activity2.37E-02
105GO:0005102: receptor binding2.37E-02
106GO:0016301: kinase activity2.41E-02
107GO:0016758: transferase activity, transferring hexosyl groups2.61E-02
108GO:0005199: structural constituent of cell wall2.64E-02
109GO:0005524: ATP binding2.66E-02
110GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.68E-02
111GO:0019901: protein kinase binding2.92E-02
112GO:0009055: electron carrier activity3.15E-02
113GO:0005516: calmodulin binding3.25E-02
114GO:0004672: protein kinase activity3.27E-02
115GO:0000156: phosphorelay response regulator activity3.36E-02
116GO:0005525: GTP binding3.70E-02
117GO:0016597: amino acid binding3.83E-02
118GO:0009931: calcium-dependent protein serine/threonine kinase activity4.31E-02
119GO:0005509: calcium ion binding4.44E-02
120GO:0004683: calmodulin-dependent protein kinase activity4.48E-02
121GO:0102483: scopolin beta-glucosidase activity4.48E-02
122GO:0042802: identical protein binding4.68E-02
RankGO TermAdjusted P value
1GO:0070971: endoplasmic reticulum exit site0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009570: chloroplast stroma8.51E-16
4GO:0009941: chloroplast envelope1.01E-13
5GO:0009507: chloroplast9.27E-11
6GO:0046658: anchored component of plasma membrane1.32E-10
7GO:0031225: anchored component of membrane1.39E-10
8GO:0048046: apoplast2.95E-10
9GO:0009579: thylakoid3.37E-09
10GO:0031977: thylakoid lumen3.58E-08
11GO:0009543: chloroplast thylakoid lumen6.27E-08
12GO:0005886: plasma membrane5.11E-07
13GO:0009505: plant-type cell wall1.98E-06
14GO:0009535: chloroplast thylakoid membrane6.21E-06
15GO:0009534: chloroplast thylakoid2.38E-05
16GO:0005618: cell wall8.90E-05
17GO:0005874: microtubule1.74E-04
18GO:0009923: fatty acid elongase complex3.07E-04
19GO:0019898: extrinsic component of membrane3.71E-04
20GO:0010319: stromule5.63E-04
21GO:0000311: plastid large ribosomal subunit8.40E-04
22GO:0030095: chloroplast photosystem II1.07E-03
23GO:0000139: Golgi membrane1.08E-03
24GO:0010330: cellulose synthase complex1.09E-03
25GO:0009317: acetyl-CoA carboxylase complex1.09E-03
26GO:0016020: membrane1.19E-03
27GO:0005875: microtubule associated complex1.33E-03
28GO:0005719: nuclear euchromatin1.56E-03
29GO:0009346: citrate lyase complex1.56E-03
30GO:0009654: photosystem II oxygen evolving complex1.62E-03
31GO:0005840: ribosome1.90E-03
32GO:0072686: mitotic spindle2.67E-03
33GO:0000793: condensed chromosome3.30E-03
34GO:0005576: extracellular region3.37E-03
35GO:0005794: Golgi apparatus3.51E-03
36GO:0010005: cortical microtubule, transverse to long axis3.97E-03
37GO:0000794: condensed nuclear chromosome4.68E-03
38GO:0009533: chloroplast stromal thylakoid4.68E-03
39GO:0012507: ER to Golgi transport vesicle membrane5.44E-03
40GO:0005763: mitochondrial small ribosomal subunit7.07E-03
41GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.07E-03
42GO:0000922: spindle pole7.07E-03
43GO:0045298: tubulin complex7.07E-03
44GO:0015030: Cajal body7.94E-03
45GO:0055028: cortical microtubule8.84E-03
46GO:0016324: apical plasma membrane8.84E-03
47GO:0005819: spindle9.38E-03
48GO:0005802: trans-Golgi network1.15E-02
49GO:0009574: preprophase band1.18E-02
50GO:0009506: plasmodesma1.22E-02
51GO:0030659: cytoplasmic vesicle membrane1.28E-02
52GO:0000312: plastid small ribosomal subunit1.28E-02
53GO:0005768: endosome1.43E-02
54GO:0042651: thylakoid membrane1.74E-02
55GO:0031969: chloroplast membrane1.77E-02
56GO:0009532: plastid stroma1.86E-02
57GO:0005871: kinesin complex2.37E-02
58GO:0009504: cell plate2.92E-02
59GO:0005778: peroxisomal membrane3.67E-02
60GO:0030529: intracellular ribonucleoprotein complex3.98E-02
61GO:0005615: extracellular space4.13E-02
Gene type



Gene DE type